BAC Information

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BAC

Clone NameB6Ng01-017I03
Chromosome2 (Build37)
Map Location 32,519,870 - 32,696,622
singlet/doubletdoublet
Overlap geneEng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1
Upstream geneExosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1
Downstream gene9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017I03.bB6Ng01-017I03.g
ACCDH851172DH851173
length918698
definitionDH851172|Mus musculus domesticus DNA, BAC clone: B6Ng01-017I03, 5' end.DH851173|Mus musculus domesticus DNA, BAC clone: B6Ng01-017I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,519,870 - 32,520,783)(32,695,929 - 32,696,622)
sequence
gaattccagtttgattcctagcacccatgttaggtggctgtgagccgggg
acctgactccctattctggcacattcgtgcacacatacacatacacacta
tacacacaccgcatacagacacactatatacaccacacacatacacatac
acacactacacccaccataaacacacacatacacacactacacacaccac
acacacacacacacacacacacacacaccatacacactcacatacacaca
tactgaaaacatttcattcagaaatcagtcatgatggcacatacctgtga
ccccaatatccaaagactgaagatgttgagtttaaggccaaacttgcaca
caatgagattctatctcaaaatggggtggtggcacatccctttagggcta
catagagaaaccctgtctcaaaaacaattattattattttattaagttaa
aatattggggtcaacagcagtgtcacattcctgcttcccagttctatggg
aagttgaagcaggagaatcacttgagtgcagggcaaggtgccatctctta
aaataaaaataaagaattttatctgcattagtagaatctatcagtggacc
cagaggggctgagctaggcatcgtaaaaccagctatgaggccggatccct
gcatcttcacacgtacgtgagcaggtaggttgtctagcttctgctccaga
tcaggcccagagaggaagacagaacgtccagactcacagagccacgtttt
aattcaggtctgtctggctctgaactcttttgcctgcgacactctttctg
tgtgcaccatcacagtctgctgaggccgacttgggcctctctgggctggc
cctgggagggtggggcctgcaagcaaaacctcaggctccactccttagaa
taattgctgtgaaacggc
gaattcactctgtagatcaggctggcctcgaactcacagaggcatgaact
actatgcccattttgttttgttttgtttttggtgtttatttctagatata
gttctgttttgaactggttgtcaccttataataatgtgatttacaattta
agttggggcaagtttccctaagtagtggtttagggaccaagtagcatccc
cgtgtcttcatcagttgtgagaggacttgcatcttccctgtatccaacaa
gggcttattgtgttggctgtacattgaatgttttttttttttaattaatt
aatttattttttggcacacagcacctctgaggcaaacaggtgcttggcaa
ctgaagagctcaacagcagcaagaggctatgggaagctgacttccttggt
ccaacagaagaaactggatctaggctagaaagatagctcagcaattaaga
gcacgcagtgcgctgagccccagttcaatctccagcatccacatcagagc
tttctttagtgaattgatcaggccaacttttatagttacctctggcagtc
cagcagtcctaaatcgtgcgctctggtcccaagcttgccctaggataact
gtctcaggaatgccagcttttcaggttgatcagagggacacagcagctct
ttcctaagggtgctttggctagggattaagcactgtgaaagtgctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_32519870_32520783
seq2: B6Ng01-017I03.b_46_963

seq1  GAATTCCAGTTTGATTCCTAGCACCCATGTTAGGTGGCTGTGAGCCGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTGATTCCTAGCACCCATGTTAGGTGGCTGTGAGCCGGGG  50

seq1  ACCTGACTCCCTATTCTGGCACATTCGTGCACACATACACATACACACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTCCCTATTCTGGCACATTCGTGCACACATACACATACACACTA  100

seq1  TACACACACCGCATACAGACACACTATATACACCACACACATACACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACCGCATACAGACACACTATATACACCACACACATACACATAC  150

seq1  ACACACTACACCCACCATAAACACACACATACACACACTACACACACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTACACCCACCATAAACACACACATACACACACTACACACACCAC  200

seq1  ACACACACACACACACACACACACACACCATACACACTCACATACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACCATACACACTCACATACACACA  250

seq1  TACTGAAAACATTTCATTCAGAAATCAGTCATGATGGCACATACCTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAACATTTCATTCAGAAATCAGTCATGATGGCACATACCTGTGA  300

seq1  CCCCAATATCCAAAGACTGAAGATGTTGAGTTTAAGGCCAAACTTGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATATCCAAAGACTGAAGATGTTGAGTTTAAGGCCAAACTTGCACA  350

seq1  CAATGAGATTCTATCTCAAAATGGGGTGGTGGCACATCCCTTTAGGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGATTCTATCTCAAAATGGGGTGGTGGCACATCCCTTTAGGGCTA  400

seq1  CATAGAGAAACCCTGTCTCAAAAACAATTATTATTATTTTATTAAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAAACCCTGTCTCAAAAACAATTATTATTATTTTATTAAGTTAA  450

seq1  AATATTGGGGTCAACAGCAGTGTCACATTCCTGCTTCCCAGTTCTATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGGGTCAACAGCAGTGTCACATTCCTGCTTCCCAGTTCTATGGG  500

seq1  AAGTTGAAGCAGGAGAATCACTTGAGTGCAGGGCAAGGTGCCATCTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAAGCAGGAGAATCACTTGAGTGCAGGGCAAGGTGCCATCTCTTA  550

seq1  AAATAAAAATAAAGAATTTTATCTGCATTAGTAGAATCTATCAGTGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAAAGAATTTTATCTGCATTAGTAGAATCTATCAGTGGACC  600

seq1  CAGAGGGGCTGAGCTAGGCATCGTAAAACCAGCTATGAGGCCGGATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGCTGAGCTAGGCATCGTAAAACCAGCTATGAGGCCGGATCCCT  650

seq1  GCATCTTCACACGTACGTGAGCAGGTAGGTTGTCTAGCTCCTGCTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCATCTTCACACGTACGTGAGCAGGTAGGTTGTCTAGCTTCTGCTCCAGA  700

seq1  TCAGGCCCAGAGAGGAAGACAGAACGTCCAGACTCACAGAGCCACG-TTT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAGGCCCAGAGAGGAAGACAGAACGTCCAGACTCACAGAGCCACGTTTT  750

seq1  AATTCAGGTCTGTCTGGCTCTGAACTC-TTTGCCTGCGACACTCTTCCTG  798
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  AATTCAGGTCTGTCTGGCTCTGAACTCTTTTGCCTGCGACACTCTTTCTG  800

seq1  TGTGCACCATCACAGTCTGCTGAGGCCGACTTGGGCCTCCTCTGGGCTGG  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTGCACCATCACAGTCTGCTGAGGCCGACTTGGGCCT-CTCTGGGCTGG  849

seq1  CCCTGGGAGGGTGGGGGCTGCAGGC-AGACCCAAGGCTCCACTCC-TAGA  896
      |||||||||||||||| ||||| || | |||  |||||||||||| ||||
seq2  CCCTGGGAGGGTGGGGCCTGCAAGCAAAACCTCAGGCTCCACTCCTTAGA  899

seq1  AGAATTGCTG-GAAACGGC  914
      | |||||||| ||||||||
seq2  ATAATTGCTGTGAAACGGC  918

seq1: chr2_32695929_32696622
seq2: B6Ng01-017I03.g_66_763 (reverse)

seq1  AGTAGCAC-TTCACAGTGCTTAATCCCTAGCC-AAGCACCCTTAGG-AAG  47
      |||||||| ||||||||||||||||||||||| ||||||||||||| |||
seq2  AGTAGCACTTTCACAGTGCTTAATCCCTAGCCAAAGCACCCTTAGGAAAG  50

seq1  AGCTGCTGTGTCCCTCTGATCAACCTG-AAAGCTGGCATTCCTGAGACAG  96
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCTGCTGTGTCCCTCTGATCAACCTGAAAAGCTGGCATTCCTGAGACAG  100

seq1  TTATCCTAGGGCAAGCTTGGGACCAGAGCGCACGATTTAGGACTGCTGGA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAGGGCAAGCTTGGGACCAGAGCGCACGATTTAGGACTGCTGGA  150

seq1  CTGCCAGAGGTAACTATAAAAGTTGGCCTGATCAATTCACTAAAGAAAGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAGGTAACTATAAAAGTTGGCCTGATCAATTCACTAAAGAAAGC  200

seq1  TCTGATGTGGATGCTGGAGATTGAACTGGGGCTCAGCGCACTGCGTGCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTGGATGCTGGAGATTGAACTGGGGCTCAGCGCACTGCGTGCTC  250

seq1  TTAATTGCTGAGCTATCTTTCTAGCCTAGATCCAGTTTCTTCTGTTGGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCTGAGCTATCTTTCTAGCCTAGATCCAGTTTCTTCTGTTGGAC  300

seq1  CAAGGAAGTCAGCTTCCCATAGCCTCTTGCTGCTGTTGAGCTCTTCAGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGTCAGCTTCCCATAGCCTCTTGCTGCTGTTGAGCTCTTCAGTT  350

seq1  GCCAAGCACCTGTTTGCCTCAGAGGTGCTGTGTGCCAAAAAATAAATTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCACCTGTTTGCCTCAGAGGTGCTGTGTGCCAAAAAATAAATTAA  400

seq1  TTAATTAAAAAAAAAAAACATTCAATGTACAGCCAACACAATAAGCCCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAAAAAAAAAAACATTCAATGTACAGCCAACACAATAAGCCCTT  450

seq1  GTTGGATACAGGGAAGATGCAAGTCCTCTCACAACTGATGAAGACACGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATACAGGGAAGATGCAAGTCCTCTCACAACTGATGAAGACACGGG  500

seq1  GATGCTACTTGGTCCCTAAACCACTACTTAGGGAAACTTGCCCCAACTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTACTTGGTCCCTAAACCACTACTTAGGGAAACTTGCCCCAACTTA  550

seq1  AATTGTAAATCACATTATTATAAGGTGACAACCAGTTCAAAACAGAACTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAATCACATTATTATAAGGTGACAACCAGTTCAAAACAGAACTA  600

seq1  TATCTAGAAATAAACACCAAAAACAAAACAAAACAAAATGGGCATAGTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAAATAAACACCAAAAACAAAACAAAACAAAATGGGCATAGTAG  650

seq1  TTCATGCCTCTGTGAGTTCGAGGCCAGCCTGATCTACAGAGTGAATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCTCTGTGAGTTCGAGGCCAGCCTGATCTACAGAGTGAATTC  698