BAC Information

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BAC

Clone NameB6Ng01-017K15
Chromosome2 (Build37)
Map Location 49,768,588 - 49,866,009
singlet/doubletdoublet
Overlap gene2310010M24Rik
Upstream geneOrc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c
Downstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017K15.bB6Ng01-017K15.g
ACCDH851280DH851281
length1,034983
definitionDH851280|Mus musculus domesticus DNA, BAC clone: B6Ng01-017K15, 5' end.DH851281|Mus musculus domesticus DNA, BAC clone: B6Ng01-017K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,768,588 - 49,769,619)(49,865,027 - 49,866,009)
sequence
gaattctggttacctcattcctgtctgttgttgcttcttcttgttgttgt
tttttttaacatgatttttttcttttgggttctataagcccagccctttt
tgttttgttttgcttttatgtgtaaacatggttgctgaagctggaggaga
tggaaaagagagttataaaacattccatgtttggagtaccacaacaggga
cggcagaaaaaggcctcgagtaagaaaaaagcattgtcagtttgattctc
tgctctttagagttatgagacgtttatttccataaattttgggtgattgg
tgctaaagtcaagttggttgaagaagagaatgacccacaactgggaatct
ctgtgtggtttcttttctgggatgtataatgggagccaatgatttgtagg
ctcttgcagcactgtggctgcccctttctgttctgaactgctctgtcttc
aaagcgccctgcctcacaactcccaagctcactgttcctgccttcttggc
tcacctctgcctcattttacatacgcctccttctgtcaagattccaacag
caggctttacagtcaaaccagcggtcagaagccagagcagatcttgacca
caggtatggatttgtgagggagaccttgtcttgttaggctctgtactggc
tagttttgtgtcaacttgacacagctggagttatcacagagaaaggatct
tcagttgaggaaatgcctccatgagatccaactgtaaggcatttttctca
atttagtgatcaagggggaaaggccccttgtgggttggaaccatctctgg
gctggtagtcttgggttctataagagagcaggctgagcaagccaggtgag
gcaagccagtacagaacatccctccatggcctctgcatcagctcctgctt
tctgaccctgcttgagttccagtactgaattcctttggtggatgaacagc
atctggaaagtgtaagccgaataaccctttctccccacttgcctcttgat
catgatgtttgtgcagtataagagactctgacta
gaattcacttaagaaccactgaactagcacattaaataggtctcattatc
ccaggaattttcaaagctgtactatatttacaatacttttttcttctcaa
taaacgtcctggaaggctgtgatgactgaagtcctaggccaagcactggg
gctccatcgtaagcagacacctcactcacagtatgtataaataaatggag
gacagaccacaggcagaaaacaaaagcccaaaacaaagggctgcagtgtg
gctctcagaggggagtaaactgtgcagagtgtctcaatataagcaactta
gtttgagagggcttcaactctgggcaacttttagggtgtaagagatggga
aaaaaataataacaagaacaacaaaaaacaaaaacaaggggctggtgaga
tggctcagtgggtaagagcacctgactgctcttccgaaggtccagagttc
aaatcccagcaaccacatggtggctcacaaccatccataacaagacctga
ctccctcttctggtgtgtctgaagacagctacagtgtacttacatataat
caataaataaatctttaaaaaaacaaaaaaaaacaaaaaaaaaaacaaaa
aaacaaaaacaaaaacaaaagataaaccaaccaaccaatcaatcagacaa
acaaaaacccttagctgtcctctgatggttagtgtgtatttttgaaatga
gatttacataacttaatgataactcatgattcctagttgtaggtgatagc
tttttactctgccagcctcagacagttggtcagaataactaatattctcg
gaaaaatgggtgatgggacgtaaacgtgttgaaagaagaagctgtatttg
ttgtcagagctgtatgcacgaccgtaatatttcatcttcctaacagtaac
ttcatgaccttggtaaatgtgaggatctctatttgataatcaggaattga
gttcttggctattaaaaccttgctcagggtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49768588_49769619
seq2: B6Ng01-017K15.b_45_1078

seq1  GAATTCTGGTTACCTCATTCCTGTCTGTTGTTGCTTCTTCTTGTTGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTACCTCATTCCTGTCTGTTGTTGCTTCTTCTTGTTGTTGT  50

seq1  TTTTTTTAACATGATTTTTTTCTTTTGGGTTCTATAAGCCCAGCCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACATGATTTTTTTCTTTTGGGTTCTATAAGCCCAGCCCTTTT  100

seq1  TGTTTTGTTTTGCTTTTATGTGTAAACATGGTTGCTGAAGCTGGAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGCTTTTATGTGTAAACATGGTTGCTGAAGCTGGAGGAGA  150

seq1  TGGAAAAGAGAGTTATAAAACATTCCATGTTTGGAGTACCACAACAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGAGAGTTATAAAACATTCCATGTTTGGAGTACCACAACAGGGA  200

seq1  CGGCAGAAAAAGGCCTCGAGTAAGAAAAAAGCATTGTCAGTTTGATTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGAAAAAGGCCTCGAGTAAGAAAAAAGCATTGTCAGTTTGATTCTC  250

seq1  TGCTCTTTAGAGTTATGAGACGTTTATTTCCATAAATTTTGGGTGATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTAGAGTTATGAGACGTTTATTTCCATAAATTTTGGGTGATTGG  300

seq1  TGCTAAAGTCAAGTTGGTTGAAGAAGAGAATGACCCACAACTGGGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGTCAAGTTGGTTGAAGAAGAGAATGACCCACAACTGGGAATCT  350

seq1  CTGTGTGGTTTCTTTTCTGGGATGTATAATGGGAGCCAATGATTTGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGTTTCTTTTCTGGGATGTATAATGGGAGCCAATGATTTGTAGG  400

seq1  CTCTTGCAGCACTGTGGCTGCCCCTTTCTGTTCTGAACTGCTCTGTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAGCACTGTGGCTGCCCCTTTCTGTTCTGAACTGCTCTGTCTTC  450

seq1  AAAGCGCCCTGCCTCACAACTCCCAAGCTCACTGTTCCTGCCTTCTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGCCCTGCCTCACAACTCCCAAGCTCACTGTTCCTGCCTTCTTGGC  500

seq1  TCACCTCTGCCTCATTTTACATACGCCTCCTTCTGTCAAGATTCCAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTGCCTCATTTTACATACGCCTCCTTCTGTCAAGATTCCAACAG  550

seq1  CAGGCTTTACAGTCAAACCAGCGGTCAGAAGCCAGAGCAGATCTTGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTACAGTCAAACCAGCGGTCAGAAGCCAGAGCAGATCTTGACCA  600

seq1  CAGGTATGGATTTGTGAGGGAGACCTTGTCTTGTTAGGCTCTGTACTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGGATTTGTGAGGGAGACCTTGTCTTGTTAGGCTCTGTACTGGC  650

seq1  TAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGATCT  700

seq1  TCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCA-TTTTCTCA  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTTCTCA  750

seq1  A-TTAGTGATCAAGGGGGAAAGGCCCCTTGTGGG-TGGAACCATCTCTGG  797
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTTGGAACCATCTCTGG  800

seq1  GCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGTGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGTGAG  850

seq1  GCAAGCCAGTACAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGTACAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTT  900

seq1  TCTGA-CCTGCTTGAGTTCCAGTACTGATTTCCTTTGGT-GATGAACAGC  945
      ||||| |||||||||||||||||||||| |||||||||| ||||||||||
seq2  TCTGACCCTGCTTGAGTTCCAGTACTGAATTCCTTTGGTGGATGAACAGC  950

seq1  ATCATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCCCAACTTGCTTCTT  995
      |||  | ||||||||||||||| |||||||| |||||| |||||| ||||
seq2  ATCTGGAAAGTGTAAGCCGAAT-AACCCTTT-CTCCCC-ACTTGCCTCTT  997

seq1  GGTCATGATGTTTGTGCAGTAATAGAGACCCTGACTA  1032
      | |||||||||||||||||||  |||||| |||||||
seq2  GATCATGATGTTTGTGCAGTATAAGAGACTCTGACTA  1034

seq1: chr2_49865027_49866009
seq2: B6Ng01-017K15.g_70_1052 (reverse)

seq1  GAGACCCTGAGCAAGTGTTTTAATAGCCATGAACTTCAATTTCCTGATTT  50
      ||||||||||||||| ||||||||||||| |||| |||| ||||||| ||
seq2  GAGACCCTGAGCAAG-GTTTTAATAGCCAAGAAC-TCAA-TTCCTGA-TT  46

seq1  ATCAAATAGAGATCCTCACATTTTACCAAGGTCATGAGGTTACTGTTAGG  100
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  ATCAAATAGAGATCCTCACA-TTTACCAAGGTCATGAAGTTACTGTTAGG  95

seq1  AAGATGAAATATTTACGGTCGTGCATACAGCTCTGACAACAAATACAGCT  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAATA-TTACGGTCGTGCATACAGCTCTGACAACAAATACAGCT  144

seq1  TCTTCTTTC-ACACG-TTACGTCCCATCACCCA-TTTTCCGAGAATATTA  197
      ||||||||| ||||| ||||||||||||||||| ||||||||||||||||
seq2  TCTTCTTTCAACACGTTTACGTCCCATCACCCATTTTTCCGAGAATATTA  194

seq1  GTTATTCTGACCAACTGTCTGAGGCTGGCAGAGT-AAAAGCTATCACCTA  246
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTATTCTGACCAACTGTCTGAGGCTGGCAGAGTAAAAAGCTATCACCTA  244

seq1  CAACTAGGAATCATGAGTTATCATT-AGTTATGTAAATCTCATTTC-AAA  294
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  CAACTAGGAATCATGAGTTATCATTAAGTTATGTAAATCTCATTTCAAAA  294

seq1  ATACACACTAACCATCAGAGGACAGCTAAGGGTTTTTGTTTGTCTGATTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACTAACCATCAGAGGACAGCTAAGGGTTTTTGTTTGTCTGATTG  344

seq1  ATTGGTTGGTTGGTTTATCTTTTGTTTTTGTTTTTGTTTTTTTGTTTTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGGTTGGTTTATCTTTTGTTTTTGTTTTTGTTTTTTTGTTTTTT  394

seq1  TTTTTGTTTTTTTTTGTTTTTTTAAAGATTTATTTATTGATTATATGTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTTTTGTTTTTTTAAAGATTTATTTATTGATTATATGTAA  444

seq1  GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGGTCTTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGGTCTTGT  494

seq1  TATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGAC  544

seq1  CTTCGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTCACCAGCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTCACCAGCC  594

seq1  CCTTGTTTTTGTTTTTTGTTGTTCTTGTTATTATTTTTTTCCCATCTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTTTGTTTTTTGTTGTTCTTGTTATTATTTTTTTCCCATCTCTT  644

seq1  ACACCCTAAAAGTTGCCCAGAGTTGAAGCCCTCTCAAACTAAGTTGCTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTAAAAGTTGCCCAGAGTTGAAGCCCTCTCAAACTAAGTTGCTTA  694

seq1  TATTGAGACACTCTGCACAGTTTACTCCCCTCTGAGAGCCACACTGCAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGACACTCTGCACAGTTTACTCCCCTCTGAGAGCCACACTGCAGC  744

seq1  CCTTTGTTTTGGGCTTTTGTTTTCTGCCTGTGGTCTGTCCTCCATTTATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTTTGGGCTTTTGTTTTCTGCCTGTGGTCTGTCCTCCATTTATT  794

seq1  TATACATACTGTGAGTGAGGTGTCTGCTTACGATGGAGCCCCAGTGCTTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATACTGTGAGTGAGGTGTCTGCTTACGATGGAGCCCCAGTGCTTG  844

seq1  GCCTAGGACTTCAGTCATCACAGCCTTCCAGGACGTTTATTGAGAAGAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGACTTCAGTCATCACAGCCTTCCAGGACGTTTATTGAGAAGAAA  894

seq1  AAAGTATTGTAAATATAGTACAGCTTTGAAAATTCCTGGGATAATGAGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTGTAAATATAGTACAGCTTTGAAAATTCCTGGGATAATGAGAC  944

seq1  CTATTTAATGTGCTAGTTCAGTGGTTCTTAAGTGAATTC  983
      |||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAATGTGCTAGTTCAGTGGTTCTTAAGTGAATTC  983