BAC Information

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BAC

Clone NameB6Ng01-018E16
Chromosome2 (Build37)
Map Location 9,968,245 - 10,110,809
singlet/doubletdoublet
Overlap geneTaf3, Atp5c1, Kin, Itih2, Itih5
Upstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik
Downstream geneSfmbt2, LOC100040690, LOC100040703, LOC667192, Prkcq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018E16.bB6Ng01-018E16.g
ACCDH851734DH851735
length1,1041,101
definitionDH851734|Mus musculus domesticus DNA, BAC clone: B6Ng01-018E16, 5' end.DH851735|Mus musculus domesticus DNA, BAC clone: B6Ng01-018E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,968,245 - 9,969,356)(10,109,703 - 10,110,809)
sequence
gaattcattcactaagtcttttgtggactacccattaatttactagccaa
ctgtttcctatttggaacaaccctagggtgacacaaatcaggatgctcca
atcagttagcacagtaggtactagagtaatacaaatacaatcaagggtgc
tccaatcagcacattaggtacttacgcagaatatgaatataatcaattta
tcttctgggtcagggtacacatatacacaaacaattacaaaataagataa
ataggatctgatttgttggggtttcattattttgttaggaatggcatttg
gagtcttgaaggtatggcgaatctataggccctcactttaaaagtaggaa
ccactgtagcagaacaaattactctataaaacacttcatttagttatcca
acttgccaccttaaacgtcatatcttggaatttaaatgaacgttataatc
cccgcccccccccacacacacacacactcatacatcagtaaaaatcacac
atctataaaatgatctgtaccttctacaaatcattaaataccaccgggta
aagacactactgggcattcacttaaaagtcaatacactgtccccagattc
tatgtctcaagttcctcccgtggggctggcttctagttgtggggacatcc
cataagtagtttcaagagggaaactgggtattacttggccaccaggattc
agccctagtttcaactgcagtcctccatgtgggaccgtccccactctcct
agaacacacctgaaagggctggagccctgaagaggggcaacacggaggac
tgtgctatctttactcactcccaaaacatacccaggagcctttaatctca
ttaaagagacatgaacagaaaaaaagaaagttaatacatactgcgacact
gagtacccggaaaacctcccaaataccgagtgatgctcccatcacactta
gatcaacactacggaagagcatagaggaaggaggcgtgtgtactgaagat
gcttattgaaagtatttcagcgatatcgactaaactgcccttgaaaagta
tcagcgaatctgtgaaagcacagatataaagggggaaaaaaataaaaaaa
aggc
gaattcttttgctcagagcattctgggagaagctgcaggaaagaagagac
tcaaattgtctggaggaatctcagatggctcagcaggtaagagcactgac
tgctcttccagaggttatgagttcaaatcctagcaaccacatggtggctc
acaaccatccgtaatgagatccaatgccctcttctggagtgtctgaagac
agctacagtgcacttacatataatagtaaataaatcttaaaaacaaacaa
acaaacaaacaaaaactacaagttctgaactggggaggataagtcagaaa
aggaatgacaaaagggatcagacgtgggggaccagacaagggaggccatt
ccagtccacacacgaatggttcactgagctctttggctcactgtactcct
tcctaaaactggaaagagatacaaatattgagccagaaaagcttcactcc
acattaggcagatcaaatgaaaaagaagtgacagcaaaacccattgaagt
aaaaacttcagaacgtctgatggaagaaacatggggcaggaatgggatta
gatcactttcattagtaaaaccagatttggttacgaaagacattggaaga
ataactcaaaattcaaaggggaagttttggggttttttttaaatcttaaa
ttccatacacagccaaaataccaatccagacctcagaaagcttatccacc
attcactcatgctaagaatgttacttcagaatatactttcaacaaaggta
aagaccattaaagaggaggaagttgtagaatcaaagaaataacaaaacta
atccagaacaaaagggagactcccagagaacatgttttacagcaaaatga
caaagcaaaagtaggacattgggaaggacaggacccagccacgttttaag
aactaggaaattaaggatttagcctgatcttccatttatcctgtagctga
cgttggccaagcatccagtgtgatggatgtcatttcaaagaagctcaatt
atagctctcattttatcattacaaacaaactatggttctagtagatgtta
ccagtgcaaataatttctatcttctagaaaacaggaaagcatttaaactc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9968245_9969356
seq2: B6Ng01-018E16.b_41_1144

seq1  GAATTCATTCACTAAGTCTTTTGTGGACTACCCATTAATTTACTAGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACTAAGTCTTTTGTGGACTACCCATTAATTTACTAGCCAA  50

seq1  CTGTTTCCTATTTGGAACAACCCTAGGGTGACACAAATCAGGATGCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTATTTGGAACAACCCTAGGGTGACACAAATCAGGATGCTCCA  100

seq1  ATCAGTTAGCACAGTAGGTACTAGAGTAATACAAATACAATCAAGGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTAGCACAGTAGGTACTAGAGTAATACAAATACAATCAAGGGTGC  150

seq1  TCCAATCAGCACATTAGGTACTTACGCAGAATATGAATATAATCAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCAGCACATTAGGTACTTACGCAGAATATGAATATAATCAATTTA  200

seq1  TCTTCTGGGTCAGGGTACACATATACACAAACAATTACAAAATAAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGGTCAGGGTACACATATACACAAACAATTACAAAATAAGATAA  250

seq1  ATAGGATCTGATTTGTTGGGGTTTCATTATTTTGTTAGGAATGGCATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCTGATTTGTTGGGGTTTCATTATTTTGTTAGGAATGGCATTTG  300

seq1  GAGTCTTGAAGGTATGGCGAATCTATAGGCCCTCACTTTAAAAGTAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGAAGGTATGGCGAATCTATAGGCCCTCACTTTAAAAGTAGGAA  350

seq1  CCACTGTAGCAGAACAAATTACTCTATAAAACACTTCATTTAGTTATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTAGCAGAACAAATTACTCTATAAAACACTTCATTTAGTTATCCA  400

seq1  ACTTGCCACCTTAAACGTCATATCTTGGAATTTAAATGAACGTTATAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCACCTTAAACGTCATATCTTGGAATTTAAATGAACGTTATAATC  450

seq1  CCCGCCCCCCCCCACACACACACACACTCATACATCAGTAAAAATCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCCCCCCCACACACACACACACTCATACATCAGTAAAAATCACAC  500

seq1  ATCTATAAAATGATCTGTACCTTCTACAAATCATTAAATACCACCGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAAAATGATCTGTACCTTCTACAAATCATTAAATACCACCGGGTA  550

seq1  AAGACACTACTGGGCATTCACTTAAAAGTCAATACACTGTCCCCAGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACTACTGGGCATTCACTTAAAAGTCAATACACTGTCCCCAGATTC  600

seq1  TATGTCTCAAGTTCCTCCCGTGGGGCTGGCTTCTAGTTGTGGGGACATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCAAGTTCCTCCCGTGGGGCTGGCTTCTAGTTGTGGGGACATCC  650

seq1  CATAAGTAGTTTCAAGAGGGAAACTGGGTATTACTTGGCCACCAGGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTAGTTTCAAGAGGGAAACTGGGTATTACTTGGCCACCAGGATTC  700

seq1  AGCCCTAGTTTCAACTGCAGTCCTCCATGTGGGACCGTCCCCACTCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAGTTTCAACTGCAGTCCTCCATGTGGGACCGTCCCCACTCTCCT  750

seq1  AGAACACACCTGAAAGGGCTGGAGCCCTGAAGAGGGGCAACACGGAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACACCTGAAAGGGCTGGAGCCCTGAAGAGGGGCAACACGGAGGAC  800

seq1  TGTGCTATCTTTACTCACTCCCAAAACATACACAGGAGCCTTTAATCTCA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTGCTATCTTTACTCACTCCCAAAACATACCCAGGAGCCTTTAATCTCA  850

seq1  TTAAAGAGACATGAACCAGAAAAAAA-AAAGTTAATACATACTGCGACAC  899
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TTAAAGAGACATGAA-CAGAAAAAAAGAAAGTTAATACATACTGCGACAC  899

seq1  TGAGTACCCGGAAAACCTCCCAAATTACCGAGTGATGCTTCCCATCACAC  949
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  TGAGTACCCGGAAAACCTCCCAAA-TACCGAGTGATGC-TCCCATCACAC  947

seq1  TTAGATCAACACTAACAGAAGAGCATAGAGGAAGGACGCCGTGCGTAACT  999
      ||||||||||||| || ||||||||||||||||||| | |||| || |||
seq2  TTAGATCAACACT-ACGGAAGAGCATAGAGGAAGGA-GGCGTGTGT-ACT  994

seq1  G-AGATGCTTATTGAAAGGTATTCAGCGAAATCGACAAAACCTGCCTTGA  1048
      | ||||||||||||||||   |||||||| |||||| ||||   ||||||
seq2  GAAGATGCTTATTGAAAGTATTTCAGCGATATCGACTAAACTGCCCTTGA  1044

seq1  AAAGTAGTAGGCGAAGTCTGTGAAACGAACAGATAGAGAGGGGAGAAAAA  1098
      |||||| |  ||||| ||||||||| | ||||||| | ||||| ||||||
seq2  AAAGTA-TCAGCGAA-TCTGTGAAA-GCACAGATATAAAGGGG-GAAAAA  1090

seq1  AAAAAAAAAAAGGC  1112
      || |||||||||||
seq2  AATAAAAAAAAGGC  1104

seq1: chr2_10109703_10110809
seq2: B6Ng01-018E16.g_67_1167 (reverse)

seq1  AGAGTTTTAATTGCTTTCCTTGTTTCTTAGGAGATAGAAATTCATTTTGC  50
      |||| ||||| |||||||| |||||  ||| ||||||||||| ||||   
seq2  AGAG-TTTAAATGCTTTCC-TGTTTTCTAGAAGATAGAAATT-ATTT--G  45

seq1  CACTGGTAACATCTACTAAGACACATAGTTTGTTTGTAATGATAAAATGA  100
      ||||||||||||||||| |||  |||||||||||||||||||||||||||
seq2  CACTGGTAACATCTACT-AGAACCATAGTTTGTTTGTAATGATAAAATGA  94

seq1  GGAGCTATAATTGAGCTTCTTGTGAAATGACATCCAATCACACTGGATGC  150
       |||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  -GAGCTATAATTGAGCTTCTT-TGAAATGACATCC-ATCACACTGGATGC  141

seq1  TTGGCCAACGTCAGCTACAGGATAAATGGAAGATCAGGCTAAATCC-TGA  199
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  TTGGCCAACGTCAGCTACAGGATAAATGGAAGATCAGGCTAAATCCTTAA  191

seq1  TTTCCTAGTTCTTAAAACGTGGCTGGGTCCTGTCCTT-CCAATGTCCTAC  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCCTAGTTCTTAAAACGTGGCTGGGTCCTGTCCTTCCCAATGTCCTAC  241

seq1  TTTTGCTTTGTCATTTTGCTGTAAAACATGTTCTCT-GGAGTCTCCCTTT  297
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTGCTTTGTCATTTTGCTGTAAAACATGTTCTCTGGGAGTCTCCCTTT  291

seq1  TGTTCTGGATTAGTTTTGTTATTTCTTTGATTCTACAACTTCCTCCTCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGATTAGTTTTGTTATTTCTTTGATTCTACAACTTCCTCCTCTT  341

seq1  TAATGGTCTTTACCTTTGTTGAAAGTATATTCTGAAGTAACATTCTTAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTCTTTACCTTTGTTGAAAGTATATTCTGAAGTAACATTCTTAGC  391

seq1  ATGAGTGAATGGTGGATAAGCTTTCTGAGGTCTGGATTGGTATTTTGGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGAATGGTGGATAAGCTTTCTGAGGTCTGGATTGGTATTTTGGCT  441

seq1  GTGTATGGAATTTAAGATTTAAAAAAAACCCCAAAACTTCCCCTTTGAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGGAATTTAAGATTTAAAAAAAACCCCAAAACTTCCCCTTTGAAT  491

seq1  TTTGAGTTATTCTTCCAATGTCTTTCGTAACCAAATCTGGTTTTACTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTATTCTTCCAATGTCTTTCGTAACCAAATCTGGTTTTACTAAT  541

seq1  GAAAGTGATCTAATCCCATTCCTGCCCCATGTTTCTTCCATCAGACGTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGATCTAATCCCATTCCTGCCCCATGTTTCTTCCATCAGACGTTC  591

seq1  TGAAGTTTTTACTTCAATGGGTTTTGCTGTCACTTCTTTTTCATTTGATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTTTACTTCAATGGGTTTTGCTGTCACTTCTTTTTCATTTGATC  641

seq1  TGCCTAATGTGGAGTGAAGCTTTTCTGGCTCAATATTTGTATCTCTTTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATGTGGAGTGAAGCTTTTCTGGCTCAATATTTGTATCTCTTTCC  691

seq1  AGTTTTAGGAAGGAGTACAGTGAGCCAAAGAGCTCAGTGAACCATTCGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGGAAGGAGTACAGTGAGCCAAAGAGCTCAGTGAACCATTCGTG  741

seq1  TGTGGACTGGAATGGCCTCCCTTGTCTGGTCCCCCACGTCTGATCCCTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTGGAATGGCCTCCCTTGTCTGGTCCCCCACGTCTGATCCCTTT  791

seq1  TGTCATTCCTTTTCTGACTTATCCTCCCCAGTTCAGAACTTGTAGTTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCCTTTTCTGACTTATCCTCCCCAGTTCAGAACTTGTAGTTTTT  841

seq1  GTTTGTTTGTTTGTTTGTTTTTAAGATTTATTTACTATTATATGTAAGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTTTTTAAGATTTATTTACTATTATATGTAAGTG  891

seq1  CACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATTGGATCTCATTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATTGGATCTCATTAC  941

seq1  GGATGGTTGTGAGCCACCATGTGGTTGCTAGGATTTGAACTCATAACCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTGTGAGCCACCATGTGGTTGCTAGGATTTGAACTCATAACCTC  991

seq1  TGGAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTGAGATTCCTCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTGAGATTCCTCCA  1041

seq1  GACAATTTGAGTCTCTTCTTTCCTGCAGCTTCTCCCAGAATGCTCTGAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTGAGTCTCTTCTTTCCTGCAGCTTCTCCCAGAATGCTCTGAGC  1091

seq1  AAAAGAATTC  1107
      ||||||||||
seq2  AAAAGAATTC  1101