BAC Information

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BAC

Clone NameB6Ng01-018G17
Chromosome2 (Build37)
Map Location 30,598,683 - 30,746,513
singlet/doubletdoublet
Overlap geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges
Upstream geneLOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad
Downstream genePpia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018G17.bB6Ng01-018G17.g
ACCDH851826DH851827
length889487
definitionDH851826|Mus musculus domesticus DNA, BAC clone: B6Ng01-018G17, 5' end.DH851827|Mus musculus domesticus DNA, BAC clone: B6Ng01-018G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,745,625 - 30,746,513)(30,598,683 - 30,599,175)
sequence
gaattcagacaaaagccttttttcctgcgttttaattttctgtggatggg
tgttttgtatgaatgtctgtctgtatcataggtgtacctggtgcccatgg
agaccagaagaagttgctggagctggagttagagacattgtgagccatca
tgtggatactgggaattgaacccgggttctctgaagagcaaccagtgctc
ttaaccactgagccatttctccagacccatttttagataagggattcaag
gatccaagaagacttgtcctgaattcctgagctagcatagtcaaaaactt
tgcaagatgggacccaggagagagaggactggagagtccatgcagggcgt
ataaatactcatctacttcagtcttttcctctcaggaaggtgagattgtg
agggccaggtgtaagaacctgccagttgcctgatgcagaccatgcattgc
ccacaaggtctgcctgctgtggggcctgcgagatggaggccagggcccct
cggagggtctactcatttgtctttcttgcccatcccctggcactgcagtg
ggaaaggcaccaagcaagggacagtgacagcctcatgtggggtaagaagg
ctcagtcctctgatccctgctgggcagggaggtgagttacgctaatgctg
gccaggatgtataaagaaattcaagtgtgcacaccttcaatccagcacac
aggcaggtggatagctgagttggaagccagcctggtctacccagtgagtc
cttgtctcaaaagcaaagaaatcagtacctgtgtgccatggtatgaagtt
gaaattggaggggtgggaaatcggggttagaagggcattaaggaggccga
ggtaccctttttttgttccaatcatgagagaggtgggga
agaaaaatccaaccatgcaccagccctcattggagagatttattgggggg
ggctgcccctgaatggcaatgacaagggacaggccatgaaagcaagggcc
ttatgaaggttacagcacaggcacacagggagaatgctgtgggacagtgg
aaatgtgtcacatttggcagctgatgatggtgtggccactggcgctgagt
cactgaaagtggcctgggagagcatgcggttctggaatgtgggtggttct
ccccaacagaaacaacacccacagattgtcctctggcctccacatactcc
ccgtggcctgggcacacataaagaaatgttacacctttaaccctagcact
ggggaggcagaggcaggcaaacctttttgagttttggtcatctggtctac
agagcttacatagcatgtttcaggtcagccaggattgcacagtgagacct
tgtctcaaagagggagaggaagagggggaagggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30745625_30746513
seq2: B6Ng01-018G17.b_43_931 (reverse)

seq1  TCCCCACCTCTCTCCTGCTTGGAACATAGAAAGGGTACCTCGGCCTCCTT  50
      |||||||||||||| || |||||||| | |||||||||||||||||||||
seq2  TCCCCACCTCTCTCATGATTGGAACAAAAAAAGGGTACCTCGGCCTCCTT  50

seq1  AATGGCCCTCTTACCCCGATTTCCCACCCCTCCAATTTCAACTTCATACC  100
      |||| || ||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTTCTAACCCCGATTTCCCACCCCTCCAATTTCAACTTCATACC  100

seq1  ATGGCACACAGGTACTGATTTCTTTGCTTTTGAGACAAGGACTCACTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACACAGGTACTGATTTCTTTGCTTTTGAGACAAGGACTCACTGGG  150

seq1  TAGACCAGGCTGGCTTCCAACTCAGCTATCCACCTGCCTGTGTGCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCTTCCAACTCAGCTATCCACCTGCCTGTGTGCTGGAT  200

seq1  TGAAGGTGTGCACACTTGAATTTCTTTATACATCCTGGCCAGCATTAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGTGCACACTTGAATTTCTTTATACATCCTGGCCAGCATTAGCG  250

seq1  TAACTCACCTCCCTGCCCAGCAGGGATCAGAGGACTGAGCCTTCTTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCACCTCCCTGCCCAGCAGGGATCAGAGGACTGAGCCTTCTTACCC  300

seq1  CACATGAGGCTGTCACTGTCCCTTGCTTGGTGCCTTTCCCACTGCAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGGCTGTCACTGTCCCTTGCTTGGTGCCTTTCCCACTGCAGTGC  350

seq1  CAGGGGATGGGCAAGAAAGACAAATGAGTAGACCCTCCGAGGGGCCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATGGGCAAGAAAGACAAATGAGTAGACCCTCCGAGGGGCCCTGG  400

seq1  CCTCCATCTCGCAGGCCCCACAGCAGGCAGACCTTGTGGGCAATGCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCTCGCAGGCCCCACAGCAGGCAGACCTTGTGGGCAATGCATGG  450

seq1  TCTGCATCAGGCAACTGGCAGGTTCTTACACCTGGCCCTCACAATCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCAGGCAACTGGCAGGTTCTTACACCTGGCCCTCACAATCTCAC  500

seq1  CTTCCTGAGAGGAAAAGACTGAAGTAGATGAGTATTTATACGCCCTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAGAGGAAAAGACTGAAGTAGATGAGTATTTATACGCCCTGCAT  550

seq1  GGACTCTCCAGTCCTCTCTCTCCTGGGTCCCATCTTGCAAAGTTTTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCCAGTCCTCTCTCTCCTGGGTCCCATCTTGCAAAGTTTTTGAC  600

seq1  TATGCTAGCTCAGGAATTCAGGACAAGTCTTCTTGGATCCTTGAATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGCTCAGGAATTCAGGACAAGTCTTCTTGGATCCTTGAATCCCT  650

seq1  TATCTAAAAATGGGTCTGGAGAAATGGCTCAGTGGTTAAGAGCACTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAAATGGGTCTGGAGAAATGGCTCAGTGGTTAAGAGCACTGGTT  700

seq1  GCTCTTCAGAGAACCCGGGTTCAATTCCCAGTATCCACATGATGGCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCAGAGAACCCGGGTTCAATTCCCAGTATCCACATGATGGCTCAC  750

seq1  AATGTCTCTAACTCCAGCTCCAGCAACTTCTTCTGGTCTCCATGGGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCTAACTCCAGCTCCAGCAACTTCTTCTGGTCTCCATGGGCACC  800

seq1  AGGTACACCTATGATACAGACAGACATTCATACAAAACACCCATCCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACACCTATGATACAGACAGACATTCATACAAAACACCCATCCACAG  850

seq1  AAAATTAAAACGCAGGAAAAAAGGCTTTTGTCTGAATTC  889
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAACGCAGGAAAAAAGGCTTTTGTCTGAATTC  889

seq1: chr2_30598683_30599175
seq2: B6Ng01-018G17.g_67_559

seq1  GAATTCAGAAAAATCCAACCATGCACCAGCCCTCATTGGAGAGATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAAATCCAACCATGCACCAGCCCTCATTGGAGAGATTTATT  50

seq1  GGGGGGGGCTGCCCCTGAATGGCAATGACAAGGGACAGGCCATGAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGCTGCCCCTGAATGGCAATGACAAGGGACAGGCCATGAAAGCA  100

seq1  AGGGCCTTATGAAGGTTACAGCACAGGCACACAGGGAGAATGCTGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTTATGAAGGTTACAGCACAGGCACACAGGGAGAATGCTGTGGGA  150

seq1  CAGTGGAAATGTGTCACATTTGGCAGCTGATGATGGTGTGGCCACTGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAATGTGTCACATTTGGCAGCTGATGATGGTGTGGCCACTGGCG  200

seq1  CTGAGTCACTGAAAGTGGCCTGGGAGAGCATGCGGTTCTGGAATGTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCACTGAAAGTGGCCTGGGAGAGCATGCGGTTCTGGAATGTGGGT  250

seq1  GGTTCTCCCCAACAGAAACAACACCCACAGATTGTCCTCTGGCCTCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCCCCAACAGAAACAACACCCACAGATTGTCCTCTGGCCTCCACA  300

seq1  TACTCCCCGTGGCCTGGGCACACATAAAGAAATGTTACACCTTTAACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCCGTGGCCTGGGCACACATAAAGAAATGTTACACCTTTAACCCT  350

seq1  AGCACTGGGGAGGCAGAGGCAGGCAAACCTTTTTGAGTTTTGGTCATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGGAGGCAGAGGCAGGCAAACCTTTTTGAGTTTTGGTCATCTG  400

seq1  GTCTACAGAGCTTACATAGCATGTTTCAGGTCAGCCAGGATTGCACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGCTTACATAGCATGTTTCAGGTCAGCCAGGATTGCACAGTG  450

seq1  AGACCTTGTCTCAAAGAGGGAGAGGAAGAGGGGGAAGGGGGAG  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGTCTCAAAGAGGGAGAGGAAGAGGGGGAAGGGGGAG  493