BAC Information

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BAC

Clone NameB6Ng01-018I11
Chromosome2 (Build37)
Map Location 81,572,186 - 81,674,421
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC103324, LOC668027, LOC100040624, LOC100040655, LOC100040704
Downstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018I11.bB6Ng01-018I11.g
ACCDH851907DH851908
length9811,031
definitionDH851907|Mus musculus domesticus DNA, BAC clone: B6Ng01-018I11, 5' end.DH851908|Mus musculus domesticus DNA, BAC clone: B6Ng01-018I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,572,186 - 81,573,194)(81,673,390 - 81,674,421)
sequence
gaattcatttattgctctgaatgactatgccatccaagggtacaggtgat
gttttatttatcaaatacagtgtctgtctgattgtagaagcaaatttaga
taattatcaccatatgaaccagtaaaaaagtaaataaatttaatgaaatg
aaagaaaatgaagaacagaatttgaaatttaagtgtccacattgattata
taacttaagggttctgccttatacagtatgtcagcttatgaatacagccc
gttcacatctatctatctatctatctatctatctatctatctatctatct
atctatctatctgcctatctatctatctgtctgtctgtctgtctgtctgt
ctgtctgtctgtctgtctgtctgtctatctatctgcctatctgcctatct
gcctatctatctatctatctatctatctatctatctatctatctatctat
ctatctatctgcctatcatctatcttatttgaatcgataaaaatgaatcc
tgttttgtagatgagaacatagtggttatgttaaagttgtgtgagcagca
tttgtgggataaaacaaacatgtgtaacttgtgtttctggaggtgaatgt
gtaatagactttagtcgccaaaaactgaagataggaaaggttgcaaaatg
gaatagaacagatttctactggaatgttacatttaaatgtgttataatgg
catatgtgtaacctgtctatcaacttcatttctaatttacaaacaagaaa
tataggcatcacagtattttgacaagatttaattatgtaagtatgagaag
tacagacatatattaggatcacaatatagctcaacaaaccagagtagtta
gcaacagagctctaggagaaactagaaaagcattgcagtctgatatcaca
atttatggcaaatgtattactgtatatagtattatcttctttctatcagc
gtgcatcttgcactaaaatgctgatgagtat
gaattccacttataataattttgaaaagttgatgaaattaaatacagaag
aacttgtagcacattctccaagataatcagttaattttcttctttttctt
ccatatacttctcctactcaatgataatatctccagggaaacctaaaaca
aaagagagacagaaaggaaaagtagaaaaaaatatgaacaggaaggacag
agagagagagagagagagagagagagagagagagagagagagagagagaa
caaatgagagacaggaatagaggggtttaaatttagagtcaaaagctaaa
tttaatgccctttagaaaaaatatgacaaatggagaaaatgataacatac
atcaggaattagcactcacagttgaagtgtcccattttgacacagtatta
taaataacttcttgggaaaaggtttttaaaaataaaattctcagggcatc
tggcaatttcagatgtttccaatgagtgtttctctgaggttgaaaatggc
taaggacactttgactttttgattcttaaaaattataaatgatcaagatc
caaaggaaatttgctaaggctgagttatatatttagcaattaacgattac
agtcacccaactgaattcattaaaatgcacctgctttatgaataacctta
gctggagtttcatattagaaaatctcaattatgtccttgtgagaattagg
gacctcccggtggctaggaggttggttaacatatttctatagaacagaag
ttcttttgtaatgataggaatgtactttgcttttagtcagggtaagataa
aggggtatataaaaaatgcatatctttattttaagacaatagcttactta
aacctttaaagcattaagaataaaacaccaagaaccactgtgggccattt
tagaaggttatgtgtacagtgtgctcaatccaagtggatgaaatgactct
gctctttacacatgatgtggaaaaactccaagtgctggattcagcgctat
ataactacaagtacctgcctctaggcgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_81572186_81573194
seq2: B6Ng01-018I11.b_48_1028

seq1  GAATTCATTTATTGCTCTGAATGACTATGCCATCCAAGGGTACAGGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATTGCTCTGAATGACTATGCCATCCAAGGGTACAGGTGAT  50

seq1  GTTTTATTTATCAAATACAGTGTCTGTCTGATTGTAGAAGCAAATTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTATCAAATACAGTGTCTGTCTGATTGTAGAAGCAAATTTAGA  100

seq1  TAATTATCACCATATGAACCAGTAAAAAAGTAAATAAATTTAATGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATCACCATATGAACCAGTAAAAAAGTAAATAAATTTAATGAAATG  150

seq1  AAAGAAAATGAAGAACAGAATTTGAAATTTAAGTGTCCACATTGATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATGAAGAACAGAATTTGAAATTTAAGTGTCCACATTGATTATA  200

seq1  TAACTTAAGGGTTCTGCCTTATACAGTATGTCAGCTTATGAATACAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAAGGGTTCTGCCTTATACAGTATGTCAGCTTATGAATACAGCCC  250

seq1  GTTCAC----ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  296
      ||||||    ||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  300

seq1  ATCTATCTATCTGCCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTGCCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGT  350

seq1  CTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTGCCTATCTGCCTATCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTGCCTATCTGCCTATCT  400

seq1  GCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  450

seq1  CTATCTATCTGCCTATCATCTATCTTATTTGAATCGATAAAAATGAATCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTGCCTATCATCTATCTTATTTGAATCGATAAAAATGAATCC  500

seq1  TGTTTTGTAGATGAGAACATAGTGGTTATGTTAAAGTTGTGTGAGCAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTAGATGAGAACATAGTGGTTATGTTAAAGTTGTGTGAGCAGCA  550

seq1  TTTGTGGGATAAAACAAACATGTGTAACTTGTGTTTCTGGAGGTGAATGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGATAAAACAAACATGTGTAACTTGTGTTTCTGGAGGTGAATGT  600

seq1  GTAATAGACTTTAGTCGCCAAAAACTGAAGATAGGAAAGGTTGCAAAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGACTTTAGTCGCCAAAAACTGAAGATAGGAAAGGTTGCAAAATG  650

seq1  GAATAGAACAGATTTCTACTGGAATGTTACATTTAAATGTGTTATAATGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAACAGATTTCTACTGGAATGTTACATTTAAATGTGTTATAATGG  700

seq1  CATATGTGTAACCTGTCTATCAACTTCATTTCTAATTTACAAACAAGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTAACCTGTCTATCAACTTCATTTCTAATTTACAAACAAGAAA  750

seq1  TATAGGCATCACAGTATTTTGACAAGATTTAAATTATGTAAGGTATGAGA  796
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  TATAGGCATCACAGTATTTTGACAAGATTT-AATTATGTAA-GTATGAGA  798

seq1  AGTACAGACATATATTAGGGATTCCACAAATAATAGCTCAAACAAAACCA  846
      ||||||||||||||||| ||||  |||||   |||||||||   ||||||
seq2  AGTACAGACATATATTA-GGAT--CACAA--TATAGCTCAA--CAAACCA  841

seq1  GAGTAGTTTAAGCAAACAGAGCTCTTAGGAGAAAACTAGAAAAAGCATTG  896
      ||||||||  ||| |||||||||| |||||| ||||||| ||||||||||
seq2  GAGTAGTT--AGC-AACAGAGCTC-TAGGAG-AAACTAG-AAAAGCATTG  885

seq1  CAGTCTGATATCACAAATTTAATGGGCAAAATGTATTTACTGTATATATA  946
      ||||||||||||||||  || ||||   ||||||| |||||||||||   
seq2  CAGTCTGATATCACAA--TTTATGG--CAAATGTA-TTACTGTATAT---  927

seq1  AGTATATATTTTTTCTTTTTTTATCAGCGTGCATCTTGCACTATAAAATG  996
      ||||| ||| |    | ||| ||||||||||||||||||||  |||||||
seq2  AGTAT-TATCT----TCTTTCTATCAGCGTGCATCTTGCAC--TAAAATG  970

seq1  CTGTATGATGTAT  1009
      ||| |||| ||||
seq2  CTG-ATGA-GTAT  981

seq1: chr2_81673390_81674421
seq2: B6Ng01-018I11.g_67_1097 (reverse)

seq1  TATA-GCCTAGA-GCA-GTACTTGTAGTATAATAGACACTGAATACAAGC  47
      |||| ||||||| ||| |||||||||||   |||| | |||||| | |||
seq2  TATACGCCTAGAGGCAGGTACTTGTAGTTATATAG-CGCTGAAT-CCAGC  48

seq1  AC-TCGAGTTTTTCCACATCATGTGGTAAAGAGACAGAGTCATTTCATCC  96
      || | ||||||||||||||||||| |||||||| ||||||||||||||||
seq2  ACTTGGAGTTTTTCCACATCATGT-GTAAAGAG-CAGAGTCATTTCATCC  96

seq1  ACTTGAATTGAGCACACTGTAACACATAACCTTCTAAAATGGCCCACAGT  146
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTTGGATTGAGCACACTGT-ACACATAACCTTCTAAAATGGCCCACAGT  145

seq1  GGTTCTTGGTGTTTTATTCTTAATGCTTTAAAGGTTTAAGTAAGCTATTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGGTGTTTTATTCTTAATGCTTTAAAGGTTTAAGTAAGCTATTG  195

seq1  TTCTTAAAATTAAAGATATGCATTTTTTATATA-CCCTTTATCTTACCCT  245
       |||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  -TCTTAAAA-TAAAGATATGCATTTTTTATATACCCCTTTATCTTACCCT  243

seq1  GACTAAAAGCAAAGTACATTCCTATCATTAC-AAAGAACTTCTGTTCTAT  294
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACTAAAAGCAAAGTACATTCCTATCATTACAAAAGAACTTCTGTTCTAT  293

seq1  AGAAATATGTTAACCAACCTCCTAGCCACCGGGAGGTCCCTAATTCTCAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGTTAACCAACCTCCTAGCCACCGGGAGGTCCCTAATTCTCAC  343

seq1  AAGGACATAATTGAGATTTTCTAATATGAAACTCCAGCTAAGGTTATTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATAATTGAGATTTTCTAATATGAAACTCCAGCTAAGGTTATTCA  393

seq1  TAAAGCAGGTGCATTTTAATGAATTCAGTTGGGTGACTGTAATCGTTAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGGTGCATTTTAATGAATTCAGTTGGGTGACTGTAATCGTTAAT  443

seq1  TGCTAAATATATAACTCAGCCTTAGCAAATTTCCTTTGGATCTTGATCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATATATAACTCAGCCTTAGCAAATTTCCTTTGGATCTTGATCAT  493

seq1  TTATAATTTTTAAGAATCAAAAAGTCAAAGTGTCCTTAGCCATTTTCAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTTTAAGAATCAAAAAGTCAAAGTGTCCTTAGCCATTTTCAAC  543

seq1  CTCAGAGAAACACTCATTGGAAACATCTGAAATTGCCAGATGCCCTGAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAAACACTCATTGGAAACATCTGAAATTGCCAGATGCCCTGAGA  593

seq1  ATTTTATTTTTAAAAACCTTTTCCCAAGAAGTTATTTATAATACTGTGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTTAAAAACCTTTTCCCAAGAAGTTATTTATAATACTGTGTC  643

seq1  AAAATGGGACACTTCAACTGTGAGTGCTAATTCCTGATGTATGTTATCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGACACTTCAACTGTGAGTGCTAATTCCTGATGTATGTTATCAT  693

seq1  TTTCTCCATTTGTCATATTTTTTCTAAAGGGCATTAAATTTAGCTTTTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCATTTGTCATATTTTTTCTAAAGGGCATTAAATTTAGCTTTTGA  743

seq1  CTCTAAATTTAAACCCCTCTATTCCTGTCTCTCATTTGTTCTCTCTCTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAATTTAAACCCCTCTATTCCTGTCTCTCATTTGTTCTCTCTCTCT  793

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCTTCCTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCTTCCTG  843

seq1  TTCATATTTTTTTCTACTTTTCCTTTCTGTCTCTCTTTTGTTTTAGGTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTTTTTCTACTTTTCCTTTCTGTCTCTCTTTTGTTTTAGGTTT  893

seq1  CCCTGGAGATATTATCATTGAGTAGGAGAAGTATATGGAAGAAAAAGAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGATATTATCATTGAGTAGGAGAAGTATATGGAAGAAAAAGAAG  943

seq1  AAAATTAACTGATTATCTTGGAGAATGTGCTACAAGTTCTTCTGTATTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAACTGATTATCTTGGAGAATGTGCTACAAGTTCTTCTGTATTTA  993

seq1  ATTTCATCAACTTTTCAAAATTATTATAAGTGGAATTC  1032
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCAACTTTTCAAAATTATTATAAGTGGAATTC  1031