BAC Information

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BAC

Clone NameB6Ng01-018I17
Chromosome2 (Build37)
Map Location 156,643,955 - 156,767,314
singlet/doubletdoublet
Overlap geneTgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3
Upstream geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546
Downstream geneLOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018I17.bB6Ng01-018I17.g
ACCDH851915DH851916
length1,0691,002
definitionDH851915|Mus musculus domesticus DNA, BAC clone: B6Ng01-018I17, 5' end.DH851916|Mus musculus domesticus DNA, BAC clone: B6Ng01-018I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,643,955 - 156,645,029)(156,766,312 - 156,767,314)
sequence
gaattcactctgtagaccagtatggccttgaactcagaaatccacctgcc
tctgcctcctgagtgctgggatcaaaggcatgcgccaccacacccggctg
actccaaacattctaagcacacatcttttatacagtttggggggacatac
tttggtaacagcaagagttggtaaaagctcactggtagtccacggtgacc
tttctcagcattggtcgtcttagatggggtgaggtccacctcatctctag
aggagaaactgcattgtctgcacctgacataccctgctctgtgcttaggg
ccttcctgtttttctggcacattcaggacattctgggaagggggtgtcat
aacccttctttggaaagtcgtcaaggtcttatttctggtaagacttgtct
agtggccattttatgttttcttagggtcttacattaccccctttttcttg
tgactatttcaatcttgaaatcatagttcactctggttcaattcttgatc
ctgttgtctcagtatcataatctgaaccgtgcttatgcattccctagtaa
aagctagcaagcagtttagaatacagggaccaaaagtcaaaagcaacatc
aggattagcaatcaatggtcaatttagtcaaggtctcttttagagttctg
ttcatcctctctacctgccctgagctttgaggtctgtaaatacagtgaag
tttccaatcgacctctaggtacctggtcactccctggcttaccttggcaa
tgaaggcagggccattgtcagatccgattaccttgggtactccaaatcgg
gggaaaatttctttctagaatcttcttaatgaccactgtggcagtctctt
gcttgggtagggaatgcttctacccatcctgagaaagttgtctataaaga
ctagagatatttgtagccatacttgcctggtttttactttggtgaagctt
ctttcccagtagctgctggctatcggctcagagtctcttactggggtcag
cttattctgcagccgtcactttctgacaggcaccagctgtgaatgatttg
ttccacaggggttcagccc
gaattccatccagaatccaggcagaagcctaacggggaactggcaagatg
agttgagctgaaatttgtttctgaaaatagactgtctccagatttacaca
gattgccgcgtttattagactgtgagatgcatcgttttgaaatgggaaga
attgggagagaaatgttcaaaatgtgagaacattctgtaaatatagcttt
tcctcccactccctgaaataaagatggctaaaactggaaggaaccttatt
ttttgtgtcttggatgtcttgggcagggtggtaagttgatctctacccac
catcaacccagtgtaaatgcaaaactaggggcagggaggaggcagcagag
gccaccgtcccagactgcacgtttcagagcactacctaacatgttccctc
acacggtccttcaaccctccttttccctctccacccccttctctctctcc
tttttagctttctttttatctttttctttttgagattaggtctcccaagg
tcactagggttaatctccaagtccagtgctgaagtaaactaaaccttcta
ccccggccttctgaattcatgggtctgtaggtgtaactataaaataccct
gctacaatgcccctatttcaaagtatgccatactaccttagaatggaaat
ttaacctttttcagacttcctatgtttctttgaaaatactgtgtcacaca
aatatatcacactaaatttgtagggtttgtctggttttgaaaaaatggtc
tctctctgtagcatatgctgacagtaacttcctatacatcccgtctaact
tcaaactatgggtcctcctcccttaacctctctcatcctagtaactggga
ttacagttgtttgccaccatgccctgtgacctctgttttatttgaggaat
aatgtttggacagaaagaacactttctttagtggacagcctgtgaaatac
tcacacttgctaactctaataacaacattttgggtttttttgggttttgg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_156643955_156645029
seq2: B6Ng01-018I17.b_42_1110

seq1  GAATTCACTCTGTAGACCAGTATGGCCTTGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGTATGGCCTTGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCTGAGTGCTGGGATCAAAGGCATGCGCCACCACACCCGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGAGTGCTGGGATCAAAGGCATGCGCCACCACACCCGGCTG  100

seq1  ACTCCAAACATTCTAAGCACACATCTTTTATACAGTTTGGGGGGACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAACATTCTAAGCACACATCTTTTATACAGTTTGGGGGGACATAC  150

seq1  TTTGGTAACAGCAAGAGTTGGTAAAAGCTCACTGGTAGTCCACGGTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAACAGCAAGAGTTGGTAAAAGCTCACTGGTAGTCCACGGTGACC  200

seq1  TTTCTCAGCATTGGTCGTCTTAGATGGGGTGAGGTCCACCTCATCTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGCATTGGTCGTCTTAGATGGGGTGAGGTCCACCTCATCTCTAG  250

seq1  AGGAGAAACTGCATTGTCTGCACCTGACATACCCTGCTCTGTGCTTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAACTGCATTGTCTGCACCTGACATACCCTGCTCTGTGCTTAGGG  300

seq1  CCTTCCTGTTTTTCTGGCACATTCAGGACATTCTGGGAAGGGGGTGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTTTTTCTGGCACATTCAGGACATTCTGGGAAGGGGGTGTCAT  350

seq1  AACCCTTCTTTGGAAAGTCGTCAAGGTCTTATTTCTGGTAAGACTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCTTTGGAAAGTCGTCAAGGTCTTATTTCTGGTAAGACTTGTCT  400

seq1  AGTGGCCATTTTATGTTTTCTTAGGGTCTTACATTACCCCCTTTTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCATTTTATGTTTTCTTAGGGTCTTACATTACCCCCTTTTTCTTG  450

seq1  TGACTATTTCAATCTTGAAATCATAGTTCACTCTGGTTCAATTCTTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATTTCAATCTTGAAATCATAGTTCACTCTGGTTCAATTCTTGATC  500

seq1  CTGTTGTCTCAGTATCATAATCTGAACCGTGCTTATGCATTCCCTAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCTCAGTATCATAATCTGAACCGTGCTTATGCATTCCCTAGTAA  550

seq1  AAGCTAGCAAGCAGTTTAGAATACAGGGACCAAAAGTCAAAAGCAACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGCAAGCAGTTTAGAATACAGGGACCAAAAGTCAAAAGCAACATC  600

seq1  AGGATTAGCAATCAATGGTCAATTTAGTCAAGGTCTCTTTTAGAGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGCAATCAATGGTCAATTTAGTCAAGGTCTCTTTTAGAGTTCTG  650

seq1  TTCATCCTCTCTACCTGCCCTGAGCTTTGAGGTCTGTAAATACAGTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCTCTACCTGCCCTGAGCTTTGAGGTCTGTAAATACAGTGAAG  700

seq1  TTTCCAATCGACCTCTAGGTACCTGGTCACTCCCTGGCTTACCTTGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATCGACCTCTAGGTACCTGGTCACTCCCTGGCTTACCTTGGCAA  750

seq1  TGAAGGCAGGGCCATTGTCAGATCCGATTACCTTGGGTACTCCAAATCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGGGCCATTGTCAGATCCGATTACCTTGGGTACTCCAAATCGG  800

seq1  GGGAAAATTTC-TTCTAGAATCTTCTTAATGACCACTGTGGCAGTCTCTT  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATTTCTTTCTAGAATCTTCTTAATGACCACTGTGGCAGTCTCTT  850

seq1  GCTT-GGTAGGGAAGGCTTCTACCCATCCTGAG-AAGGTGTCTATAAAGA  897
      |||| ||||||||| |||||||||||||||||| ||| ||||||||||||
seq2  GCTTGGGTAGGGAATGCTTCTACCCATCCTGAGAAAGTTGTCTATAAAGA  900

seq1  CTAGAAGATATTTGTAGCCATACTTGCCTGG-TTTTACCTTGGTGAAGCC  946
      |||| |||||||||||||||||||||||||| |||||| |||||||||| 
seq2  CTAG-AGATATTTGTAGCCATACTTGCCTGGTTTTTACTTTGGTGAAGCT  949

seq1  TCCTTCCCAGTAGGCTGCTGGCTTATCGCCTCAGAGTCTCTTACTGGGGT  996
      || ||||||||| ||||||||| ||||| |||||||||||||||||||||
seq2  TCTTTCCCAGTA-GCTGCTGGC-TATCGGCTCAGAGTCTCTTACTGGGGT  997

seq1  CAGCCTTATTTCTGCAAGCGTTCACCTTCTGACAGGGCACACAGCTGTGA  1046
      ||| |||| |||||| |||  |||| |||||||| ||||| |||||||||
seq2  CAG-CTTA-TTCTGC-AGCCGTCACTTTCTGACA-GGCAC-CAGCTGTGA  1042

seq1  ATGATTTGTTCCACCAGGTGTTTCAGCCC  1075
      ||||||||||||| |||| | ||||||||
seq2  ATGATTTGTTCCA-CAGG-GGTTCAGCCC  1069

seq1: chr2_156766312_156767314
seq2: B6Ng01-018I17.g_66_1067 (reverse)

seq1  CACCAAAACCCAAAAAAACCCAAAATGGTGTTAATAGAGTTAGCAAGTGT  50
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  CACCAAAACCCAAAAAAACCCAAAATGTTGTTATTAGAGTTAGCAAGTGT  50

seq1  GAGTATTTCACAGGCTGTCCACTAAAGGAAGGTGTTCTTTTCTGTCCAAA  100
      |||||||||||||||||||||||||| ||| |||||| ||||||||||||
seq2  GAGTATTTCACAGGCTGTCCACTAAA-GAAAGTGTTC-TTTCTGTCCAAA  98

seq1  CATTATTCCTC-AATAAAACAAGAGGTCACAGGGCATGGTGGCAAACAAC  149
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  CATTATTCCTCAAATAAAAC-AGAGGTCACAGGGCATGGTGGCAAACAAC  147

seq1  TGTAATCCCAGTTACTAGGATGAGAGAGGTTAAGGGAGGAGGA-CCATAG  198
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTAATCCCAGTTACTAGGATGAGAGAGGTTAAGGGAGGAGGACCCATAG  197

seq1  TTTGAAGTTAGACGGGATGTATAGGAAGTTACTGGTCAGCATATGCTACA  248
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGAAGTTAGACGGGATGTATAGGAAGTTACT-GTCAGCATATGCTACA  246

seq1  GAGAGAGACCATTTTTTC-AAACCAGACAAACCCTACAAATTTAGTGTGA  297
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGAGAGACCATTTTTTCAAAACCAGACAAACCCTACAAATTTAGTGTGA  296

seq1  TATATTTGTGTGACACAGTATTTTCAAAGAAACATAGGAAGTCTGAAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTGTGACACAGTATTTTCAAAGAAACATAGGAAGTCTGAAAAA  346

seq1  GGTTAAATTTCCATTCTAAGGTAGTATGGCATACTTTGAAATAGGGGCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATTTCCATTCTAAGGTAGTATGGCATACTTTGAAATAGGGGCAT  396

seq1  TGTAGCAGGGTATTTTATAGTTACACCTACAGACCCATGAATTCAGAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGGGTATTTTATAGTTACACCTACAGACCCATGAATTCAGAAGG  446

seq1  CCGGGGTAGAAGGTTTAGTTTACTTCAGCACTGGACTTGGAGATTAACCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGTAGAAGGTTTAGTTTACTTCAGCACTGGACTTGGAGATTAACCC  496

seq1  TAGTGACCTTGGGAGACCTAATCTCAAAAAGAAAAAGATAAAAAGAAAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACCTTGGGAGACCTAATCTCAAAAAGAAAAAGATAAAAAGAAAGC  546

seq1  TAAAAAGGAGAGAGAGAAGGGGGTGGAGAGGGAAAAGGAGGGTTGAAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGAGAGAGAGAAGGGGGTGGAGAGGGAAAAGGAGGGTTGAAGGA  596

seq1  CCGTGTGAGGGAACATGTTAGGTAGTGCTCTGAAACGTGCAGTCTGGGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGAGGGAACATGTTAGGTAGTGCTCTGAAACGTGCAGTCTGGGAC  646

seq1  GGTGGCCTCTGCTGCCTCCTCCCTGCCCCTAGTTTTGCATTTACACTGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTCTGCTGCCTCCTCCCTGCCCCTAGTTTTGCATTTACACTGGG  696

seq1  TTGATGGTGGGTAGAGATCAACTTACCACCCTGCCCAAGACATCCAAGAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTGGGTAGAGATCAACTTACCACCCTGCCCAAGACATCCAAGAC  746

seq1  ACAAAAAATAAGGTTCCTTCCAGTTTTAGCCATCTTTATTTCAGGGAGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAATAAGGTTCCTTCCAGTTTTAGCCATCTTTATTTCAGGGAGTG  796

seq1  GGAGGAAAAGCTATATTTACAGAATGTTCTCACATTTTGAACATTTCTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAAGCTATATTTACAGAATGTTCTCACATTTTGAACATTTCTCT  846

seq1  CCCAATTCTTCCCATTTCAAAACGATGCATCTCACAGTCTAATAAACGCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTCTTCCCATTTCAAAACGATGCATCTCACAGTCTAATAAACGCG  896

seq1  GCAATCTGTGTAAATCTGGAGACAGTCTATTTTCAGAAACAAATTTCAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGTGTAAATCTGGAGACAGTCTATTTTCAGAAACAAATTTCAGC  946

seq1  TCAACTCATCTTGCCAGTTCCCCGTTAGGCTTCTGCCTGGGTTCTGGATG  997
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAACTCATCTTGCCAGTTCCCCGTTAGGCTTCTGCCTGGATTCTGGATG  996

seq1  GAATTC  1003
      ||||||
seq2  GAATTC  1002