BAC Information

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BAC

Clone NameB6Ng01-018K21
Chromosome2 (Build37)
Map Location 126,669,973 - 126,810,041
singlet/doubletdoublet
Overlap geneTrpm7, 2010106G01Rik
Upstream geneCops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50
Downstream geneAp4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018K21.bB6Ng01-018K21.g
ACCDH852011DH852012
length573984
definitionDH852011|Mus musculus domesticus DNA, BAC clone: B6Ng01-018K21, 5' end.DH852012|Mus musculus domesticus DNA, BAC clone: B6Ng01-018K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,809,463 - 126,810,041)(126,669,973 - 126,670,955)
sequence
cttttcactttaagcattagcagttactggaatttcaaacagctaattat
aaattaagactgaccctttccagttggctcctaactttaggtttaattat
ggccatgtagatgtataattttctttctttctttcttttcttttcttttt
ttttttttttttttcttttagcgtttatgaggctttgggtacaagtctgg
gcacttcattaagaatgtcaaatgtttcccatctatctcatgactgttat
aacttcaatggctactggaaattttttgcagatggacaaatttgtctctc
aagatcattttttgacactgagtttaaagtgtatttcccgaggcagaagt
aaaaattgcacttttcatatttcagctgcgatttatttcaccaccaattc
aacaatccttttctcggctctttccagcttgctcacctttgtgttaaaat
ttgttctttgttgttcttccagattatctatgaacaataagctcacagta
tctgtaaagctaaaaagctctctttttgtttttttgttttgtttgttgtt
gtttgtttgtgttttgttttgtt
gaattcagtactggataagctataacactctatattgtaaaatctgctat
actctacactcaccctccttcctctgtctgtttgtggatataggctagta
aatctgcagctctgcctgtcccttcacacacaacaactggaactgggggg
ctttcctgaaggtactccagtactgtaaggatgacatttggcccgccttc
aaatatcaaagccaccacaggaactccttgcccaattcctgaaaagggta
aaagtttaattagtaaatatgagaaaactcagtaaattaatcttatttat
tttaaataaaaaaattaaaataaaattacatgtgaaacagttggctttac
cttgaacactgaatgttagcaataaccagtatatttataaaaaaccgagc
acctataacaagagctctcaacatttattcactgaaatctgttcaagcaa
ctagaatgtgtgtattaaccgaagataagcctttgtgtttttactaattg
actttctttctgacaagatatgttaggattaatttgtggcttagtatgtc
tagcttttgctttttattatttttgaaagtcttatatgtataacccaagg
atgcctctagtctcagtcccttgagagctgtgatactattgaaagtcttg
ggctggagagatggctctgtggttaaaagcactgactgctcttccagagg
ttcccagaaaccacatgatggctcacaaccatctgtaatggatcggacgc
cctcttctggtgtgtgaagacagctacggtattatataaataaagataat
tcttagaaagggaggtcagaagaattacactgtctcccccaggagtagaa
atggtctgagacactgactgggtgctggggactgaacgcaaacctctgcc
agaataacaagcactcgcagccccaaaaacatatttcttttaattactca
attttacaaacagtggggactcctattattatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126809463_126810041
seq2: B6Ng01-018K21.b_46_624 (reverse)

seq1  AACAAAACAAAACACAAACAAACAACAACAAACAAAACAAAAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACACAAACAAACAACAACAAACAAAACAAAAAAACAAAA  50

seq1  AGAGAGCTTTTTAGCTTTACAGATACTGTGAGCTTATTGTTCATAGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTTTTTAGCTTTACAGATACTGTGAGCTTATTGTTCATAGATAA  100

seq1  TCTGGAAGAACAACAAAGAACAAATTTTAACACAAAGGTGAGCAAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGAACAACAAAGAACAAATTTTAACACAAAGGTGAGCAAGCTGG  150

seq1  AAAGAGCCGAGAAAAGGATTGTTGAATTGGTGGTGAAATAAATCGCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCGAGAAAAGGATTGTTGAATTGGTGGTGAAATAAATCGCAGCT  200

seq1  GAAATATGAAAAGTGCAATTTTTACTTCTGCCTCGGGAAATACACTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGAAAAGTGCAATTTTTACTTCTGCCTCGGGAAATACACTTTAA  250

seq1  ACTCAGTGTCAAAAAATGATCTTGAGAGACAAATTTGTCCATCTGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGTCAAAAAATGATCTTGAGAGACAAATTTGTCCATCTGCAAAA  300

seq1  AATTTCCAGTAGCCATTGAAGTTATAACAGTCATGAGATAGATGGGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGTAGCCATTGAAGTTATAACAGTCATGAGATAGATGGGAAAC  350

seq1  ATTTGACATTCTTAATGAAGTGCCCAGACTTGTACCCAAAGCCTCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACATTCTTAATGAAGTGCCCAGACTTGTACCCAAAGCCTCATAAA  400

seq1  CGCTAAAAGAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAGAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAAAGAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAGAAAGAAA  450

seq1  GAAAATTATACATCTACATGGCCATAATTAAACCTAAAGTTAGGAGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTATACATCTACATGGCCATAATTAAACCTAAAGTTAGGAGCCAA  500

seq1  CTGGAAAGGGTCAGTCTTAATTTATAATTAGCTGTTTGAAATTCCAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGGGTCAGTCTTAATTTATAATTAGCTGTTTGAAATTCCAGTAA  550

seq1  CTGCTAATGCTTAAAGTGAAAAGGAATTC  579
      |||||||||||||||||||||||||||||
seq2  CTGCTAATGCTTAAAGTGAAAAGGAATTC  579

seq1: chr2_126669973_126670955
seq2: B6Ng01-018K21.g_66_1049

seq1  GAATTCAGTACTGGATAAGCTATAACACTCTATATTGTAAAATCTGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTGGATAAGCTATAACACTCTATATTGTAAAATCTGCTAT  50

seq1  ACTCTACACTCACCCTCCTTCCTCTGTCTGTTTGTGGATATAGGCTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACACTCACCCTCCTTCCTCTGTCTGTTTGTGGATATAGGCTAGTA  100

seq1  AATCTGCAGCTCTGCCTGTCCCTTCACACACAACAACTGGAACTGGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCAGCTCTGCCTGTCCCTTCACACACAACAACTGGAACTGGGGGG  150

seq1  CTTTCCTGAAGGTACTCCAGTACTGTAAGGATGACATTTGGCCCGCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGAAGGTACTCCAGTACTGTAAGGATGACATTTGGCCCGCCTTC  200

seq1  AAATATCAAAGCCACCACAGGAACTCCTTGCCCAATTCCTGAAAAGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAAGCCACCACAGGAACTCCTTGCCCAATTCCTGAAAAGGGTA  250

seq1  AAAGTTTAATTAGTAAATATGAGAAAACTCAGTAAATTAATCTTATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAATTAGTAAATATGAGAAAACTCAGTAAATTAATCTTATTTAT  300

seq1  TTTAAATAAAAAAATTAAAATAAAATTACATGTGAAACAGTTGGCTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAAAAAATTAAAATAAAATTACATGTGAAACAGTTGGCTTTAC  350

seq1  CTTGAACACTGAATGTTAGCAATAACCAGTATATTTATAAAAAACCGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACACTGAATGTTAGCAATAACCAGTATATTTATAAAAAACCGAGC  400

seq1  ACCTATAACAAGAGCTCTCAACATTTATTCACTGAAATCTGTTCAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAACAAGAGCTCTCAACATTTATTCACTGAAATCTGTTCAAGCAA  450

seq1  CTAGAATGTGTGTATTAACCGAAGATAAGCCTTTGTGTTTTTACTAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGTGTGTATTAACCGAAGATAAGCCTTTGTGTTTTTACTAATTG  500

seq1  ACTTTCTTTCTGACAAGATATGTTAGGATTAATTTGTGGCTTAGTATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTCTGACAAGATATGTTAGGATTAATTTGTGGCTTAGTATGTC  550

seq1  TAGCTTTTGCTTTTTATTATTTTTGAAAGTCTTATATGTATAACCCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTGCTTTTTATTATTTTTGAAAGTCTTATATGTATAACCCAAGG  600

seq1  ATGCCTCTAGTCTCAGTCCCTTGAGAGCTGTGATACTATTGAAAGTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTAGTCTCAGTCCCTTGAGAGCTGTGATACTATTGAAAGTCTTG  650

seq1  GGCTGGAGAGATGGCTCTGTGGTTAAAAGCACTGACTGCTCTTCCAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGAGATGGCTCTGTGGTTAAAAGCACTGACTGCTCTTCCAGAGG  700

seq1  TTCCCAGAAACCACATGATGGCTCACAACCATCTGTAATGGATCGGACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAAACCACATGATGGCTCACAACCATCTGTAATGGATCGGACGC  750

seq1  CCTCTTCTGGTGTGTGAAGACAGCTACGGTATTATATAAATAAAGATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTCTTCTGGTGTGTGAAGACAGCTACGGTATTATATAAATAAAGATAAT  800

seq1  TCTTAGAAAGGGAGGTCAGAAGAA-TACACTGTCTCCCCCAGGAGTAGAA  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTTAGAAAGGGAGGTCAGAAGAATTACACTGTCTCCCCCAGGAGTAGAA  850

seq1  ATGGTCTGAGACACTGACTGGGTGCTGGGGACTGAACGCAAAACCTCTGC  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGTCTGAGACACTGACTGGGTGCTGGGGACTGAACGC-AAACCTCTGC  899

seq1  CAGAATAACAAGCACTCGCAGCCCCCAAAACATATTTCTTTAAATTACTC  949
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  CAGAATAACAAGCACTCGCAGCCCCAAAAACATATTTCTTTTAATTACTC  949

seq1  AATTTCACAAACAGT-GTGACT-CTATTATGTATGC  983
      ||||| ||||||||| | |||| ||||||| |||||
seq2  AATTTTACAAACAGTGGGGACTCCTATTAT-TATGC  984