BAC Information

Click to search

BAC

Clone NameB6Ng01-018L03
Chromosome2 (Build37)
Map Location 80,331,573 - 80,332,070
singlet/doubletsinglet
Overlap genenone
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018L03.bB6Ng01-018L03.g
ACCDH852023DH852024
length666978
definitionDH852023|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L03, 5' end.DH852024|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctggtggaatctttaggatcatatatatatatatatatatata
catactctcatatcatctgcaaatagtggtatttttacttctccctttcc
aattggtatccccttgacctacttatgttgtctaatttctctggggagga
ctttgagtactataccgaataggtagggagaaagtgggcagctttgtcta
atccctgattttagtgggattgctccatttagtttgatgatggctactag
tttgctgtagattgctttaattatgtttaggtatgggtcttgaattcctg
atctttccaagacttttatcatgaaggggtgttggattttgtcaaattgt
ttctcagcatctaacgagatgatcatgtgtattttgtctttgagtttgtt
tatatagtggattacattgatggatgtccatatattaaaccatccctgca
tgcatccctaggatgaaacctagttgatcataatgaatgattgttttgat
gtattcttgaattcagttagtgaggattttattgagtatttttgaagcaa
tatacataagggaaattggtctgaagttctgtctcttcgttgggtctttg
tgtggtttaggtttcagagtaattgtggcttcatagaatgaattgggtag
agtatcttctgtttct
gaattcctttgaatcagtaaattactgttggtatgatgacattttgtatt
acattaatcacctgattgcaggatcatgagagacctttgcatcttctaat
ggcttcttctatttaattcttcagaaacttggagttctcttcatgcaggt
attttgcttgctcagatagagttataccaataaatttggtatttttctct
tttgtagggtgttgttgccctaatttcttcctcatcctggttatcttgaa
ttaactctctatctaccactttgaaaaaggcattttccatctctagcatt
gctctggaagaatctgaagtgtctttcatatatagtataaatgcatctgt
gaatagagacactgtgacttcttccttcccaaactgtgcccttcaattgg
catcagttgtctatagctctagctagaccaccaaattctatattgcatat
ataggcagttatttgactgcattgtgttcaccatgtcattgattcattaa
tggaactgctccacctttctctcccttaatctgaggttggttatcagctt
gctgtatattgcttttattgtgtttatgtgtacgccttttatccctggtc
tctatagcacttttatcatgaaagagtgctggattttgtcaaaaaatttt
cagcatctgatgagatgaccatgtatccttttactttccacttgtttata
tggtggaaatatgctgctgtattttcctaaaatgaaccattcctgcatcc
ctggaataaagcctacaggatcatgattgatgattattatcacatcttct
tcaattttgattccacttgtgttatttagtatttggtatcaatatttata
tggcaaacttgtctaaattctatcaactttatttgtagagtcattgttgt
gtggtctgtgtatcaacatggctgtgacctcataggatagatagatagat
agatagatagttagatgggatggatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80331573_80332070
seq2: B6Ng01-018L03.b_220_709 (reverse)

seq1  AGAAGCAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTC  50
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAAGATACTCTACCCAATTCATTCTATGAAGCCACAATTACTC  50

seq1  TGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCA  100
      ||| |||||||||||| ||||||||||| |||| | ||||||||||||||
seq2  TGAAACCTAAACCACACAAAGACCCAACGAAGAGACAGAACTTCAGACCA  100

seq1  ATTTCCCTTATGAATATCGATGATAAAATACTCAATAAAATTCTCGCTAA  150
      |||||||||||| |||| | |   ||||||||||||||||| ||| ||||
seq2  ATTTCCCTTATGTATATTGCTTCAAAAATACTCAATAAAATCCTCACTAA  150

seq1  CCAAATCCAAGAACACATCAAAACCATCATCCATCCTGACCAAGTAGGTT  200
      |  ||| |||||| |||||||||| ||||| |||  ||| ||| ||||||
seq2  CTGAATTCAAGAATACATCAAAACAATCATTCATTATGATCAACTAGGTT  200

seq1  TCATTCCAGGG----ATGCAGGGATGGTTTAATATATGGAAATTCATCAA  246
      |||| | ||||    ||||||||||||||||||||||||| || ||||||
seq2  TCATCCTAGGGATGCATGCAGGGATGGTTTAATATATGGACATCCATCAA  250

seq1  CGTAATCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCATCT  296
       ||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TGTAATCCACTATATAAACAAACTCAAAGACAAAATACACATGATCATCT  300

seq1  CGTTAGATGCGGAGAAAGCATTTGACAAAATCTAACACCCATTCATGATA  346
      |||||||||| ||||||  ||||||||||||| ||||||| |||||||||
seq2  CGTTAGATGCTGAGAAACAATTTGACAAAATCCAACACCCCTTCATGATA  350

seq1  AAAGCCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAA  396
      |||| ||||||||||||||||||||||| ||||||||||||||| || ||
seq2  AAAGTCTTGGAAAGATCAGGAATTCAAGACCCATACCTAAACATAATTAA  400

seq1  AGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAGC  446
      ||||||||||||||||| |||||||| ||||||| |||||||        
seq2  AGCAATCTACAGCAAACTAGTAGCCATCATCAAACTAAATGG--------  442

seq1  TGGAAGCATTCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCT  496
          |||| |||||||||||||||||| ||||||| ||||||||||||||
seq2  ----AGCAATCCCACTAAAATCAGGGATTAGACAAAGCTGCCCACTTTCT  488

seq1  CC  498
      ||
seq2  CC  490