BAC Information

Click to search

BAC

Clone NameB6Ng01-019B23
Chromosome2 (Build37)
Map Location 104,616,182 - 104,617,091
singlet/doubletsinglet
Overlap geneQser1
Upstream geneCaprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7
Downstream geneLOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019B23.bB6Ng01-019B23.g
ACCDH852308DH852309
length910408
definitionDH852308|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B23, 5' end.DH852309|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctatcctagatcaatgtgcctgggttgtctgcagcatgaatcta
gaaggtaactagtctgactaactgtgtgataggtattcgaatgtgcggat
gaccctagatactctaatcaatctgctgtcatcagtgggcctagtttaat
taagatcaccgcccattttgagatttagcatgggacaaatcttaagaggt
ctcagcctgatgcatttgtacatcagaacttcgtggccaccacagcatca
gagctagatttggctttccacatctcatattctctggaaaatgaatccat
acggagtttggtagagataaagattgaggtaatatccccttaataattga
acatagagttccagtctcaatctatttcatgacaatgctgtgggagtcat
ttgagttgtatatagcacatggactttattttggaagtgttggtctgagc
aagtttattattttcttataaatcataaaagtcctttctcttttttaatc
ttaaaagatttaatgattttaataaaatttgttttaacattgcagaaata
ttccatctaagccaagtagtatcagtaaaacttctgacccaccagtatca
aaaactacaactacaaaaaccccgtctacaaaacccaaagctaaacagct
caaaataaaggctgagccaccaccaaagaaaaggaagaaatggaaggaag
aattttcatcatcacaatctgaatcatctcctgaggtccgttctagcagt
agtgaggatgagggtgagttccccaagaaattagtgttttgatgcttaca
ggtggtgtgcaggagtgaagggggatgggtggtggtggcacttcaaatcg
gttttgcttagtacagagtgaagctatcggataaagttctctatgcattt
gtttaaccac
acagaaatctacctgcctgcacgtttgtcaacatgcccaatttatacagt
gctggcactgagctcaatgtcttgtgcatgccaggcaagtgcataagtca
gggttctctagaggaacagaacaaacacatacatgtatgtgtttgtatgt
gtgtatggggtttatgagaatgatttacaggctgtggtgtgcctactcca
acaatggctgtctaccaaggaaagtctaagaatccagtaattcttaagtt
catgaggctggatatgtcacctggtcttcagtatatgccagaatcttgaa
gaagtagactctaatgccagtaaaggaatagactgtccagtgaaagcaag
aataggtttttttttataggctgctaccataaggtgtggtccagattaaa
gatggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_104616182_104617091
seq2: B6Ng01-019B23.b_41_950 (reverse)

seq1  GTGGTTTATACAAA-GCATAGTGAACTTTGTACAGTAGCATCACTCTGGT  49
      |||| ||| ||||| |||||| ||||||| | |  |||| ||||||| ||
seq2  GTGG-TTAAACAAATGCATAGAGAACTTTATCCGATAGCTTCACTCT-GT  48

seq1  ACTAAGCAAACCCGATCTGAACTGCCACCACCA-CCATCCCCCTTCACTC  98
      |||||||||| ||||| |||| ||||||||||| ||||||||||||||||
seq2  ACTAAGCAAAACCGATTTGAAGTGCCACCACCACCCATCCCCCTTCACTC  98

seq1  CTGCACACCACCTGTAAGCATCAAAACACTAATTTCTTGGGGAACTCACC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACCACCTGTAAGCATCAAAACACTAATTTCTTGGGGAACTCACC  148

seq1  CTCATCCTCACTACTGCTAGAACGGACCTCAGGAGATGATTCAGATTGTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTCACTACTGCTAGAACGGACCTCAGGAGATGATTCAGATTGTG  198

seq1  ATGATGAAAATTCTTCCTTCCATTTCTTCCTTTTCTTTGGTGGTGGCTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAAATTCTTCCTTCCATTTCTTCCTTTTCTTTGGTGGTGGCTCA  248

seq1  GCCTTTATTTTGAGCTGTTTAGCTTTGGGTTTTGTAGACGGGGTTTTTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATTTTGAGCTGTTTAGCTTTGGGTTTTGTAGACGGGGTTTTTGT  298

seq1  AGTTGTAGTTTTTGATACTGGTGGGTCAGAAGTTTTACTGATACTACTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGTTTTTGATACTGGTGGGTCAGAAGTTTTACTGATACTACTTG  348

seq1  GCTTAGATGGAATATTTCTGCAATGTTAAAACAAATTTTATTAAAATCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGATGGAATATTTCTGCAATGTTAAAACAAATTTTATTAAAATCAT  398

seq1  TAAATCTTTTAAGATTAAAAAAGAGAAAGGACTTTTATGATTTATAAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTTAAGATTAAAAAAGAGAAAGGACTTTTATGATTTATAAGAA  448

seq1  AATAATAAACTTGCTCAGACCAACACTTCCAAAATAAAGTCCATGTGCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAACTTGCTCAGACCAACACTTCCAAAATAAAGTCCATGTGCTA  498

seq1  TATACAACTCAAATGACTCCCACAGCATTGTCATGAAATAGATTGAGACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACTCAAATGACTCCCACAGCATTGTCATGAAATAGATTGAGACT  548

seq1  GGAACTCTATGTTCAATTATTAAGGGGATATTACCTCAATCTTTATCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTATGTTCAATTATTAAGGGGATATTACCTCAATCTTTATCTCT  598

seq1  ACCAAACTCCGTATGGATTCATTTTCCAGAGAATATGAGATGTGGAAAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTCCGTATGGATTCATTTTCCAGAGAATATGAGATGTGGAAAGC  648

seq1  CAAATCTAGCTCTGATGCTGTGGTGGCCACGAAGTTCTGATGTACAAATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTAGCTCTGATGCTGTGGTGGCCACGAAGTTCTGATGTACAAATG  698

seq1  CATCAGGCTGAGACCTCTTAAGATTTGTCCCATGCTAAATCTCAAAATGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCTGAGACCTCTTAAGATTTGTCCCATGCTAAATCTCAAAATGG  748

seq1  GCGGTGATCTTAATTAAACTAGGCCCACTGATGACAGCAGATTGATTAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGATCTTAATTAAACTAGGCCCACTGATGACAGCAGATTGATTAGA  798

seq1  GTATCTAGGGTCATCCGCACATTCGAATACCTATCACACAGTTAGTCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGGGTCATCCGCACATTCGAATACCTATCACACAGTTAGTCAGA  848

seq1  CTAGTTACCTTCTAGATTCATGCTGCAGACAACCCAGGCACATTGATCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACCTTCTAGATTCATGCTGCAGACAACCCAGGCACATTGATCTA  898

seq1  GGATAGGAATTC  910
      ||||||||||||
seq2  GGATAGGAATTC  910