BAC Information

Click to search

BAC

Clone NameB6Ng01-019C24
Chromosome2 (Build37)
Map Location 75,215,901 - 75,415,655
singlet/doubletdoublet
Overlap geneLOC100040324
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019C24.bB6Ng01-019C24.g
ACCDH852355DH852356
length557965
definitionDH852355|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C24, 5' end.DH852356|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,215,901 - 75,216,463)(75,414,689 - 75,415,655)
sequence
tccagcctcttttgaaggcatagtgaaaataaaagcaacacccagaagaa
ctggtctatgagcccttcattctctgcaagatgttcattatcaacgtatc
ttttttcaattttctttgaaaaaaagtctttgttatactgtgtctagttt
ctcctcaaataagcagagtcagacaagtttatatggataaattatggatg
gttaaataagatagataaatagatgaataggtagaaagatgcgtatatat
cttttacatgtattcatataagtgatgctatattggaaaaaatcataatt
tactaacatcgcttatctgaatgaaaatacacaacaattatttctgctct
tggattgatttttcaataacttcagtcagccaatgctagaaaatcatttg
cttctttccctttgagtcatgggtcgaagtctgctgcagtgacattgacc
acgggacagttctgtctgtgagagagaagctgaaggtatgaaacttcaga
aagcacttggtcaacatggctacgtgcctaacagggagggggtgggggtg
tctgtga
gaattcagaaaacagtgtcctccccacccctggttcatttataatgaata
ttcacgttgacatgagagtcagtgttgagaaatgctgtcccagaacagtc
tggctttgccagccagctctcctcaacccagctctcactctgatgaaggg
cgatgtcctcttctccagagctctcagcgtcccttcagtgcatcagttct
gccatcagtgtgcagctacctaccaggaatagtggtgtctcaggtcactg
ctagaaggactgctccttaacttgcatgttttaaaacggagtttgtaagc
ctttcggtcaagggccagagagcgggtagttttggttttctcgttatgtg
gtctcgtttgctggaactctattctccagcagtcgagtggaggaagttgg
agttcttggtcccaggcctttatgagaggatggtgtgcaaagttgttgct
acaggggtgagggtgggagtgagcaaatatcacctctgctgcaggtgtta
ataatatatatttttagtaataatgactgtcctataagtttttttatgtg
acacaaaatagtattttttgacctgctttcccaaccattacaaaatggag
agctgggtgtggaggtataggcctgtaatctcagcacttaggatcctgaa
agcctgagataggataatcaaaagcctggggatagcctgagctacgtaac
aaaagcctggctcaaagcaaaaaaaaaaaaaaaaagttagtctgtagcct
gtagtctgttggacctagttaagggcattgacaggctgagacatatttgg
aaggtaccaaataattgctgataaatgttattgtttccgggacccatgac
ttcagactgcttcatttctcctcatggttaagaggagctatcatggctga
aggtatattcaaatctgtgaggtgaggatgcatattgtctccgatcgcaa
gttcctcattcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75215901_75216463
seq2: B6Ng01-019C24.b_42_604

seq1  GAATTCTCCAGCCTCTTTTGAAGGCATAGTGAAAATAAAAGCAACACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGCCTCTTTTGAAGGCATAGTGAAAATAAAAGCAACACCCA  50

seq1  GAAGAACTGGTCTATGAGCCCTTCATTCTCTGCAAGATGTTCATTATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTGGTCTATGAGCCCTTCATTCTCTGCAAGATGTTCATTATCAA  100

seq1  CGTATCTTTTTTCAATTTTCTTTGAAAAAAAGTCTTTGTTATACTGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTTTTTTCAATTTTCTTTGAAAAAAAGTCTTTGTTATACTGTGTC  150

seq1  TAGTTTCTCCTCAAATAAGCAGAGTCAGACAAGTTTATATGGATAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTCCTCAAATAAGCAGAGTCAGACAAGTTTATATGGATAAATTA  200

seq1  TGGATGGTTAAATAAGATAGATAAATAGATGAATAGGTAGAAAGATGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTTAAATAAGATAGATAAATAGATGAATAGGTAGAAAGATGCGT  250

seq1  ATATATCTTTTACATGTATTCATATAAGTGATGCTATATTGGAAAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTTTTACATGTATTCATATAAGTGATGCTATATTGGAAAAAATC  300

seq1  ATAATTTACTAACATCGCTTATCTGAATGAAAATACACAACAATTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTACTAACATCGCTTATCTGAATGAAAATACACAACAATTATTTC  350

seq1  TGCTCTTGGATTGATTTTTCAATAACTTCAGTCAGCCAATGCTAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGGATTGATTTTTCAATAACTTCAGTCAGCCAATGCTAGAAAAT  400

seq1  CATTTGCTTCTTTCCCTTTGAGTCATGGGTCGAAGTCTGCTGCAGTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTTCTTTCCCTTTGAGTCATGGGTCGAAGTCTGCTGCAGTGACA  450

seq1  TTGACCACGGGACAGTTCTGTCTGTGAGAGAGAAGCTGAAGGTATGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACGGGACAGTTCTGTCTGTGAGAGAGAAGCTGAAGGTATGAAAC  500

seq1  TTCAGAAAGCACTTGGTCAACATGGCTACGTGCCTAACAGGGAGGGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGCACTTGGTCAACATGGCTACGTGCCTAACAGGGAGGGGGTG  550

seq1  GGGGTGTCTGTGA  563
      |||||||||||||
seq2  GGGGTGTCTGTGA  563

seq1: chr2_75414689_75415655
seq2: B6Ng01-019C24.g_68_1032 (reverse)

seq1  AGAAGAATGAGAACCCTGCAGATCTGGAGACAATACTGCATCCTCACCTC  50
      ||||||||||| | | ||| |||| |||||||||| ||||||||||||||
seq2  AGAAGAATGAGGAACTTGC-GATC-GGAGACAATA-TGCATCCTCACCTC  47

seq1  ACTGATCTG-ATCTACCCTCAGCCATG-TGGCTCCTCTTAACCATGA-GA  97
      || ||| || || |||| ||||||||| | ||||||||||||||||| ||
seq2  ACAGATTTGAATATACCTTCAGCCATGATAGCTCCTCTTAACCATGAGGA  97

seq1  GGAATGGAGCAGTCTGAAGTCATGGGTCCCCGGAAACAATAACATTTATC  147
      | |||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAATGAAGCAGTCTGAAGTCATGGGT-CCCGGAAACAATAACATTTATC  146

seq1  AGCAATTATTT-GTACCTTCCAAATATGTCCTCAGCCTGTCAATGCCCTA  196
      ||||||||||| ||||||||||||||||| ||||||||||||||||||| 
seq2  AGCAATTATTTGGTACCTTCCAAATATGT-CTCAGCCTGTCAATGCCCTT  195

seq1  AACTAGGTCCAACAGACTACAGGCTACAGACTAACTTTTTTTTTTTTTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTCCAACAGACTACAGGCTACAGACTAACTTTTTTTTTTTTTTT  245

seq1  TTGCTTTTGAGCCAGGCTTTTGTTACGTAGCTCAGGCTATCCCCAGGCTT  296
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGC-TTTGAGCCAGGCTTTTGTTACGTAGCTCAGGCTATCCCCAGGCTT  294

seq1  TTGATTATCCTATCTCAGGCTTTCAGGATCCTAAGTGCTGAGATTACAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATCCTATCTCAGGCTTTCAGGATCCTAAGTGCTGAGATTACAGG  344

seq1  CCTATACCTCCACACCCAGCTCTCCATTTTGTAATGGTTGGGAAAGCAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACCTCCACACCCAGCTCTCCATTTTGTAATGGTTGGGAAAGCAGG  394

seq1  TCAAAAAATACTATTTTGTGTCACATAAAAAAACTTATAGGACAGTCATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAATACTATTTTGTGTCACATAAAAAAACTTATAGGACAGTCATT  444

seq1  ATTACTAAAAATATATATTATTAACACCTGCAGCAGAGGTGATATTTGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAAAAATATATATTATTAACACCTGCAGCAGAGGTGATATTTGCT  494

seq1  CACTCCCACCCTCACCCCTGTAGCAACAACTTTGCACACCATCCTCTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCACCCTCACCCCTGTAGCAACAACTTTGCACACCATCCTCTCAT  544

seq1  AAAGGCCTGGGACCAAGAACTCCAACTTCCTCCACTCGACTGCTGGAGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTGGGACCAAGAACTCCAACTTCCTCCACTCGACTGCTGGAGAA  594

seq1  TAGAGTTCCAGCAAACGAGACCACATAACGAGAAAACCAAAACTACCCGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTCCAGCAAACGAGACCACATAACGAGAAAACCAAAACTACCCGC  644

seq1  TCTCTGGCCCTTGACCGAAAGGCTTACAAACTCCGTTTTAAAACATGCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCCTTGACCGAAAGGCTTACAAACTCCGTTTTAAAACATGCAA  694

seq1  GTTAAGGAGCAGTCCTTCTAGCAGTGACCTGAGACACCACTATTCCTGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGAGCAGTCCTTCTAGCAGTGACCTGAGACACCACTATTCCTGGT  744

seq1  AGGTAGCTGCACACTGATGGCAGAACTGATGCACTGAAGGGACGCTGAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCTGCACACTGATGGCAGAACTGATGCACTGAAGGGACGCTGAGA  794

seq1  GCTCTGGAGAAGAGGACATCGCCCTTCATCAGAGTGAGAGCTGGGTTGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGAGAAGAGGACATCGCCCTTCATCAGAGTGAGAGCTGGGTTGAG  844

seq1  GAGAGCTGGCTGGCAAAGCCAGACTGTTCTGGGACAGCATTTCTCAACAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGGCTGGCAAAGCCAGACTGTTCTGGGACAGCATTTCTCAACAC  894

seq1  TGACTCTCATGTCAACGTGAATATTCATTATAAATGAACCAGGGGTGGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTCATGTCAACGTGAATATTCATTATAAATGAACCAGGGGTGGGG  944

seq1  AGGACACTGTTTTCTGAATTC  967
      |||||||||||||||||||||
seq2  AGGACACTGTTTTCTGAATTC  965