BAC Information

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BAC

Clone NameB6Ng01-019M03
Chromosome2 (Build37)
Map Location 100,585,396 - 100,591,000
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019M03.bB6Ng01-019M03.g
ACCDH852752DH852753
length1,1311,102
definitionDH852752|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M03, 5' end.DH852753|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,585,396 - 100,586,286)(100,589,877 - 100,591,000)
sequence
gaattctctacttccgtccctgtaacttgtttgtctgtgttttgttattt
aatgcttaaattatgtactgctctgatcctgttgaacatgtgtgtgtgtg
tgtgtttttcctccctaaagaagtacttctattttgtattttctgagcag
cacagagaatataacataggcaaagaacgaaggctatcttaaaaaatgct
aacagagtttttcaaagttttatataataatggattccaactgaccccaa
aacactcagtactgcaagcataacgtatcaagcaatacatctatgttgct
ttcaatatttattgcttaggtttgccatataaagtcaattttgatatatt
ttctgttttcaggcaaatgcctgtcatagcacatatacaggttcatacat
tgttttctgagtcagtggtatgaacgtatacattaaaataaataagtaaa
aaataaataaagtatataaataaataaattaatagaaagaaaaaagattt
acaactattaatacatttgaatagtaaaagcaggttatgtggaaagccca
aggcaagaaaggtaggttgttatattgttctcttaaaagcaggttaaaca
cacaggctgagaacacagcaggatatcagggtatgtcttaaatgacctca
aggtgcattattaactgagccttgaggtccagcaaaagttctagtctctt
ggaaagaaaaatactttcataaaattgtatcactactgtccctttattat
ttttcagaagttctcttattaactccaaaggagaaaatacagactgagtt
cccatgttggtttctcgaagaggcctcaataaatgtagttcagaaaacta
aacttttcatctttgtgtaaaattgacatcacatcaaaccggataatgat
atattatgaaggcctacaggaaggttctagtacatacaatatactctact
gtattttaccaagattcttccaccattttagaaaattagtttctatctag
accacctttgagaaggccatgagagtacatcttgagccaaaattagaatt
tgctacatgataggtaattttacatggtggagaattactaagaaaaatgt
tccctcttaaattccgtagcatggccatgtt
gaattctatatgagtttatgcacttacctcatattctgcccataaatctg
agctcacagaaacactgcacaatcccagcaaaaccaacctcctaggatta
tttttctaagaagtaagggtaacttttgagtaaaagagaatggatgttta
tcttgctatctagtgtgtagctcttattctctaactgcaaatataatgca
tgtttgaagacaagaatatcaaaatcttgattaaagcttgaggctatgat
ccaaattccccaagataataaatatggtccataacaaagtttctgttcaa
aagccatttattttcagagactgggaatatttgacaacacagtaggcttt
gttctctgaaagtcagtcataatctatctctccaatacataacctattcc
attccctctctatctaggtggtctgcagattctgaaatatttaattgaag
catgattatgaagcccagatctgagtgttttccatgccttatatgttcta
catgtagtttgatatcacccagtatattatttgattgacatgcattttat
gcattttcatcttccactgggcaaaccttaccagagtcttaaagagagta
aggacattgtgaattgctatatatcacccgcttttgtttctgtttcttgc
cttttcagtattttgttcactatattcaaacaacagtacactaacacata
ggaaagaaatatttgtgaactaataaattatttagttacttgtgttaatt
attaaataagcaaaagaatcatcttttcctcaaatttatgtttgaataaa
acattgtttaggatgaaaacaaaaagaaagcagtaatcttcctttggcac
gctgcctgtgcagggagtttctctcacttgtttttaaactttacattggt
tctgcataaaggatgtgagaaaaaacaaagagcaccatggatattttttt
tgtatatttataaagctctctctcttctcttaaaggagaaaaatgatagc
atattttagttgggaatagagtaggagcatgtttcagctgagccctggat
cattgaattgataaatttgaaaggaagtaaaatatagctcaagcttttcc
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100585396_100586286
seq2: B6Ng01-019M03.b_280_1172

seq1  AACTGACCCCAAAACACTCAGTACTGCAAGCATAACGTATCAAGCAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCCCAAAACACTCAGTACTGCAAGCATAACGTATCAAGCAATAC  50

seq1  ATCTATGTTGCTTTCAATATTTATTGCTTAGGTTTGCCATATAAAGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTTGCTTTCAATATTTATTGCTTAGGTTTGCCATATAAAGTCAA  100

seq1  TTTTGATATATTTTCTGTTTTCAGGCAAATGCCTGTCATAGCACATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATATATTTTCTGTTTTCAGGCAAATGCCTGTCATAGCACATATAC  150

seq1  AGGTTCATACATTGTTTTCTGAGTCAGTGGTATGAACGTATACATTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATACATTGTTTTCTGAGTCAGTGGTATGAACGTATACATTAAAA  200

seq1  TAAATAAGTAAAAAATAAATAAAGTATATAAATAAATAAATTAATAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTAAAAAATAAATAAAGTATATAAATAAATAAATTAATAGAAA  250

seq1  GAAAAAAGATTTACAACTATTAATACATTTGAATAGTAAAAGCAGGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGATTTACAACTATTAATACATTTGAATAGTAAAAGCAGGTTAT  300

seq1  GTGGAAAGCCCAAGGCAAGAAAGGTAGGTTGTTATATTGTTCTCTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGCCCAAGGCAAGAAAGGTAGGTTGTTATATTGTTCTCTTAAAA  350

seq1  GCAGGTTAAACACACAGGCTGAGAACACAGCAGGATATCAGGGTATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTAAACACACAGGCTGAGAACACAGCAGGATATCAGGGTATGTCT  400

seq1  TAAATGACCTCAAGGTGCATTATTAACTGAGCCTTGAGGTCCAGCAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACCTCAAGGTGCATTATTAACTGAGCCTTGAGGTCCAGCAAAAG  450

seq1  TTCTAGTCTCTTGGAAAGAAAAATACTTTCATAAAATTGTATCACTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCTCTTGGAAAGAAAAATACTTTCATAAAATTGTATCACTACTG  500

seq1  TCCCTTTATTA-TTTTCAGAAGTTCTCTTATTAACTCCAAAGGAGAAAAT  549
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTATTATTTTTCAGAAGTTCTCTTATTAACTCCAAAGGAGAAAAT  550

seq1  ACAGACTGAGTTCCCATGTTGGTTTCTCGAAGAGGCCTCAATAAATGTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGAGTTCCCATGTTGGTTTCTCGAAGAGGCCTCAATAAATGTAG  600

seq1  TTCAGAAAACTAAACTTTTCATCTTTGTGTAAAATTGACATCACATCAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCAGAAAACTAAACTTTTCATCTTTGTGTAAAATTGACATCACATC-AA  649

seq1  ACCGGATAATGATATATTATGAAGGCCTACAGGAAGGTTCTAAGTACATA  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCGGATAATGATATATTATGAAGGCCTACAGGAAGGTTCT-AGTACATA  698

seq1  CAATATACTCTACTGTATTTTACCAAGATTCTTCCACCATTTTAGAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAATATACTCTACTGTATTTTACCAAGATTCTTCCACCATTTTAG-AAAA  747

seq1  TTAGTTTCTATCTAGACCACCTTTGAGAAGGCCATGAGAGTACATC-TGA  798
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAGTTTCTATCTAGACCACCTTTGAGAAGGCCATGAGAGTACATCTTGA  797

seq1  GCCAAAAATAGAATTTGCTACATGATA-GTAATTTTACATG--TGAGAAT  845
      ||||||| ||||||||||||||||||| |||||||||||||   ||||||
seq2  GCCAAAATTAGAATTTGCTACATGATAGGTAATTTTACATGGTGGAGAAT  847

seq1  AAACTAGAAAATAGTTCCCTTCTAAATTCTGTAGCATGGCCATGTT  891
       |   ||||||  |||||||  ||||||| ||||||||||||||||
seq2  TACTAAGAAAAATGTTCCCTCTTAAATTCCGTAGCATGGCCATGTT  893

seq1: chr2_100589877_100591000
seq2: B6Ng01-019M03.g_66_1167 (reverse)

seq1  TGGGAAAAGCCTTTTGAAGCTATAATTTTTACTTCCTTTCAAATTTATTA  50
      ||||||||||   ||| |||||||  ||||||||||||||||||||||  
seq2  TGGGAAAAGC---TTG-AGCTATA--TTTTACTTCCTTTCAAATTTAT--  42

seq1  CAAATCAAATGATCCAGGGGCTTCAGCTGAAACATGCTCCTACTCTATTC  100
      ||| || ||||||||||||   ||||||||||||||||||||||||||||
seq2  CAATTC-AATGATCCAGGG--CTCAGCTGAAACATGCTCCTACTCTATTC  89

seq1  CCAAACTAAAAATATGCTATCATTTTTCTCCTTTAAGAGAAGAAGAGAGA  150
      || |||| |||||||||||||||||||||||||||||||||| |||||||
seq2  CC-AACT-AAAATATGCTATCATTTTTCTCCTTTAAGAGAAG-AGAGAGA  136

seq1  GCTTTATAAATATACAAAAAAAAATATCCATGGTGCTCTTTTGTTTTTTT  200
      ||||||||||||||| |||||||||||||||||||||||||   ||||||
seq2  GCTTTATAAATATAC-AAAAAAAATATCCATGGTGCTCTTT--GTTTTTT  183

seq1  CTCACATTCCTTTTATGCAGAACCAATGTAAAGTTTAAAAAACAAAGTGA  250
      |||||||  | ||||||||||||||||||||||||||||||   ||||||
seq2  CTCACAT--CCTTTATGCAGAACCAATGTAAAGTTTAAAAA--CAAGTGA  229

seq1  GAGAAAACTCCCTGCACAGGCAGCGTGCCAAAGGAAGATTACTGCTTTCT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAG-AAACTCCCTGCACAGGCAGCGTGCCAAAGGAAGATTACTGCTTTCT  278

seq1  TTTTGTTTTCATCCTAAACAATGTTTTATTCAAACATAAATTTGAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCATCCTAAACAATGTTTTATTCAAACATAAATTTGAGGAAA  328

seq1  AGATGATTCTTTTGCTTATTTAATAATTAACACAAGTAACTAAATAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTCTTTTGCTTATTTAATAATTAACACAAGTAACTAAATAATTT  378

seq1  ATTAGTTCACAAATATTTCTTTCCTATGTGTTAGTGTACTGTTGTTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCACAAATATTTCTTTCCTATGTGTTAGTGTACTGTTGTTTGAA  428

seq1  TATAGTGAACAAAATACTGAAAAGGCAAGAAACAGAAACAAAAGCGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGAACAAAATACTGAAAAGGCAAGAAACAGAAACAAAAGCGGGTG  478

seq1  ATATATAGCAATTCACAATGTCCTTACTCTCTTTAAGACTCTGGTAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGCAATTCACAATGTCCTTACTCTCTTTAAGACTCTGGTAAGGT  528

seq1  TTGCCCAGTGGAAGATGAAAATGCATAAAATGCATGTCAATCAAATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGTGGAAGATGAAAATGCATAAAATGCATGTCAATCAAATAATA  578

seq1  TACTGGGTGATATCAAACTACATGTAGAACATATAAGGCATGGAAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGTGATATCAAACTACATGTAGAACATATAAGGCATGGAAAACAC  628

seq1  TCAGATCTGGGCTTCATAATCATGCTTCAATTAAATATTTCAGAATCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTGGGCTTCATAATCATGCTTCAATTAAATATTTCAGAATCTGC  678

seq1  AGACCACCTAGATAGAGAGGGAATGGAATAGGTTATGTATTGGAGAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACCTAGATAGAGAGGGAATGGAATAGGTTATGTATTGGAGAGATA  728

seq1  GATTATGACTGACTTTCAGAGAACAAAGCCTACTGTGTTGTCAAATATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGACTGACTTTCAGAGAACAAAGCCTACTGTGTTGTCAAATATTC  778

seq1  CCAGTCTCTGAAAATAAATGGCTTTTGAACAGAAACTTTGTTATGGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTGAAAATAAATGGCTTTTGAACAGAAACTTTGTTATGGACCA  828

seq1  TATTTATTATCTTGGGGAATTTGGATCATAGCCTCAAGCTTTAATCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATCTTGGGGAATTTGGATCATAGCCTCAAGCTTTAATCAAGA  878

seq1  TTTTGATATTCTTGTCTTCAAACATGCATTATATTTGCAGTTAGAGAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATATTCTTGTCTTCAAACATGCATTATATTTGCAGTTAGAGAATA  928

seq1  AGAGCTACACACTAGATAGCAAGATAAACATCCATTCTCTTTTACTCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTACACACTAGATAGCAAGATAAACATCCATTCTCTTTTACTCAAA  978

seq1  AGTTACCCTTACTTCTTAGAAAAATAATCCTAGGAGGTTGGTTTTGCTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCCTTACTTCTTAGAAAAATAATCCTAGGAGGTTGGTTTTGCTGG  1028

seq1  GATTGTGCAGTGTTTCTGTGAGCTCAGATTTATGGGCAGAATATGAGGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGCAGTGTTTCTGTGAGCTCAGATTTATGGGCAGAATATGAGGTA  1078

seq1  AGTGCATAAACTCATATAGAATTC  1124
      ||||||||||||||||||||||||
seq2  AGTGCATAAACTCATATAGAATTC  1102