BAC Information

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BAC

Clone NameB6Ng01-020B17
Chromosome2 (Build37)
Map Location 38,772,623 - 38,930,551
singlet/doubletdoublet
Overlap geneNr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1
Downstream geneLOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020B17.bB6Ng01-020B17.g
ACCDH852999DH853000
length1,090103
definitionDH852999|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B17, 5' end.DH853000|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,929,449 - 38,930,551)(38,772,623 - 38,772,725)
sequence
gaattctatggatgactattaaaaccctcttgtttaacagtttttcattt
tccacagattttaaatggtgcaattttttaatgtaatgacatagtgtgtt
acttggtttttatttttggatttaggaaacaccattttaaaagcaaactg
aaaaaagttcaaacttttagggtaacttttaaaatataatctttcaagtc
ttttaaattctcaatcttgaaatttttatttttttggtcttggcattaga
tacttacctccaacatctacccccacattcaaatagttactgttgtcacc
ttaagaagaacatatattgtttatttttccataatgaggacaatccataa
gttaaacttggacctggaagtgtctggatttgggaaatacctaattgttc
atagaggtgaaactggccacatgaaagtcaagagcagagcccttctgtgg
agttgcttttcacttcacactaatcggtaggacataagttactctctgat
gtacaaactgatgtcttgagatctctgaatttcattaaatgatgttaaat
ttttagaacctatttagaattgtttgcatctggaaattaaattttaaata
ggaactttaagatgacagatatttagaatatgagtactattatgatttgt
ttgcatatttacttttctttgtggtctatgaatgctaaaaatgcaaagga
aaatacttttaagtatttcagccaaaaatcaagtcattggtttcatagtt
ggatctctacacagattcttcgttggttggttttaaacagtgttgtaatg
gattccttggtatatccgctgcacagtttttttaatctttttttatattc
aagtttccaaggcatggatgttagagagactctgtgtgagttgaggataa
ctgggtgttaaagaagttatcgtgagttattttgctttaacaattggaga
tattaaactccctgtgtttgttattatatcatgcaccagttttgttattt
taaataagactcaatatgtaatataaacgttttgtacatcctccctccac
ctcctggtaatcccaaaggtctagctgtgaagttcttcct
agagaacaaagttacactggcaggatctttattgagtcacactccaatcc
agtgattctcaacttgtaggtcgaagtcctgtcacgggggttgggggtgg
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38929449_38930551
seq2: B6Ng01-020B17.b_42_1131 (reverse)

seq1  AGGAAGAACCTTCACAGCTAGGACCTTTGAGATTACCAAGGAGATGGAGG  50
      |||||||| ||||||||||| |||||||| ||||||| ||||| ||||||
seq2  AGGAAGAA-CTTCACAGCTA-GACCTTTGGGATTACC-AGGAGGTGGAGG  47

seq1  GAAGGATGTACAAAACGTTTATATTACATATTGAGTCCTATTTAAAATAA  100
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  G-AGGATGTACAAAACGTTTATATTACATATTGAGTCTTATTTAAAATAA  96

seq1  CAAAACTTGTGCATGAATATAAAATAACAAAACACAGGGAGTTTTAATAT  150
      ||||||| |||||||   ||| |||||| |||||||||||| ||||||||
seq2  CAAAACTGGTGCATG---ATATAATAAC-AAACACAGGGAG-TTTAATAT  141

seq1  CTTCCAAATTGTTAAAGCAAAATTAACTCACGATTTACTTCCTTAACACC  200
      ||  | |||||||||||||||| |||||||||| | ||||| ||||||||
seq2  CT--CCAATTGTTAAAGCAAAA-TAACTCACGA-TAACTTCTTTAACACC  187

seq1  CAGTTATCCTCAACTCACACAGAGTCTCTCTAACATCCATGCCTTGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATCCTCAACTCACACAGAGTCTCTCTAACATCCATGCCTTGGAAA  237

seq1  CTTGAATATGAAAAAAGATTAGAAAAACTGTGCAGCGGATATACCAAGGA  300
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  CTTGAATATAAAAAAAGATTAAAAAAACTGTGCAGCGGATATACCAAGGA  287

seq1  ATCCATTACAACACTGTTTAAAACCAACCAACGAAGAATCTGTGTAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTACAACACTGTTTAAAACCAACCAACGAAGAATCTGTGTAGAGA  337

seq1  TCCAACTATGAAACCAATGACTTGATTTTTGGCTGAAATACTTAAAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTATGAAACCAATGACTTGATTTTTGGCTGAAATACTTAAAAGTA  387

seq1  TTTTCCTTTGCATTTTTAGCATTCATAGACCACAAAGAAAAGTAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTGCATTTTTAGCATTCATAGACCACAAAGAAAAGTAAATATG  437

seq1  CAAACAAATCATAATAGTACTCATATTCTAAATATCTGTCATCTTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATCATAATAGTACTCATATTCTAAATATCTGTCATCTTAAAGT  487

seq1  TCCTATTTAAAATTTAATTTCCAGATGCAAACAATTCTAAATAGGTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTAAAATTTAATTTCCAGATGCAAACAATTCTAAATAGGTTCTA  537

seq1  AAAATTTAACATCATTTAATGAAATTCAGAGATCTCAAGACATCAGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAACATCATTTAATGAAATTCAGAGATCTCAAGACATCAGTTTG  587

seq1  TACATCAGAGAGTAACTTATGTCCTACCGATTAGTGTGAAGTGAAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAGAGAGTAACTTATGTCCTACCGATTAGTGTGAAGTGAAAAGCA  637

seq1  ACTCCACAGAAGGGCTCTGCTCTTGACTTTCATGTGGCCAGTTTCACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACAGAAGGGCTCTGCTCTTGACTTTCATGTGGCCAGTTTCACCTC  687

seq1  TATGAACAATTAGGTATTTCCCAAATCCAGACACTTCCAGGTCCAAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACAATTAGGTATTTCCCAAATCCAGACACTTCCAGGTCCAAGTTT  737

seq1  AACTTATGGATTGTCCTCATTATGGAAAAATAAACAATATATGTTCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGGATTGTCCTCATTATGGAAAAATAAACAATATATGTTCTTCT  787

seq1  TAAGGTGACAACAGTAACTATTTGAATGTGGGGGTAGATGTTGGAGGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGACAACAGTAACTATTTGAATGTGGGGGTAGATGTTGGAGGTAA  837

seq1  GTATCTAATGCCAAGACCAAAAAAATAAAAATTTCAAGATTGAGAATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAATGCCAAGACCAAAAAAATAAAAATTTCAAGATTGAGAATTTA  887

seq1  AAAGACTTGAAAGATTATATTTTAAAAGTTACCCTAAAAGTTTGAACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTGAAAGATTATATTTTAAAAGTTACCCTAAAAGTTTGAACTTT  937

seq1  TTTCAGTTTGCTTTTAAAATGGTGTTTCCTAAATCCAAAAATAAAAACCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTGCTTTTAAAATGGTGTTTCCTAAATCCAAAAATAAAAACCA  987

seq1  AGTAACACACTATGTCATTACATTAAAAAATTGCACCATTTAAAATCTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACACTATGTCATTACATTAAAAAATTGCACCATTTAAAATCTGT  1037

seq1  GGAAAATGAAAAACTGTTAAACAAGAGGGTTTTAATAGTCATCCATAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGAAAAACTGTTAAACAAGAGGGTTTTAATAGTCATCCATAGAA  1087

seq1  TTC  1103
      |||
seq2  TTC  1090

seq1: chr2_38772623_38772725
seq2: B6Ng01-020B17.g_70_172

seq1  AGAGAACAAAGTTACACTGGCAGGATCTTTATTGAGTCACACTCCAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAAGTTACACTGGCAGGATCTTTATTGAGTCACACTCCAATCC  50

seq1  AGTGATTCTCAACTTGTAGGTCGAAGTCCTGTCACGGGGGTTGGGGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCTCAACTTGTAGGTCGAAGTCCTGTCACGGGGGTTGGGGGTGG  100

seq1  GGG  103
      |||
seq2  GGG  103