BAC Information

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BAC

Clone NameB6Ng01-020F05
Chromosome2 (Build37)
Map Location 109,574,989 - 109,688,564
singlet/doubletdoublet
Overlap geneLOC100043427
Upstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf
Downstream geneLin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020F05.bB6Ng01-020F05.g
ACCDH853157DH853158
length1,069330
definitionDH853157|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F05, 5' end.DH853158|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,574,989 - 109,576,069)(109,688,235 - 109,688,564)
sequence
gaattctaatggttgatcattagccaagcaggaccccaggtctagagtca
gctaagcataagtgcgtgcataaccacagcgacaagagacaggcactcta
gacgctaggagcaacctctggagtcatgacgggacactggagagtccagg
ttaaccctgtagtattgggccaaggtctatcaactcctgcaggagccctg
aacaggaacaatataggcacaaaggctgcaaggagtctgagtctgcaggt
gagggtccttggcctagcagtgtagagaatgaagctacaggagttcctca
cagccaggtcatcagctgctctcagccagtaacacaccccagtgtcgttt
cactactgcctggcttactctgttggcctccaaaaggctttaaatggttc
aactggaagaacaaaaacaatctatcatgactatttggaggattttccct
attttcaaaagtgaccattaaaatactctttgcctttgtcttctgctcct
tcagatatttttgtctgtccccctcccctaccgtaaactgccaaataggc
agtagtgattgacacttagaagaaagaataaaatctctgaatcctataac
cccttcctggagggctccttttagcagcaacgcaggacatgcctggctta
gccaggctaatcgaatttggcagatgtactgtgtcagcaggcaccagggt
gctaatgccccaggtcagctgcttgagagggtaagtgggcaaatgcctgg
cttcttccccatgttttcagaataggaatccgagtcccagtaatcatctc
gactgtgggaccagaggctattttgggccatctcttatccaatggaaagt
tagggcggtgtcatttgaaactgccaaggagcatctgatttcacccttat
ccgggacatgtcccagaggaaatgggagcaatgtcaagagatcaaaatgc
aggtgtcagaatttccctttgtttgtatttctgggctctttttcatctct
ctccatttcagcttttctttccatgctttggctaaggtgtcactacagct
cactggaatagcagcctcc
agttactatttccttgaaagtaagatgcttgtgtatatctgtaagcacaa
aaatatgcccagtggtcctaaggtctgaccacactgtaaaatcaactaca
gaacagcagcagcagcagcagtagtaggagcagcagcagcagcagcagta
ataggagcagcacatcctatgttttccttactccagaggacttaagttga
aactccagaagtattttattcagttgattctacaagaattgaagatttga
acacacacacacacacacacacacacacagagagagagagagagagagag
agagagagagggagagggagagggagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_109574989_109576069
seq2: B6Ng01-020F05.b_43_1111

seq1  GAATTCTAATGGTTGATCATTAGCCAAGCAGGACCCCAGGTCTAGAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGGTTGATCATTAGCCAAGCAGGACCCCAGGTCTAGAGTCA  50

seq1  GCTAAGCATAAGTGCGTGCATAACCACAGCGACAAGAGACAGGCACTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCATAAGTGCGTGCATAACCACAGCGACAAGAGACAGGCACTCTA  100

seq1  GACGCTAGGAGCAACCTCTGGAGTCATGACGGGACACTGGAGAGTCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTAGGAGCAACCTCTGGAGTCATGACGGGACACTGGAGAGTCCAGG  150

seq1  TTAACCCTGTAGTATTGGGCCAAGGTCTATCAACTCCTGCAGGAGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCTGTAGTATTGGGCCAAGGTCTATCAACTCCTGCAGGAGCCCTG  200

seq1  AACAGGAACAATATAGGCACAAAGGCTGCAAGGAGTCTGAGTCTGCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAACAATATAGGCACAAAGGCTGCAAGGAGTCTGAGTCTGCAGGT  250

seq1  GAGGGTCCTTGGCCTAGCAGTGTAGAGAATGAAGCTACAGGAGTTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCCTTGGCCTAGCAGTGTAGAGAATGAAGCTACAGGAGTTCCTCA  300

seq1  CAGCCAGGTCATCAGCTGCTCTCAGCCAGTAACACACCCCAGTGTCGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGTCATCAGCTGCTCTCAGCCAGTAACACACCCCAGTGTCGTTT  350

seq1  CACTACTGCCTGGCTTACTCTGTTGGCCTCCAAAAGGCTTTAAATGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTGCCTGGCTTACTCTGTTGGCCTCCAAAAGGCTTTAAATGGTTC  400

seq1  AACTGGAAGAACAAAAACAATCTATCATGACTATTTGGAGGATTTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAGAACAAAAACAATCTATCATGACTATTTGGAGGATTTTCCCT  450

seq1  ATTTTCAAAAGTGACCATTAAAATACTCTTTGCCTTTGTCTTCTGCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAAGTGACCATTAAAATACTCTTTGCCTTTGTCTTCTGCTCCT  500

seq1  TCAGATATTTTTGTCTGTCCCCCTCCCCTACCGTAAACTGCCAAATAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATTTTTGTCTGTCCCCCTCCCCTACCGTAAACTGCCAAATAGGC  550

seq1  AGTAGTGATTGACACTTAGAAGAAAGAATAAAATCTCTGAATCCTATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGATTGACACTTAGAAGAAAGAATAAAATCTCTGAATCCTATAAC  600

seq1  CCCTTCCTGGAGGGCTCCTTTTAGCAGCAACGCAGGACATGCCTGGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTGGAGGGCTCCTTTTAGCAGCAACGCAGGACATGCCTGGCTTA  650

seq1  GCCAGGCTAATCGAATTTGGCAGATGTACTGTGTCAGCAGGCACCAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTAATCGAATTTGGCAGATGTACTGTGTCAGCAGGCACCAGGGT  700

seq1  GCTAATGCCCCAGGTCAGCTGCTTGAGAGGGTAAGTGGGCAAATGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGCCCCAGGTCAGCTGCTTGAGAGGGTAAGTGGGCAAATGCCTGG  750

seq1  CTTCTTCCCCATGTTTTCAGAATAGGAATCCGAGTCCCAGTAATCATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCCCATGTTTTCAGAATAGGAATCCGAGTCCCAGTAATCATCTC  800

seq1  GACTGTGGGACCAGAGGCTATTTTGGGCCATCTCTTATCCAATGGAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGGACCAGAGGCTATTTTGGGCCATCTCTTATCCAATGGAAAGT  850

seq1  TAGGGGCGGTGTCATTTGAAACTGCCAAGGAGCATCTGATTTCACCCTTA  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-GGGCGGTGTCATTTGAAACTGCCAAGGAGCATCTGATTTCACCCTTA  899

seq1  TCCGGGACATGTCCCCAGAGGAAATGGGAGCAATGTCAAGGAGATCAAAA  950
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  TCCGGGACATGT-CCCAGAGGAAATGGGAGCAATGTCAA-GAGATCAAAA  947

seq1  TGCAGGTGTCAGAATTTCCCTTTGTTTGTATTTCTGGGCTCTTTTTCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGTCAGAATTTCCCTTTGTTTGTATTTCTGGGCTCTTTTTCATC  997

seq1  TCTTCCTTCCATTTTCAGCTTTTCTTTCCATTGCTTTGGCTAAGGTGTTC  1050
      |||    |||| |||||||||||||||||| |||||||||||||||| ||
seq2  TCT---CTCCA-TTTCAGCTTTTCTTTCCA-TGCTTTGGCTAAGGTG-TC  1041

seq1  ACTACAGCTCACCTGGAATATAGCAGCCTCC  1081
      ||||||||||| |||||  ||||||||||||
seq2  ACTACAGCTCA-CTGGA--ATAGCAGCCTCC  1069

seq1: chr2_109688235_109688564
seq2: B6Ng01-020F05.g_72_401 (reverse)

seq1  CCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCAAATCTTCAATTCTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCAAATCTTCAATTCTTGTA  100

seq1  GAATCAACTGAATAAAATACTTCTGGAGTTTCAACTTAAGTCCTCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAACTGAATAAAATACTTCTGGAGTTTCAACTTAAGTCCTCTGGAG  150

seq1  TAAGGAAAACATAGGATGTGCTGCTCCTATTACTGCTGCTGCTGCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAACATAGGATGTGCTGCTCCTATTACTGCTGCTGCTGCTGCTG  200

seq1  CTCCTACTACTGCTGCTGCTGCTGCTGTTCTGTAGTTGATTTTACAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTACTGCTGCTGCTGCTGCTGTTCTGTAGTTGATTTTACAGTGT  250

seq1  GGTCAGACCTTAGGACCACTGGGCATATTTTTGTGCTTACAGATATACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGACCTTAGGACCACTGGGCATATTTTTGTGCTTACAGATATACAC  300

seq1  AAGCATCTTACTTTCAAGGAAATAGTAACT  330
      ||||||||||||||||||||||||||||||
seq2  AAGCATCTTACTTTCAAGGAAATAGTAACT  330