BAC Information

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BAC

Clone NameB6Ng01-020H04
Chromosome2 (Build37)
Map Location 140,484,614 - 140,627,056
singlet/doubletdoublet
Overlap geneFlrt3
Upstream geneLOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020H04.bB6Ng01-020H04.g
ACCDH853244DH853245
length1,1191,082
definitionDH853244|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H04, 5' end.DH853245|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,625,914 - 140,627,056)(140,484,614 - 140,485,714)
sequence
gaattctttaattcacatacagtaagaaagttattaaaattgtatttgac
tgtttttcatctagactccatagaaattaattatataagccagtgtttcc
caaagacagagacagaagataatttttacattgtacattgggaccattct
ttaatcaatagatcagtacttattttaaaatgccaaaagaaatacaacat
ttataaatgcataactgaaagagtgagtctctgagttcatggttactatt
atttaacaagaaggtaactttttttaaaagttattacaatgatttatatt
gtatgtgtttgatgcatgtgtgaaggactgagaaacacttgtagaaaatg
aatcctcccttctaccacatggggctcaggggttaaagtcaggccgccaa
cctggcaacaagcatttttatgcactgagcactctctccagttactaaga
aagtaacttcaatttctaaaaattaaaaatctaaagttaaaatttaaatc
actaggcttatattaaacaaaaatgttcattcattgtatatgaaatatta
aatactctgaataatttatagctataataaaaatcataatgtctcaaaaa
tgaatgaaggttagcagtgatgcactttgtttattggaaaccagacataa
cctagtccgtggaatttaatttgcagatgtgttcaactactacttctatc
ctttatgcattaaatattaattcttgctcttgccttcccaacaaagttgt
aagctggatttcacagggttgggttgaacatatcacacactatgcatatg
actttgcattcatctgtgacatacaaagatttgtggcagcatttctttct
ttaacccatcaaatcagcctttctgaattttatttcagtagttttctgga
taacctgcttatatgtttatataaattataacacataagataattataaa
tttctaaatctataaaaattaaatttataattataaatttataatcataa
tttgtaatataaacatatatataaaattaaattatagattatataaatta
taatttaaaaatttaaatgttgatcctcctccaaaactgtctgctggctc
caaaattcatgaaataaat
gaattcaactttttcaagagcctggatgatccaggcagaaaccaagatgc
agttctagtatatgtactggttacactacagaagtctaagttgtcatggt
ttttttttaagtacacatactccctgcacttacatgattcttctcacgaa
gtcctttattcttgaagctctgctgacggtggcttcgacagctgaagcct
tcacattgtccttatgccagctgatgtattcagttcagaaactatgctta
acttccttaaggatatttaatttgcctagggtaaaatgagaggtgcggca
agtttgatactgcccgttatgccacagattttgatttattgaataccact
gggataatacaaatttaaccattggaacattatttcataactagttttta
aaatttattttgtcatccagccaggtttcttttttttttttctttttaca
ttgtattaataccaaagtgaaaaacggcctgtgcttatactacaagggtc
tcatgtgaacgcagtcctgattgttcaacacagcgggaaaattcactttc
acagtcaacaagtcatcttactcagtagaacacaaagtaaatggtttata
acttcaatatctgcaaggaaaatacagtacaaattactaaaaaatactaa
aatatagaattgtgttcaggcatccccactacatcaaccgcagcagcaac
ctgaaatctgaaacttttaataaaaagttcttaaatataaattatatggc
aaatgtacagtacattgcttctctcagtctcttttccagtgttttgcagt
agaacagagttcctaccatcacctttcttagtttttaaaaaaaacccgga
acagtctggtgtgggacctccttgcatcatgagtgtgagtggtccgagtc
tgggatgccactgtctctgtagctcggtactactgctctcactgagttgt
tcttgtacagattcatccattcggaggaaatatggtgtgtattacaaact
cctcctgggatggtcattgctatcgtagcatctggaagagttccctgatt
caggatggaggttgctttctagtaccggcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_140625914_140627056
seq2: B6Ng01-020H04.b_43_1161 (reverse)

seq1  ATTTATTTTCATTGTATTTTTGGAGCACAGCAGACAGTTTTTTGAGAGGA  50
      ||||| ||||||   | ||||||||| ||||||||||||||    |||||
seq2  ATTTA-TTTCAT--GAATTTTGGAGC-CAGCAGACAGTTTTGGAGGAGGA  46

seq1  TCCAAACATTTTAAATTTTTATAAATTTATAATTTTATATTAAATCTATA  100
      ||  |||| |||||||||||   || |||||| |||||||  ||||||||
seq2  TC--AACA-TTTAAATTTTT---AAATTATAA-TTTATAT--AATCTATA  87

seq1  ATTTTAATTTTTATAATTATATGTTTATATTACAAATTATGATTATTAAA  150
      ||||  | |||||||  |||||||||||||||||||||||||||| ||||
seq2  ATTT--AATTTTATA--TATATGTTTATATTACAAATTATGATTA-TAAA  132

seq1  TTTATAATTTATAAATTTAATTTTTATAGATTTAGAAATTTTATAATTTA  200
      ||||||| |||||||||||||||||||||||||||||| ||||||| |||
seq2  TTTATAA-TTATAAATTTAATTTTTATAGATTTAGAAA-TTTATAA-TTA  179

seq1  TCTTATGTGTTATAATTTTATATTAAAACATATAAGCAGGTTATCCAGAA  250
      ||||||||||||||| |||||||  |||||||||||||||||||||||||
seq2  TCTTATGTGTTATAA-TTTATAT--AAACATATAAGCAGGTTATCCAGAA  226

seq1  AACTACTGAAATAAAATTCAGAAAGGCTGATTTGATGGGTTAAAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGAAATAAAATTCAGAAAGGCTGATTTGATGGGTTAAAGAAAGA  276

seq1  AATGCTGCCACAAATCTTTGTATGTCACAGATGAATGCAAAGTCATATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGCCACAAATCTTTGTATGTCACAGATGAATGCAAAGTCATATGC  326

seq1  ATAGTGTGTGATATGTTCAACCCAACCCTGTGAAATCCAGCTTACAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGTGATATGTTCAACCCAACCCTGTGAAATCCAGCTTACAACTT  376

seq1  TGTTGGGAAGGCAAGAGCAAGAATTAATATTTAATGCATAAAGGATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAAGGCAAGAGCAAGAATTAATATTTAATGCATAAAGGATAGAA  426

seq1  GTAGTAGTTGAACACATCTGCAAATTAAATTCCACGGACTAGGTTATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGTTGAACACATCTGCAAATTAAATTCCACGGACTAGGTTATGTC  476

seq1  TGGTTTCCAATAAACAAAGTGCATCACTGCTAACCTTCATTCATTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCAATAAACAAAGTGCATCACTGCTAACCTTCATTCATTTTTGA  526

seq1  GACATTATGATTTTTATTATAGCTATAAATTATTCAGAGTATTTAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATGATTTTTATTATAGCTATAAATTATTCAGAGTATTTAATATT  576

seq1  TCATATACAATGAATGAACATTTTTGTTTAATATAAGCCTAGTGATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACAATGAATGAACATTTTTGTTTAATATAAGCCTAGTGATTTAA  626

seq1  ATTTTAACTTTAGATTTTTAATTTTTAGAAATTGAAGTTACTTTCTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACTTTAGATTTTTAATTTTTAGAAATTGAAGTTACTTTCTTAGT  676

seq1  AACTGGAGAGAGTGCTCAGTGCATAAAAATGCTTGTTGCCAGGTTGGCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGAGAGTGCTCAGTGCATAAAAATGCTTGTTGCCAGGTTGGCGG  726

seq1  CCTGACTTTAACCCCTGAGCCCCATGTGGTAGAAGGGAGGATTCATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTTAACCCCTGAGCCCCATGTGGTAGAAGGGAGGATTCATTTTC  776

seq1  TACAAGTGTTTCTCAGTCCTTCACACATGCATCAAACACATACAATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGTTTCTCAGTCCTTCACACATGCATCAAACACATACAATATAA  826

seq1  ATCATTGTAATAACTTTTAAAAAAAGTTACCTTCTTGTTAAATAATAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTAATAACTTTTAAAAAAAGTTACCTTCTTGTTAAATAATAGTA  876

seq1  ACCATGAACTCAGAGACTCACTCTTTCAGTTATGCATTTATAAATGTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAACTCAGAGACTCACTCTTTCAGTTATGCATTTATAAATGTTGT  926

seq1  ATTTCTTTTGGCATTTTAAAATAAGTACTGATCTATTGATTAAAGAATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTGGCATTTTAAAATAAGTACTGATCTATTGATTAAAGAATGG  976

seq1  TCCCAATGTACAATGTAAAAATTATCTTCTGTCTCTGTCTTTGGGAAACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGTACAATGTAAAAATTATCTTCTGTCTCTGTCTTTGGGAAACA  1026

seq1  CTGGCTTATATAATTAATTTCTATGGAGTCTAGATGAAAAACAGTCAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTATATAATTAATTTCTATGGAGTCTAGATGAAAAACAGTCAAAT  1076

seq1  ACAATTTTAATAACTTTCTTACTGTATGTGAATTAAAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTAATAACTTTCTTACTGTATGTGAATTAAAGAATTC  1119

seq1: chr2_140484614_140485714
seq2: B6Ng01-020H04.g_64_1145

seq1  GAATTCAACTTTTTCAAGAGCCTGGATGATCCAGGCAGAAACCAAGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTTTCAAGAGCCTGGATGATCCAGGCAGAAACCAAGATGC  50

seq1  AGTTCTAGTATATGTACTGGTTACACTACAGAAGTCTAAGTTGTCATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGTATATGTACTGGTTACACTACAGAAGTCTAAGTTGTCATGGT  100

seq1  TTTTTTTTAAGTACACATACTCCCTGCACTTACATGATTCTTCTCACGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGTACACATACTCCCTGCACTTACATGATTCTTCTCACGAA  150

seq1  GTCCTTTATTCTTGAAGCTCTGCTGACGGTGGCTTCGACAGCTGAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTATTCTTGAAGCTCTGCTGACGGTGGCTTCGACAGCTGAAGCCT  200

seq1  TCACATTGTCCTTATGCCAGCTGATGTATTCAGTTCAGAAACTATGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTGTCCTTATGCCAGCTGATGTATTCAGTTCAGAAACTATGCTTA  250

seq1  ACTTCCTTAAGGATATTTAATTTGCCTAGGGTAAAATGAGAGGTGCGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTAAGGATATTTAATTTGCCTAGGGTAAAATGAGAGGTGCGGCA  300

seq1  AGTTTGATACTGCCCGTTATGCCACAGATTTTGATTTATTGAATACCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATACTGCCCGTTATGCCACAGATTTTGATTTATTGAATACCACT  350

seq1  GGGATAATACAAATTTAACCATTGGAACATTATTTCATAACTAGTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAATACAAATTTAACCATTGGAACATTATTTCATAACTAGTTTTTA  400

seq1  AAATTTATTTTGTCATCCAGCCAGGTTTCTTTTTTTTTTTTCTTTTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTTTGTCATCCAGCCAGGTTTCTTTTTTTTTTTTCTTTTTACA  450

seq1  TTGTATTAATACCAAAGTGAAAAACGGCCTGTGCTTATACTACAAGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAATACCAAAGTGAAAAACGGCCTGTGCTTATACTACAAGGGTC  500

seq1  TCATGTGAACGCAGTCCTGATTGTTCAACACAGCGGGAAAATTCACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAACGCAGTCCTGATTGTTCAACACAGCGGGAAAATTCACTTTC  550

seq1  ACAGTCAACAAGTCATCTTACTCAGTAGAACACAAAGTAAATGGTTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAACAAGTCATCTTACTCAGTAGAACACAAAGTAAATGGTTTATA  600

seq1  ACTTCAATATCTGCAAGGAAAATACAGTACAAATTACTAAAAAATACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATATCTGCAAGGAAAATACAGTACAAATTACTAAAAAATACTAA  650

seq1  AATATAGAATTGTGTTCAGGCATCCCCACTACATCAACCGCAGCAGCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAATTGTGTTCAGGCATCCCCACTACATCAACCGCAGCAGCAAC  700

seq1  CTGAAATCTGAAACTTTTAATAAAAAGTTCTTAAATATAAATTATATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCTGAAACTTTTAATAAAAAGTTCTTAAATATAAATTATATGGC  750

seq1  AAATGTACAGTACATTGCTTCTCTCAGTCTCTTTTCCAGTGTTTTGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACAGTACATTGCTTCTCTCAGTCTCTTTTCCAGTGTTTTGCAGT  800

seq1  AGAACAGAGTTCCTACCATCACCTTTCTTAGGTTTTTTAAAAAAAAACCC  850
      |||||||||||||||||||||||||||||||   |||| |||||||||||
seq2  AGAACAGAGTTCCTACCATCACCTTTCTTAG---TTTTTAAAAAAAACCC  847

seq1  GGAACAGTCTGGTGTGGGACCTCCTTGCATCATGAGTGTGAGTGGTCCGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTCTGGTGTGGGACCTCCTTGCATCATGAGTGTGAGTGGTCCGA  897

seq1  GTCTGGGATGCCACTGTCTCTGTAGCTCCGGTTACTACTGCTCTCACTGA  950
      ||||||||||||||||||||||||||||  | ||||||||||||||||||
seq2  GTCTGGGATGCCACTGTCTCTGTAGCTC--GGTACTACTGCTCTCACTGA  945

seq1  GGTTGTTCTTGTACAGATTCATCCCATTCGGAGGAAATATGGTGTGTATT  1000
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  -GTTGTTCTTGTACAGATTCAT-CCATTCGGAGGAAATATGGTGTGTATT  993

seq1  ACAAACTCCTCCTTGGAGATGGGTTCATTGCTTATCGGTAGCATCTGGAA  1050
      |||||||||||||  | |||||  ||||||| |||| ||||||||||| |
seq2  ACAAACTCCTCCT--GGGATGG--TCATTGC-TATC-GTAGCATCTGG-A  1036

seq1  AGAAGTTTCCCTGATTTCCAGGATGGAGTTGTCTTTCTTAGTACCGGCTT  1100
      |||   ||||||||||  |||||||||| |  ||||| ||||||||||||
seq2  AGA--GTTCCCTGATT--CAGGATGGAGGTTGCTTTC-TAGTACCGGCTT  1081

seq1  C  1101
      |
seq2  C  1082