BAC Information

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BAC

Clone NameB6Ng01-020I20
Chromosome2 (Build37)
Map Location 121,448,752 - 121,578,160
singlet/doubletdoublet
Overlap geneFrmd5
Upstream geneStard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020I20.bB6Ng01-020I20.g
ACCDH853319DH853320
length1,1591,003
definitionDH853319|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I20, 5' end.DH853320|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,448,752 - 121,449,921)(121,577,156 - 121,578,160)
sequence
gaattccaggccagtcaggtctacacaacgagactcaataaactgacaaa
cagaagctagtcattagtaacaggccaagttcaagcggagtcacaaagac
tccatataaatgttaccaagcacagtggttcagacttccacacaaaagcc
ttcacagaccttgcatttatttagtgcttgccccttcaactagacctcac
acaaggagagaaggtattacctaaatgccaactccagaccatgataatcc
ctctcagctcagcattctgcctggttttgtgctcaacgaccggaattctt
cttcaccattgctttgcatcaaatgcagagcgctgcttactggctttctc
ctcctggctgcttcccctgctttcttataccacccaggactactgcctat
aggtggcactgcccacagtgaactggtactcctatatcaatcaccaataa
agaaaacacaccacaggcttacccacaggtcaatccagtaggggcatttt
ctcaattgagcttcctttttctaaaacaactgtcttgtgtcaagatcaca
tgaaactagccacacagtatgaatttgcttattattggaacagctttatt
taactgtttggggaaaaataggagcataaataatctggtttacaggtcaa
ttaaaacgatctgattttatgggtttgtgccattttacagatgacataga
acttatagaaacattcattcctttatcctctcaacactctctgtcttagt
gtttttccgctgtgaccaaaggctaccctagggaggaaagggtttcattc
accttaaaagtgcagtccttcatgaagggaggtcaggcaggaacctggag
gcaggaacagaagcagaggccatggaggagtgctgcttaatagcttgctc
cctatggcttgcttggcctggttttttttatacaaccaggacacctgtcc
atgctcaaagtgagcagacctcccacttcatctctaagcaagaaaatggg
tcatgagttgcccatagtcatctggtggaaacatttttcgagttgagggt
tcctttcctcagatttggtgtcaggtggaataaagtagccagcacacctc
tacaaggtggagtcggctggcttgcctccattttccaatgttagacgata
gagactgct
gaattctcctgctggtcagggttgtttcaactgcaaaaggatgtgtgttg
gattcacactgtagctctgtagcacagggacctttcagcaatccctggca
atgtcttgtgactaggactcaatctccaggttggtggcgctctggaatgg
acctgttttacagaaagcacgaagtttaggccatacatgtttgtgcaccc
accggacaccctggagatcgtctaataattagcaatcgtctgcttctgca
gtaacctctgcctgtaggtgaagcaaacctaatttcagaaggggcaagtc
tcgtctggtatgggagttccatactccatccaaggcaagggggagcgagt
gaacgcaatgcagacataggatttccagtcctttaggctttaattcctgt
gaaatgatttataaaaacgtaagacagaaaaaaatcttggataaaattac
ctttcttataagttataattcctttacacttaaactgtgaagcacactta
taagatatgaaaaagacagcatatttctattttaggccacttttttttga
taaagagaaagaaatattcaacatcatttttttgacctatgggttccctt
cttgttgacttctaaaatatcagctggaggatttcgctgtctaatggctg
cccttcacatgatggagaatggagattggaccagaagtagcaattatttc
tttcaggaaagattagagaccaggtcttatcattctgcttcttcaaagga
ttaagagcaactctaaatgtttgggaattgaaatgaaatataactcctcg
ctgcccaatgtcattgagattcatagaggctgaaaggagccgtggatgcc
tttttgcaggacatctgtttggaatcttaaaagtgttgatccaattttat
ctgatttatagatattcatattcatattctctctctctctctcattccct
ccctccctccctcctccctccctggattccatgtggggggtggggggggg
gct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121448752_121449921
seq2: B6Ng01-020I20.b_45_1203

seq1  GAATTCCAGGCCAGTCAGGTCTACACAACGAGACTCAATAAACTGACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGTCAGGTCTACACAACGAGACTCAATAAACTGACAAA  50

seq1  CAGAAGCTAGTCATTAGTAACAGGCCAAGTTCAAGCGGAGTCACAAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTAGTCATTAGTAACAGGCCAAGTTCAAGCGGAGTCACAAAGAC  100

seq1  TCCATATAAATGTTACCAAGCACAGTGGTTCAGACTTCCACACAAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATAAATGTTACCAAGCACAGTGGTTCAGACTTCCACACAAAAGCC  150

seq1  TTCACAGACCTTGCATTTATTTAGTGCTTGCCCCTTCAACTAGACCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGACCTTGCATTTATTTAGTGCTTGCCCCTTCAACTAGACCTCAC  200

seq1  ACAAGGAGAGAAGGTATTACCTAAATGCCAACTCCAGACCATGATAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGAGAAGGTATTACCTAAATGCCAACTCCAGACCATGATAATCC  250

seq1  CTCTCAGCTCAGCATTCTGCCTGGTTTTGTGCTCAACGACCGGAATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCTCAGCATTCTGCCTGGTTTTGTGCTCAACGACCGGAATTCTT  300

seq1  CTTCACCATTGCTTTGCATCAAATGCAGAGCGCTGCTTACTGGCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCATTGCTTTGCATCAAATGCAGAGCGCTGCTTACTGGCTTTCTC  350

seq1  CTCCTGGCTGCTTCCCCTGCTTTCTTATACCACCCAGGACTACTGCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTGCTTCCCCTGCTTTCTTATACCACCCAGGACTACTGCCTAT  400

seq1  AGGTGGCACTGCCCACAGTGAACTGGTACTCCTATATCAATCACCAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCACTGCCCACAGTGAACTGGTACTCCTATATCAATCACCAATAA  450

seq1  AGAAAACACACCACAGGCTTACCCACAGGTCAATCCAGTAGGGGCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACACCACAGGCTTACCCACAGGTCAATCCAGTAGGGGCATTTT  500

seq1  CTCAATTGAGCTTCCTTTTTCTAAAACAACTGTCTTGTGTCAAGATCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTGAGCTTCCTTTTTCTAAAACAACTGTCTTGTGTCAAGATCACA  550

seq1  TGAAACTAGCCACACAGTATGAATTTGCTTATTATTGGAACAGCTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAGCCACACAGTATGAATTTGCTTATTATTGGAACAGCTTTATT  600

seq1  TAACTGTTTGGGGAAAAATAGGAGCATAAATAATCTGGTTTACAGGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTTGGGGAAAAATAGGAGCATAAATAATCTGGTTTACAGGTCAA  650

seq1  TTAAAACGATCTGATTTTATGGGTTTGTGCCATTTTACAGATGACATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACGATCTGATTTTATGGGTTTGTGCCATTTTACAGATGACATAGA  700

seq1  ACTTATAGAAACATTCATTCCTTTATCCTCTCAACACTCTCTGTCTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAGAAACATTCATTCCTTTATCCTCTCAACACTCTCTGTCTTAGT  750

seq1  GTTTTTCCGCTGTGACCAAAGGCTACCCTAGGGAGGAAAGGGTTTCATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCGCTGTGACCAAAGGCTACCCTAGGGAGGAAAGGGTTTCATTC  800

seq1  ACCTTAAAAGTGCAGTCCTTCATGAAGGGAGGTCAGGCAGGAACCTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAAAGTGCAGTCCTTCATGAAGGGAGGTCAGGCAGGAACCTGGAG  850

seq1  GCAGGAACAGAAGCAGAGGCCATGGAGGAGTGCTGCTTAATAGCTTGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACAGAAGCAGAGGCCATGGAGGAGTGCTGCTTAATAGCTTGCTC  900

seq1  CCTATGGCTTGCTTGGCCTGGTTTTTTTTATACAACCAGGACACCTGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCTTGCTTGGCCTGGTTTTTTTTATACAACCAGGACACCTGTCC  950

seq1  ATGCTCAAAGTGAGCAAGACCTTCCCACTTCAATCTCTAAGCAAGAAAAT  1000
      ||||||||||||||| ||||| ||||||||| ||||||||||||||||||
seq2  ATGCTCAAAGTGAGC-AGACC-TCCCACTTC-ATCTCTAAGCAAGAAAAT  997

seq1  GTGTCATGAGTTTGCCCATAGGTCAATCTGGTGGAAACATTTTCTCAGTT  1050
      | |||||||| ||||||||| ||| ||||||||||||||||||   ||||
seq2  GGGTCATGAG-TTGCCCATA-GTC-ATCTGGTGGAAACATTTTTCGAGTT  1044

seq1  GAGGGTTCCTTCTCTCAGATTT-GTGTCAAGTTGACATAAAGTTAGCCAG  1099
      |||||||||||  ||||||||| |||||| || || |||||| |||||||
seq2  GAGGGTTCCTTTCCTCAGATTTGGTGTCAGGTGGA-ATAAAG-TAGCCAG  1092

seq1  CACAC--CTACAAAGT-GAGTCAGCTGGGCTTTGCTTCCATTTTCCAAAT  1146
      |||||  |||||| || ||||| |||||   |||| |||||||||| |||
seq2  CACACCTCTACAAGGTGGAGTCGGCTGG--CTTGCCTCCATTTTCC-AAT  1139

seq1  GTTAAGACAGGATTAGAGACTGCT  1170
      ||| ||||  || |||||||||||
seq2  GTT-AGAC--GA-TAGAGACTGCT  1159

seq1: chr2_121577156_121578160
seq2: B6Ng01-020I20.g_68_1070 (reverse)

seq1  ACCCCCACCCCCA-CCCCCACATGGAATCAGGGGAGGGAGGGAGGGAGGG  49
      | |||| |||||| |||||||||||||||  |||||||| ||||||||||
seq2  AGCCCCCCCCCCACCCCCCACATGGAATCCAGGGAGGGA-GGAGGGAGGG  49

seq1  AGGGAGGGAATGAGAGAGAGAGAGAGAATATGAATATGAATATCTATTAA  99
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGGAGGGAATGAGAGAGAGAGAGAGAATATGAATATGAATATCTA-TAA  98

seq1  TTCAGAT-AAATTGGATCAACACCTTTTAAGATTCCAAACAGATGTCCTG  148
       |||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  ATCAGATAAAATTGGATCAACA-CTTTTAAGATTCCAAACAGATGTCCTG  147

seq1  CATAAAGGCATCCACGGCTCCTTTCAGCCTCTATGAATCTCAATGACATT  198
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGCATCCACGGCTCCTTTCAGCCTCTATGAATCTCAATGACATT  197

seq1  GGGCAGCGAGGAGTTATATTTCAATTTCAATTCCCAAACATTTAGAGTTG  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGCAGCGAGGAGTTATATTTC-ATTTCAATTCCCAAACATTTAGAGTTG  246

seq1  CTCTTAATCCTTTGAAGAAGCAGAATGATAAGACCTGGTCTCTAATCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATCCTTTGAAGAAGCAGAATGATAAGACCTGGTCTCTAATCTTT  296

seq1  CCTGAAAGAAATAATTGCTACTTCTGGTCCAATCTCCATTCTCCATCATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGAAATAATTGCTACTTCTGGTCCAATCTCCATTCTCCATCATG  346

seq1  TGAAGGGCAGCCATTAGACAGCGAAATCCTCCAGCTGATATTTTAGAAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGCAGCCATTAGACAGCGAAATCCTCCAGCTGATATTTTAGAAGT  396

seq1  CAACAAGAAGGGAACCCATAGGTCAAAAAAATGATGTTGAATATTTCTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAAGGGAACCCATAGGTCAAAAAAATGATGTTGAATATTTCTTT  446

seq1  CTCTTTATCAAAAAAAAGTGGCCTAAAATAGAAATATGCTGTCTTTTTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATCAAAAAAAAGTGGCCTAAAATAGAAATATGCTGTCTTTTTCA  496

seq1  TATCTTATAAGTGTGCTTCACAGTTTAAGTGTAAAGGAATTATAACTTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATAAGTGTGCTTCACAGTTTAAGTGTAAAGGAATTATAACTTAT  546

seq1  AAGAAAGGTAATTTTATCCAAGATTTTTTTCTGTCTTACGTTTTTATAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGTAATTTTATCCAAGATTTTTTTCTGTCTTACGTTTTTATAAA  596

seq1  TCATTTCACAGGAATTAAAGCCTAAAGGACTGGAAATCCTATGTCTGCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACAGGAATTAAAGCCTAAAGGACTGGAAATCCTATGTCTGCAT  646

seq1  TGCGTTCACTCGCTCCCCCTTGCCTTGGATGGAGTATGGAACTCCCATAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTCACTCGCTCCCCCTTGCCTTGGATGGAGTATGGAACTCCCATAC  696

seq1  CAGACGAGACTTGCCCCTTCTGAAATTAGGTTTGCTTCACCTACAGGCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGAGACTTGCCCCTTCTGAAATTAGGTTTGCTTCACCTACAGGCAG  746

seq1  AGGTTACTGCAGAAGCAGACGATTGCTAATTATTAGACGATCTCCAGGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTGCAGAAGCAGACGATTGCTAATTATTAGACGATCTCCAGGGT  796

seq1  GTCCGGTGGGTGCACAAACATGTATGGCCTAAACTTCGTGCTTTCTGTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGTGGGTGCACAAACATGTATGGCCTAAACTTCGTGCTTTCTGTAA  846

seq1  AACAGGTCCATTCCAGAGCGCCACCAACCTGGAGATTGAGTCCTAGTCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCCATTCCAGAGCGCCACCAACCTGGAGATTGAGTCCTAGTCAC  896

seq1  AAGACATTGCCAGGGATTGCTGAAAGGTCCCTGTGCTACAGAGCTACAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTGCCAGGGATTGCTGAAAGGTCCCTGTGCTACAGAGCTACAGT  946

seq1  GTGAATCCAACACACATCCTTTTGCAGTTGAAACAACCCTGACCAGCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCCAACACACATCCTTTTGCAGTTGAAACAACCCTGACCAGCAGG  996

seq1  AGAATTC  1005
      |||||||
seq2  AGAATTC  1003