BAC Information

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BAC

Clone NameB6Ng01-020N03
Chromosome2 (Build37)
Map Location 119,074,588 - 119,266,621
singlet/doubletdoublet
Overlap geneSpint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1
Upstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d
Downstream geneLOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N03.bB6Ng01-020N03.g
ACCDH853508DH853509
length807525
definitionDH853508|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N03, 5' end.DH853509|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,074,588 - 119,075,394)(119,266,091 - 119,266,621)
sequence
gaattccacagtcccctgcaccacccacctcccacaccagccagctccac
tgtttccaccacagaggacacagagcacctggtctataatcacacaaccc
agcctctctgagcctgggactcttgccagtcttaccaggtcctgcttgcc
aagacagaagctagaacctggaaaaacttggggaccagactcttcctacc
tctttcctgggcatacttactctgtctcagaagacagatctctgggcctc
tcgcaggagtctcagctgcactcaggccagttctggagaaggcccaagag
tctggaaggagcagagcagccttgagccaggagtactgtatatagaagga
cctgcttatccaagagctggagaaagttggtgttttgtgtcttgttcaaa
gctgcccatcaccatccgatgacgctaggaccttgagtggtatcagaggc
cagaagccacacactgccttccacatctgtccctccactctgcaacaggc
tgaaggatgtgtgtctctgcacacactgaaggatgtgtctttgtagtttg
tgctgtaaataattgcttttggggccccagggtcatagctcagtggtaga
gtgtgtgtggtcaccctgagctctctacaccgaaccacaagctacattaa
attacaaaataaagtgttgtgtttgttgagctcctcccacccccaccccc
caccctcttagtttccagtgctgatgtgaaacttgccatgtgcaaggcag
gtgctgtgccactgagctatctcctcagccctggtttgtggggttgctgg
ggggggg
ttgtcttttacttccttttaagaagtactgatatagtgtcaaggacttta
tggttgcaagaattagtagtggagccaggcgtggtggtgcacgtcttttg
tcccagcactcgggaggcagaggcaggcggatttctgagtttgaggccag
cctggtctacaaagtgagttccaggacagccagggctatacagaaaaacc
ctgtctcgaaaaaccaaaaaaaaaaaaaaaaaattggtagtggatttcca
tcacaacactactttttctagccatgtcatatagtcagccgacttatcct
ctttgaggtgagtctttaaatctctggtgcctagttgtctactttttcca
aatcagaggtaatatataccttacagcaataatttttctccccttctctt
cctcctcctcttcttcctcttctctctcttttttaaaaagatttatttat
ttatttatttattttatatatatgagtacactgtagctgtgcatatggtt
gtgagccatcatgtgatttctggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119074588_119075394
seq2: B6Ng01-020N03.b_44_850

seq1  GAATTCCACAGTCCCCTGCACCACCCACCTCCCACACCAGCCAGCTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTCCCCTGCACCACCCACCTCCCACACCAGCCAGCTCCAC  50

seq1  TGTTTCCACCACAGAGGACACAGAGCACCTGGTCTATAATCACACAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCACCACAGAGGACACAGAGCACCTGGTCTATAATCACACAACCC  100

seq1  AGCCTCTCTGAGCCTGGGACTCTTGCCAGTCTTACCAGGTCCTGCTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCTGAGCCTGGGACTCTTGCCAGTCTTACCAGGTCCTGCTTGCC  150

seq1  AAGACAGAAGCTAGAACCTGGAAAAACTTGGGGACCAGACTCTTCCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAAGCTAGAACCTGGAAAAACTTGGGGACCAGACTCTTCCTACC  200

seq1  TCTTTCCTGGGCATACTTACTCTGTCTCAGAAGACAGATCTCTGGGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGGGCATACTTACTCTGTCTCAGAAGACAGATCTCTGGGCCTC  250

seq1  TCGCAGGAGTCTCAGCTGCACTCAGGCCAGTTCTGGAGAAGGCCCAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGGAGTCTCAGCTGCACTCAGGCCAGTTCTGGAGAAGGCCCAAGAG  300

seq1  TCTGGAAGGAGCAGAGCAGCCTTGAGCCAGGAGTACTGTATATAGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGGAGCAGAGCAGCCTTGAGCCAGGAGTACTGTATATAGAAGGA  350

seq1  CCTGCTTATCCAAGAGCTGGAGAAAGTTGGTGTTTTGTGTCTTGTTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTATCCAAGAGCTGGAGAAAGTTGGTGTTTTGTGTCTTGTTCAAA  400

seq1  GCTGCCCATCACCATCCGATGACGCTAGGACCTTGAGTGGTATCAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCATCACCATCCGATGACGCTAGGACCTTGAGTGGTATCAGAGGC  450

seq1  CAGAAGCCACACACTGCCTTCCACATCTGTCCCTCCACTCTGCAACAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCACACACTGCCTTCCACATCTGTCCCTCCACTCTGCAACAGGC  500

seq1  TGAAGGATGTGTGTCTCTGCACACACTGAAGGATGTGTCTTTGTAGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATGTGTGTCTCTGCACACACTGAAGGATGTGTCTTTGTAGTTTG  550

seq1  TGCTGTAAATAATTGCTTTTGGGGCCCCAGGGTCATAGCTCAGTGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAAATAATTGCTTTTGGGGCCCCAGGGTCATAGCTCAGTGGTAGA  600

seq1  GTGTGTGTGGTCACCCTGAGCTCTCTACACCGAACCACAAGCTACATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGGTCACCCTGAGCTCTCTACACCGAACCACAAGCTACATTAA  650

seq1  ATTACAAAATAAAGTGTTGTGTTTGTTGAGCTCCTCCCACCCCCACCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAATAAAGTGTTGTGTTTGTTGAGCTCCTCCCACCCCCACCCCC  700

seq1  CACCCTCTTAGTTTCCAGTGCTGATGTGAAACTTGCCATGTGCAAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTTAGTTTCCAGTGCTGATGTGAAACTTGCCATGTGCAAGGCAG  750

seq1  GTGCTGTGCCACTGAGCTATCTCCTCAGCCCTGGTTTGTGGGGTTGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGCCACTGAGCTATCTCCTCAGCCCTGGTTTGTGGGGTTGCTGG  800

seq1  GGGGGGG  807
      |||||||
seq2  GGGGGGG  807

seq1: chr2_119266091_119266621
seq2: B6Ng01-020N03.g_66_596 (reverse)

seq1  TTCCAGAAATCACATGATGGCTCACAACCATCTGCACAGCTACAGTGTAC  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCCAGAAATCACATGATGGCTCACAACCATATGCACAGCTACAGTGTAC  50

seq1  TCATATATATAAAATAAATAAATAAATAAATAAATCTTTTTAAAAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATATAAAATAAATAAATAAATAAATAAATCTTTTTAAAAAAGAG  100

seq1  AGAGAAGAGGAAGAAGAGGAGGAGGAAGAGAAGGGGAGAAAAATTATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGGAAGAAGAGGAGGAGGAAGAGAAGGGGAGAAAAATTATTGC  150

seq1  TGTAAGGTATATATTACCTCTGATTTGGAAAAAGTAGACAACTAGGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGTATATATTACCTCTGATTTGGAAAAAGTAGACAACTAGGCACC  200

seq1  AGAGATTTAAAGACTCACCTCAAAGAGGATAAGTCGGCTGACTATATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTAAAGACTCACCTCAAAGAGGATAAGTCGGCTGACTATATGAC  250

seq1  ATGGCTAGAAAAAGTAGTGTTGTGATGGAAATCCACTACCAATTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGAAAAAGTAGTGTTGTGATGGAAATCCACTACCAATTTTTTTT  300

seq1  TTTTTTTTTTGGTTTTTCGAGACAGGGTTTTTCTGTATAGCCCTGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGTTTTTCGAGACAGGGTTTTTCTGTATAGCCCTGGCTGT  350

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCC  400

seq1  TGCCTCTGCCTCCCGAGTGCTGGGACAAAAGACGTGCACCACCACGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCGAGTGCTGGGACAAAAGACGTGCACCACCACGCCTG  450

seq1  GCTCCACTACTAATTCTTGCAACCATAAAGTCCTTGACACTATATCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACTACTAATTCTTGCAACCATAAAGTCCTTGACACTATATCAGTA  500

seq1  CTTCTTAAAAGGAAGTAAAAGACAAGAATTC  531
      |||||||||||||||||||||||||||||||
seq2  CTTCTTAAAAGGAAGTAAAAGACAAGAATTC  531