BAC Information

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BAC

Clone NameB6Ng01-020O14
Chromosome2 (Build37)
Map Location 123,491,000 - 123,642,572
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367, LOC100043369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020O14.bB6Ng01-020O14.g
ACCDH853575DH853576
length1,0901,029
definitionDH853575|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O14, 5' end.DH853576|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,641,477 - 123,642,572)(123,491,000 - 123,492,028)
sequence
gaattcttcccactgtcctatggaccttgttgccccctgtgctgcataat
attggcatctctgccacaggcaactttgattaattggcttcccatccagt
tataaattttggaacccaacactgcagcctcatggcctggaacagtaggt
gcccctttaatgattaccaagggccatttctctgtggaactctgattttc
aatggactaaggggctgtcaaggagcactatccatgatttctttttgttt
gtttgtttgtttgtttttgtttgtttgtttgtttttcgagagagggtttc
tctacatagccttggctgtcctgaaactcactctgtagaccagactggcc
tcgaactcagaaatctgcctgcctctgcctcccgagtgctgagattaaag
gtgtgtgccaccactgcccagctccatgttttcttattttaaaaattgaa
caattacattctgtctagattttgtgttttaaaaaattagagtagtgtgc
agctactggtttcaagtgagaagtgcagaaaaggaccagtctggaatgga
gcacaggagcttcagatagactcttctggagcctgctttcctacatccta
gtgtacatgtgctttgaaacaccagacacaaacctcaccatgttttcctt
tactctttccatctatgaaaacagcatcatcagtctagcggtcagcacaa
taaacctgcttcagattctgtctttatcaagtcgttataggatctggaga
gcaaagcagctttggaatacttcagtgttataacacttccattataatgc
aaaaacaacaagtaggaaaatgttgtgcccctggaagtattattgacatt
ttattcaaatgtaattttcataaagtaaaatctatgatttccaggcatat
tttttgggaattctcacagtcatctgttatagaagtgccattctagtctt
gatccaaatgccccacaagctttgcctttctcatgggctactttaccttc
tcagtccagccaatggcagccattttctgacttcttcatcaagttccttc
tacaggattcatgtaagctgggcaatggtgtgcacctgtg
gaattcatatactgactactgtacacttccagtagcataaaaaagggaga
ggaactggattgaaatcttgttctattgtatccaacattactgctttgtt
actttgaagagcaacatcaacagactatcatccaaataaattataattca
ttaactttagattactggtagatgtcatcttggcctttgacagtcacaaa
agaaaacctctatttttagttctgtgtatgtggggaagtgataaattatg
gaagtgaagcaatgtagtggctgaactcacgtgatcacataacacttcag
aaaacaaggaaatgtaacgtaatgagtacatgtgcatgatgaatagacaa
aggagtaaaatctgccagtcaaaaatatcaaggagtgctgaacttggcca
aggagagggagactaaagcagcttcagttcacttgagagaagtgaggttg
tagggatgcaggtctattcacccggatccagaacctgggttaatatttat
gttaaatgctaggaggaaggactgaagagaaggctaagtggtttaaaaca
cttgtcaatcttgcagaggagccactttgtttccatccacctacaggaca
gatcataaccatctgtaactccagttccaagggatctgatgtcctctttt
ggactccacgctcagcagatatgtacaaacacatatatatggcaagctct
catacagattttttcttaatttttaaaaaatgtctagaggataaatcaaa
tttctagtaaatcgaaattctattaagataaaatcaacatgcaatactgt
taaattccttcacacaaacaatggacagtggagacactgggattagaaag
acacctatttaaagctgcatcaaagatgatgataaaacagtatttgactt
gtatactgaaaactccccaacaatcctgaggagaagtaagactctaagta
actaaggaaacattctgtgtgtttgggtagaggtggtcattcctgataca
gtagcaatctgtgttcatttcttggtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123641477_123642572
seq2: B6Ng01-020O14.b_46_1135 (reverse)

seq1  CACAAGTGCACACATTTGCCCCAGCTTACATGAATCCTGTAGAAGGAAAC  50
      |||| ||||||||  ||| |||||||||||||||||||||||||||||  
seq2  CACAGGTGCACACCATTG-CCCAGCTTACATGAATCCTGTAGAAGGAA--  47

seq1  TTTGATGAAAGAAGTCAGGAAAATGGCTGCCATTGGCTGGACTGAGGAAG  100
       |||||| ||||||||| ||||||||||||||||||||||||||| ||||
seq2  CTTGATG-AAGAAGTCA-GAAAATGGCTGCCATTGGCTGGACTGA-GAAG  94

seq1  GTAAAGTAGCCCATGAGAAAGGCAAAGCTTGTGGGGCATTCTGGATCAAG  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTAAAGTAGCCCATGAGAAAGGCAAAGCTTGTGGGGCATT-TGGATCAAG  143

seq1  ACTAGAATGGCACTTCTATAACAGATGACTGTGAGAATTCCC-AAAAATA  199
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTAGAATGGCACTTCTATAACAGATGACTGTGAGAATTCCCAAAAAATA  193

seq1  TGCCTGGAAATCATAGATTTTACTTTATGAAAATTACATTTGAATAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAAATCATAGATTTTACTTTATGAAAATTACATTTGAATAAAAT  243

seq1  GTCAATAATACTTCCAGGGGCACAACATTTTCCTACTTGTTGTTTTTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAATACTTCCAGGGGCACAACATTTTCCTACTTGTTGTTTTTGCA  293

seq1  TTATAATGGAAGTGTTATAACACTGAAGTATTCCAAAGCTGCTTTGCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGGAAGTGTTATAACACTGAAGTATTCCAAAGCTGCTTTGCTCT  343

seq1  CCAGATCCTATAACGACTTGATAAAGACAGAATCTGAAGCAGGTTTATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCCTATAACGACTTGATAAAGACAGAATCTGAAGCAGGTTTATTG  393

seq1  TGCTGACCGCTAGACTGATGATGCTGTTTTCATAGATGGAAAGAGTAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCGCTAGACTGATGATGCTGTTTTCATAGATGGAAAGAGTAAAG  443

seq1  GAAAACATGGTGAGGTTTGTGTCTGGTGTTTCAAAGCACATGTACACTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATGGTGAGGTTTGTGTCTGGTGTTTCAAAGCACATGTACACTAG  493

seq1  GATGTAGGAAAGCAGGCTCCAGAAGAGTCTATCTGAAGCTCCTGTGCTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGGAAAGCAGGCTCCAGAAGAGTCTATCTGAAGCTCCTGTGCTCC  543

seq1  ATTCCAGACTGGTCCTTTTCTGCACTTCTCACTTGAAACCAGTAGCTGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGACTGGTCCTTTTCTGCACTTCTCACTTGAAACCAGTAGCTGCA  593

seq1  CACTACTCTAATTTTTTAAAACACAAAATCTAGACAGAATGTAATTGTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTCTAATTTTTTAAAACACAAAATCTAGACAGAATGTAATTGTTC  643

seq1  AATTTTTAAAATAAGAAAACATGGAGCTGGGCAGTGGTGGCACACACCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAAATAAGAAAACATGGAGCTGGGCAGTGGTGGCACACACCTT  693

seq1  TAATCTCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  743

seq1  CAGTCTGGTCTACAGAGTGAGTTTCAGGACAGCCAAGGCTATGTAGAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGTCTACAGAGTGAGTTTCAGGACAGCCAAGGCTATGTAGAGAA  793

seq1  ACCCTCTCTCGAAAAACAAACAAACAAACAAAAACAAACAAACAAACAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCTCGAAAAACAAACAAACAAACAAAAACAAACAAACAAACAAA  843

seq1  CAAAAAGAAATCATGGATAGTGCTCCTTGACAGCCCCTTAGTCCATTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAATCATGGATAGTGCTCCTTGACAGCCCCTTAGTCCATTGAA  893

seq1  AATCAGAGTTCCACAGAGAAATGGCCCTTGGTAATCATTAAAGGGGCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGTTCCACAGAGAAATGGCCCTTGGTAATCATTAAAGGGGCACC  943

seq1  TACTGTTCCAGGCCATGAGGCTGCAGTGTTGGGTTCCAAAATTTATAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCCAGGCCATGAGGCTGCAGTGTTGGGTTCCAAAATTTATAACT  993

seq1  GGATGGGAAGCCAATTAATCAAAGTTGCCTGTGGCAGAGATGCCAATATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAAGCCAATTAATCAAAGTTGCCTGTGGCAGAGATGCCAATATT  1043

seq1  ATGCAGCACAGGGGGCAACAAGGTCCATAGGACAGTGGGAAGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCACAGGGGGCAACAAGGTCCATAGGACAGTGGGAAGAATTC  1090

seq1: chr2_123491000_123492028
seq2: B6Ng01-020O14.g_69_1097

seq1  GAATTCATATACTGACTACTGTACACTTCCAGTAGCATAAAAAAGGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATACTGACTACTGTACACTTCCAGTAGCATAAAAAAGGGAGA  50

seq1  GGAACTGGATTGAAATCTTGTTCTATTGTATCCAACATTACTGCTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGATTGAAATCTTGTTCTATTGTATCCAACATTACTGCTTTGTT  100

seq1  ACTTTGAAGAGCAACATCAACAGACTATCATCCAAATAAATTATAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAGAGCAACATCAACAGACTATCATCCAAATAAATTATAATTCA  150

seq1  TTAACTTTAGATTACTGGTAGATGTCATCTTGGCCTTTGACAGTCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTAGATTACTGGTAGATGTCATCTTGGCCTTTGACAGTCACAAA  200

seq1  AGAAAACCTCTATTTTTAGTTCTGTGTATGTGGGGAAGTGATAAATTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTCTATTTTTAGTTCTGTGTATGTGGGGAAGTGATAAATTATG  250

seq1  GAAGTGAAGCAATGTAGTGGCTGAACTCACGTGATCACATAACACTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAGCAATGTAGTGGCTGAACTCACGTGATCACATAACACTTCAG  300

seq1  AAAACAAGGAAATGTAACGTAATGAGTACATGTGCATGATGAATAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGGAAATGTAACGTAATGAGTACATGTGCATGATGAATAGACAA  350

seq1  AGGAGTAAAATCTGCCAGTCAAAAATATCAAGGAGTGCTGAACTTGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAAAATCTGCCAGTCAAAAATATCAAGGAGTGCTGAACTTGGCCA  400

seq1  AGGAGAGGGAGACTAAAGCAGCTTCAGTTCACTTGAGAGAAGTGAGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGGAGACTAAAGCAGCTTCAGTTCACTTGAGAGAAGTGAGGTTG  450

seq1  TAGGGATGCAGGTCTATTCACCCGGATCCAGAACCTGGGTTAATATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATGCAGGTCTATTCACCCGGATCCAGAACCTGGGTTAATATTTAT  500

seq1  GTTAAATGCTAGGAGGAAGGACTGAAGAGAAGGCTAAGTGGTTTAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGCTAGGAGGAAGGACTGAAGAGAAGGCTAAGTGGTTTAAAACA  550

seq1  CTTGTCAATCTTGCAGAGGAGCCACTTTGTTTCCATCCACCTACAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAATCTTGCAGAGGAGCCACTTTGTTTCCATCCACCTACAGGACA  600

seq1  GATCATAACCATCTGTAACTCCAGTTCCAAGGGATCTGATGTCCTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAACCATCTGTAACTCCAGTTCCAAGGGATCTGATGTCCTCTTTT  650

seq1  GGACTCCACGCTCAGCAGATATGTACAAACACATATATATGGCAAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCACGCTCAGCAGATATGTACAAACACATATATATGGCAAGCTCT  700

seq1  CATACAGATTTTTTCTTAATTTTTAAAAAATGTCTAGAGGATAAATCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGATTTTTTCTTAATTTTTAAAAAATGTCTAGAGGATAAATCAAA  750

seq1  TTTCTAGTAAATCGAAATTCTATTAAGATAAAATCAACATGCAATACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTAAATCGAAATTCTATTAAGATAAAATCAACATGCAATACTGT  800

seq1  TAAATTCCTTCACACAAACAATGGACAGTGGAGACACT-GGATTAGAAAG  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAATTCCTTCACACAAACAATGGACAGTGGAGACACTGGGATTAGAAAG  850

seq1  ACACCTATTTAAAGCTGCATCAAAGATGATGATAAAAACAGTATTTGACT  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACACCTATTTAAAGCTGCATCAAAGATGATGAT-AAAACAGTATTTGACT  899

seq1  TGTATACTGAAAACTCCCCAACAACCCTGAGAGAAAGTAAGACTCTAAGT  949
      |||||||||||||||||||||||| ||||||   ||||||||||||||||
seq2  TGTATACTGAAAACTCCCCAACAATCCTGAGGAGAAGTAAGACTCTAAGT  949

seq1  AACTAAGGAAACATTCTGTGTGTTTGGGTAGAAGTTGTCATTCCTGATAC  999
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  AACTAAGGAAACATTCTGTGTGTTTGGGTAGAGGTGGTCATTCCTGATAC  999

seq1  AGTAGCAATCTGTGTTCCATTTCTT-GTGTT  1029
      |||||||||||||||| |||||||| |||||
seq2  AGTAGCAATCTGTGTT-CATTTCTTGGTGTT  1029