BAC Information

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BAC

Clone NameB6Ng01-021A13
Chromosome2 (Build37)
Map Location 162,840,455 - 163,020,205
singlet/doubletdoublet
Overlap geneIft52, Mybl2, 2410116G06Rik
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2
Downstream geneLOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021A13.bB6Ng01-021A13.g
ACCDH853659DH853660
length1,0031,089
definitionDH853659|Mus musculus domesticus DNA, BAC clone: B6Ng01-021A13, 5' end.DH853660|Mus musculus domesticus DNA, BAC clone: B6Ng01-021A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,840,455 - 162,841,414)(163,019,111 - 163,020,205)
sequence
gaattctcctcaaagatgggaatagtgcacatgccctgaaaaccagggag
gccgaagatgtgtggctctgggagttccagggcagcctggtctacaaagt
gagttccaggcagtcagggagatacaatgtgaccatatctcaaaaataaa
agtctcttagaataaagcaagaattgtctagaatgaaccagaaagtgatc
tagaagggtcttgacgagaccttccctcctgatctggacctggttatcaa
gttcatgtgctttaccgtaaggacagagctgatcttggaggccagtattc
tggctagctattaggctgtaggtgttcagaattcatcatttcagaaggta
atgctgactagccagacgtgggcatgtgatgcatgttcaagacactgccc
atgcgctgtagattattctgttttactttagtttctttcccacaaactcc
tggcacacacttcagggtagcctcattagctggctggtttggggacaatg
ggaggacttttctttgaatcagtgtatgctggtgatttttactgactttc
cctctatatttggtcccactcctttcctctcagttttgtcccctttgtcc
cttgccctaggaatgaagaggggaggcagggctcagggctgggacacatt
aaaaaccaaagagaacacctgcaacactgttctattggagatcaaagctc
agtcaagaattactattaagctttgatacggaaagaaactggttcttatc
tttcctagtgttggttaactgctagaggtgagacacaaggagaggacaaa
tcttccctcttacagagggtgactgtccgaaacctgaacatgctgccaga
gtccacaatcagctgttctaagattgtaaagtcacagaatgcttcaccaa
gatagaaaatgaacaagtatactatgaaactgactatatattttatttat
atatttactattattatatattattgaattcccattccaaatttgtatgt
ggg
gaattcttaacaaagttgcaaaaattaaatagctgcattttatagtaaga
ttccaacctgcctctttgtggttttgttgttgttttgctgagtaccagaa
ataacattccaaaaggcagtagatttcaacagctttgaaacagactgggt
tggtccaaaggcagtttcattttggactctgtgtggccccttgtttgggc
cttatattaaattaacaaaggcagggccatggtcaggatcctatggctga
catctggcacagtgcctggcccacatggagttccataaatctaagaatcc
cacaccctgggttcctgtgacctccctgaaaagcagcagattagagttgg
cagaaaagcctgttatttgtggttttctgttctaaatccaagcttctctc
ctattgtggtaaaacccaggaacacatgtgaataggacaggatccccggt
gccgagagcaaggagcaagtggcacggctcagaatgaattcccagaaaag
tcactgttattcgtaaatgaatgaaacagataagaaatcaggtctcgagg
tgggctttgtgcgttacatgatttcttgaaaataaagacaagagggaccc
ttctgctctctgtcatggttttcattgtgtctgtgtgtgaatgtgtggag
agccaagggtaacttgccaaaagccaattctcccctctaaccgtacaggt
gctggggactgaaatcaggtcactgggcttggtggcaagtacctttaccc
actgagctggctggctggtctgagggaccctttcttatagtaaagaggac
taatcattgtacactggggacctggaggatcttggaaggaggcatccctc
atgtaccccagttttgcttggcttcctgtctcacactgtacgcttactct
ataccttcttccctccgcaccacacccccagttccttcaagtcccacaca
ctcactgctgctctcaatccttaccttctgattgacaacctgcttccttc
tccttccactaatctaagcctttccttccaataagaagcccaagaatgga
tgagagagttctcaatggcttctctctctttggtgccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162840455_162841414
seq2: B6Ng01-021A13.b_39_1009

seq1  GAATTCTCCTCAAAGATGGGAATAGTGCACATGCCCTGAAAACCAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCAAAGATGGGAATAGTGCACATGCCCTGAAAACCAGGGAG  50

seq1  GCCGAAGATGTGTGGCTCTGGGAGTTCCAGGGCAGCCTGGTCTACAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAGATGTGTGGCTCTGGGAGTTCCAGGGCAGCCTGGTCTACAAAGT  100

seq1  GAGTTCCAGGCAGTCAGGGAGATACAATGTGACCATATCTCAAAAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGCAGTCAGGGAGATACAATGTGACCATATCTCAAAAATAAA  150

seq1  AGTCTCTTAGAATAAAGCAAGAATTGTCTAGAATGAACCAGAAAGTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTAGAATAAAGCAAGAATTGTCTAGAATGAACCAGAAAGTGATC  200

seq1  TAGAAGGGTCTTGACGAGACCTTCCCTCCTGATCTGGACCTGGTTATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGGTCTTGACGAGACCTTCCCTCCTGATCTGGACCTGGTTATCAA  250

seq1  GTTCATGTGCTTTACCGTAAGGACAGAGCTGATCTTGGAGGCCAGTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTGCTTTACCGTAAGGACAGAGCTGATCTTGGAGGCCAGTATTC  300

seq1  TGGCTAGCTATTAGGCTGTAGGTGTTCAGAATTCATCATTTCAGAAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCTATTAGGCTGTAGGTGTTCAGAATTCATCATTTCAGAAGGTA  350

seq1  ATGCTGACTAGCCAGACGTGGGCATGTGATGCATGTTCAAGACACTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGACTAGCCAGACGTGGGCATGTGATGCATGTTCAAGACACTGCCC  400

seq1  ATGCGCTGTAGATTATTCTGTTTTACTTTAGTTTCTTTCCCACAAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCTGTAGATTATTCTGTTTTACTTTAGTTTCTTTCCCACAAACTCC  450

seq1  TGGCACACACTTCAGGGTAGCCTCATTAGCTGGCTGGTTTGGGGACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACACTTCAGGGTAGCCTCATTAGCTGGCTGGTTTGGGGACAATG  500

seq1  GGAGGACTTTTCTTTGAATCAGTGTATGCTGGTGATTTTTACTGACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACTTTTCTTTGAATCAGTGTATGCTGGTGATTTTTACTGACTTTC  550

seq1  CCTCTATATTTGGTCCCACTCCTTTCCTCTCAGTTTTGTCCCCTTTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATATTTGGTCCCACTCCTTTCCTCTCAGTTTTGTCCCCTTTGTCC  600

seq1  CTTGCCCTAGGAATGAAGAGGGGAGGCAGGGCTCAGGGCTGGGACACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTAGGAATGAAGAGGGGAGGCAGGGCTCAGGGCTGGGACACATT  650

seq1  AAAAACCAAAGAGAACACCTGCAACACTGTTCTATTGGAGATCAAAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAGAGAACACCTGCAACACTGTTCTATTGGAGATCAAAGCTC  700

seq1  AGTCAAGAATTACTATTAAGCTTTGATACGGAAAGAAACTGGTTCTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAATTACTATTAAGCTTTGATACGGAAAGAAACTGGTTCTTATC  750

seq1  TTTCCTAGTGTGGGTTAACTGCTAGAGGTGAGACACAAGGAGAGGACAAA  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGTGTTGGTTAACTGCTAGAGGTGAGACACAAGGAGAGGACAAA  800

seq1  TCTTCCCTCTTACAGGAGGGTGACTGTCCGAAACCTGAACATGCTGCCAG  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCTTACA-GAGGGTGACTGTCCGAAACCTGAACATGCTGCCAG  849

seq1  AAGTCCACAATCAGCTGTTCTAAGATTGTAAAGTCACAGAATGCTTCACC  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGTCCACAATCAGCTGTTCTAAGATTGTAAAGTCACAGAATGCTTCACC  898

seq1  AAGATAGAAAATGAACAAGTATACTATGAAACTGAC-ATATA---TATAT  946
      |||||||||||||||||||||||||||||||||||| |||||   ||| |
seq2  AAGATAGAAAATGAACAAGTATACTATGAAACTGACTATATATTTTATTT  948

seq1  ATATAT---------ATATATAT  960
      ||||||          |||||||
seq2  ATATATTTACTATTATTATATAT  971

seq1: chr2_163019111_163020205
seq2: B6Ng01-021A13.g_65_1153 (reverse)

seq1  TGGGCACCAGAGAGA-AGAAGCCATTGGAGCACCTCTCTTCCATCCGTAC  49
      ||||||||| ||||| |||||||||| ||| | ||||||  ||||| | |
seq2  TGGGCACCAAAGAGAGAGAAGCCATT-GAG-AACTCTCT--CATCCATTC  46

seq1  TGGGGCTTCTGATTTGGAAGGAAGGGCTAGGATTAGTGGACAGGAGAAGG  99
      | |||||||| | |||||||||| ||||  |||||||||| |||||||||
seq2  TTGGGCTTCTTA-TTGGAAGGAAAGGCTTAGATTAGTGGA-AGGAGAAGG  94

seq1  AAGCAGGGTGTCCAATCAGAGGGT-AGGATTGAGAGCAGCAGTGAGTGTG  148
      ||||||| ||| |||||||| ||| |||||||||||||||||||||||||
seq2  AAGCAGGTTGT-CAATCAGAAGGTAAGGATTGAGAGCAGCAGTGAGTGTG  143

seq1  TGGGACCTGAAGGAACTGGGGGTGTGGGTGCGGGAGGGAAGAAGGTATAG  198
      |||||| |||||||||||||||||| ||||| ||||||||||||||||||
seq2  TGGGACTTGAAGGAACTGGGGGTGT-GGTGC-GGAGGGAAGAAGGTATAG  191

seq1  AGTAAGCGTACAGTGTGAGACAGGAAGCCAAGCAAAACTGGGGTACATGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCGTACAGTGTGAGACAGGAAGCCAAGCAAAACTGGGGTACATGA  241

seq1  GGGATGCCTCCTTCC-AGATCCTCCAGGTCCCCAGTGTACAATGATTAGT  297
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGATGCCTCCTTCCAAGATCCTCCAGGTCCCCAGTGTACAATGATTAGT  291

seq1  CCTCTTTACTATAAGAAAGGGTCCCTCAGACCAGCCAGCCAGCTCAGTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTACTATAAGAAAGGGTCCCTCAGACCAGCCAGCCAGCTCAGTGG  341

seq1  GTAAAGGTACTTGCCACCAAGCCCAGTGACCTGATTTCAGTCCCCAGCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTACTTGCCACCAAGCCCAGTGACCTGATTTCAGTCCCCAGCAC  391

seq1  CTGTACGGTTAGAGGGGAGAATTGGCTTTTGGCAAGTTACCCTTGGCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACGGTTAGAGGGGAGAATTGGCTTTTGGCAAGTTACCCTTGGCTCT  441

seq1  CCACACATTCACACACAGACACAATGAAAACCATGACAGAGAGCAGAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATTCACACACAGACACAATGAAAACCATGACAGAGAGCAGAAGG  491

seq1  GTCCCTCTTGTCTTTATTTTCAAGAAATCATGTAACGCACAAAGCCCACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTTGTCTTTATTTTCAAGAAATCATGTAACGCACAAAGCCCACC  541

seq1  TCGAGACCTGATTTCTTATCTGTTTCATTCATTTACGAATAACAGTGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACCTGATTTCTTATCTGTTTCATTCATTTACGAATAACAGTGACT  591

seq1  TTTCTGGGAATTCATTCTGAGCCGTGCCACTTGCTCCTTGCTCTCGGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGAATTCATTCTGAGCCGTGCCACTTGCTCCTTGCTCTCGGCAC  641

seq1  CGGGGATCCTGTCCTATTCACATGTGTTCCTGGGTTTTACCACAATAGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATCCTGTCCTATTCACATGTGTTCCTGGGTTTTACCACAATAGGA  691

seq1  GAGAAGCTTGGATTTAGAACAGAAAACCACAAATAACAGGCTTTTCTGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTTGGATTTAGAACAGAAAACCACAAATAACAGGCTTTTCTGCC  741

seq1  AACTCTAATCTGCTGCTTTTCAGGGAGGTCACAGGAACCCAGGGTGTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAATCTGCTGCTTTTCAGGGAGGTCACAGGAACCCAGGGTGTGGG  791

seq1  ATTCTTAGATTTATGGAACTCCATGTGGGCCAGGCACTGTGCCAGATGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGATTTATGGAACTCCATGTGGGCCAGGCACTGTGCCAGATGTC  841

seq1  AGCCATAGGATCCTGACCATGGCCCTGCCTTTGTTAATTTAATATAAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGGATCCTGACCATGGCCCTGCCTTTGTTAATTTAATATAAGGC  891

seq1  CCAAACAAGGGGCCACACAGAGTCCAAAATGAAACTGCCTTTGGACCAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAGGGGCCACACAGAGTCCAAAATGAAACTGCCTTTGGACCAAC  941

seq1  CCAGTCTGTTTCAAAGCTGTTGAAATCTACTGCCTTTTGGAATGTTATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGTTTCAAAGCTGTTGAAATCTACTGCCTTTTGGAATGTTATTT  991

seq1  CTGGTACTCAGCAAAACAACAACAAAACCACAAAGAGGCAGGTTGGAATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTCAGCAAAACAACAACAAAACCACAAAGAGGCAGGTTGGAATC  1041

seq1  TTACTATAAAATGCAGCTATTTAATTTTTGCAACTTTGTTAAGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATAAAATGCAGCTATTTAATTTTTGCAACTTTGTTAAGAATTC  1089