BAC Information

Click to search

BAC

Clone NameB6Ng01-021C02
Chromosome2 (Build37)
Map Location 158,259,395 - 158,387,053
singlet/doubletdoublet
Overlap geneB230339M05Rik, LOC628935, BC054059, LOC545481
Upstream geneSrc, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik
Downstream geneSlc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021C02.bB6Ng01-021C02.g
ACCDH853725DH853726
length592936
definitionDH853725|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C02, 5' end.DH853726|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,259,395 - 158,259,991)(158,386,117 - 158,387,053)
sequence
agttagcttttatggtacatcataaaatgtactatattctaaacatacat
actaaagtccgaacttcatgtaaagttgttataaattataccttagtttt
attgaaggatttacagtggtaccactttttttatttttatttttaaagtt
ttaaaaaattttttttttgttttttcgagatagggtttctctgtgtagcc
ctggctgtcctggaactcactttgtagaccaggctggccctcgaactcag
aagtccacctgcctctgcctcccaagtgctgggattaaaggcttgtgcca
ccatagtcactttttaaaaaaatagtaggaagctgggtgtggtggcatac
atttttaatcccagcattcaggaggaaggaataggcagatctctgagttt
gaggacagcctggtgaagattattgccagcctggtttcaaggtgagttcc
atgccagccagagctacatgttaagactgcctcaaaacagacatcaaaat
taaaaccatccaaccaaacaaaacaggaaagaaataatgtgtatgttact
ttaatgtttaataatgtaattatataggtataatagcaaaat
gaattcaaaacaaacctggactggaaggggagctgtgaggaggcccgggc
tgctgacaggctgttgaagggccagccagggctggaaacaagataggcag
aatgaggccatctcctggggctgcagagaggcttgtgtgcagcgctggcc
tcgctcctgcaaaggtcctccaggcccgaggaagagcagggctggggtga
gagacaggtcatactggagaagacgggacggggaccgcttgaagctgcca
gggccttgcattgtgggaagagcaagaactgacagacccagggtctggag
aactggaagcagcctgtctgagggacctggggattggatagtgggtggga
cctagggagatgtaacaatgcatgcctgagcatcagagtgagccagcgag
atccaacttcctgcagaaagccctgtgctgttggtgaacatgatccaccc
cggagcccagactccaggatctgcacacatcttcccaggagcaagacggt
tgaacctgcagaagtgggtatcctaacttctatttctttgtttctatcct
ggacaaggtgaaggtgactgagtcccttctctaaaatttggctcctccca
aaaatggtaaataaattactttttccatattcatatacatggtgtcattt
gctcttagtgtgggcaagtgttcagacccagagtcaggctgtgtggtagc
tagcaatacctgggttcaaatgcactcagagctgtgtgaccttgggccag
tcacttgacctctctgaacatcagtatctgtgtcttttccatgaatgtgt
cttgaggactaaagagactgtgtgccaggttgagcttgtgacaaagtgcc
ttcgctgtggggtgaaagcaggctgagtgtatgatcttcctttggctcga
ctcgagggaattaatggtacatggaagccatgactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_158259395_158259991
seq2: B6Ng01-021C02.b_47_644

seq1  GAATTCAGTTAGCTTTTATGGTACATCATAAAATGTACTATATTCTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGCTTTTATGGTACATCATAAAATGTACTATATTCTAAAC  50

seq1  ATACATACTAAAGTCCGAACTTCATGTAAAGTTGTTATAAATTATACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACTAAAGTCCGAACTTCATGTAAAGTTGTTATAAATTATACCTT  100

seq1  AGTTTTATTGAAGGATTTACAGTGGTACCACTTTTTTTATTTTTATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTGAAGGATTTACAGTGGTACCACTTTTTTTATTTTTATTTTT  150

seq1  AAAGTTTTAAAAAATTTTTTTTTTGTTTTTTCGAGATAGGGTTTCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTAAAAAATTTTTTTTTTGTTTTTTCGAGATAGGGTTTCTCTGT  200

seq1  GTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCCTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCCTCGA  250

seq1  ACTCAGAAGTCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAGTCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTT  300

seq1  GTGCCACCATAGTCACTTTTTAAAAAAATAGTAGGAAGCTGGGTGTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCATAGTCACTTTTTAAAAAAATAGTAGGAAGCTGGGTGTGGTG  350

seq1  GCATACATTTTTAATCCCAGCATTCAGGAGGAAGGAATAGGCAGATCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATTTTTAATCCCAGCATTCAGGAGGAAGGAATAGGCAGATCTCT  400

seq1  GAGTTTGAGGACAGCCTGGTGAAGATTATTGCCAGCCTGGTTTCAAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAGGACAGCCTGGTGAAGATTATTGCCAGCCTGGTTTCAAGGTG  450

seq1  AGTTCCATGCCAGCCAGAGCTACATGTTAAGACTGCCTCAAAACAGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATGCCAGCCAGAGCTACATGTTAAGACTGCCTCAAAACAGACAT  500

seq1  CAAAATTAAAACCATCCAACCAAACAAAACAGGAAAGAAATAATGTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAAAACCATCCAACCAAACAAAACAGGAAAGAAATAATGTGTAT  550

seq1  GTTACTTT-ATGTTTAATAATGTAATTATATAGGTATAATAGCAAAAT  597
      |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTAATGTTTAATAATGTAATTATATAGGTATAATAGCAAAAT  598

seq1: chr2_158386117_158387053
seq2: B6Ng01-021C02.g_67_1002 (reverse)

seq1  GAGTCATGGCTTCCATGTACCA-TATATCCCTCGAGTCTGAGCCAAAAGA  49
      |||||||||||||||||||||| ||  ||||||||||| ||||| |||| 
seq2  GAGTCATGGCTTCCATGTACCATTAATTCCCTCGAGTC-GAGCC-AAAGG  48

seq1  AAGATCTAACACTCAGCCTGCTTTCA-CCCACAGCGAAGGCACTTTGTCA  98
      ||||||  |||||||||||||||||| |||||||||||||||||||||||
seq2  AAGATCATACACTCAGCCTGCTTTCACCCCACAGCGAAGGCACTTTGTCA  98

seq1  CAAGCTCAACCTGGCACACAGTCTCTTTAGTCCTCAGGACACATTCATGG  148
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAGCTCAACCTGGCACACAGTCTCTTTAGTCCTCAAGACACATTCATGG  148

seq1  AAAAGACACAGATAACTGATGTTCAGAGAGGTCAAGTGACTGGCCCAAGG  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACAGAT-ACTGATGTTCAGAGAGGTCAAGTGACTGGCCCAAGG  197

seq1  TCACACAGCTCTGAGTGCATTTGAACCCAGGTATTGCTAGCTACCACACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGCTCTGAGTGCATTTGAACCCAGGTATTGCTAGCTACCACACA  247

seq1  GCCTGACTCTGGGTCTGAACACTTGCCCACACTAAGAGCAAATGACACCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACTCTGGGTCTGAACACTTGCCCACACTAAGAGCAAATGACACCA  297

seq1  TGTATATGAATATGGAAAAAGTAATTTATTTACCATTTTTGGGAGGAGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGAATATGGAAAAAGTAATTTATTTACCATTTTTGGGAGGAGCC  347

seq1  AAATTTTAGAGAAGGGACTCAGTCACCTTCACCTTGTCCAGGATAGAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAGAGAAGGGACTCAGTCACCTTCACCTTGTCCAGGATAGAAAC  397

seq1  AAAGAAATAGAAGTTAGGATACCCACTTCTGCAGGTTCAACCGTCTTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAGAAGTTAGGATACCCACTTCTGCAGGTTCAACCGTCTTGCT  447

seq1  CCTGGGAAGATGTGTGCAGATCCTGGAGTCTGGGCTCCGGGGTGGATCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAGATGTGTGCAGATCCTGGAGTCTGGGCTCCGGGGTGGATCAT  497

seq1  GTTCACCAACAGCACAGGGCTTTCTGCAGGAAGTTGGATCTCGCTGGCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCAACAGCACAGGGCTTTCTGCAGGAAGTTGGATCTCGCTGGCTC  547

seq1  ACTCTGATGCTCAGGCATGCATTGTTACATCTCCCTAGGTCCCACCCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATGCTCAGGCATGCATTGTTACATCTCCCTAGGTCCCACCCACT  597

seq1  ATCCAATCCCCAGGTCCCTCAGACAGGCTGCTTCCAGTTCTCCAGACCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATCCCCAGGTCCCTCAGACAGGCTGCTTCCAGTTCTCCAGACCCT  647

seq1  GGGTCTGTCAGTTCTTGCTCTTCCCACAATGCAAGGCCCTGGCAGCTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTCAGTTCTTGCTCTTCCCACAATGCAAGGCCCTGGCAGCTTCA  697

seq1  AGCGGTCCCCGTCCCGTCTTCTCCAGTATGACCTGTCTCTCACCCCAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTCCCCGTCCCGTCTTCTCCAGTATGACCTGTCTCTCACCCCAGCC  747

seq1  CTGCTCTTCCTCGGGCCTGGAGGACCTTTGCAGGAGCGAGGCCAGCGCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCTCGGGCCTGGAGGACCTTTGCAGGAGCGAGGCCAGCGCTG  797

seq1  CACACAAGCCTCTCTGCAGCCCCAGGAGATGGCCTCATTCTGCCTATCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGCCTCTCTGCAGCCCCAGGAGATGGCCTCATTCTGCCTATCTT  847

seq1  GTTTCCAGCCCTGGCTGGCCCTTCAACAGCCTGTCAGCAGCCCGGGCCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGCCCTGGCTGGCCCTTCAACAGCCTGTCAGCAGCCCGGGCCTC  897

seq1  CTCACAGCTCCCCTTCCAGTCCAGGTTTGTTTTGAATTC  937
      |||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCTCCCCTTCCAGTCCAGGTTTGTTTTGAATTC  936