BAC Information

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BAC

Clone NameB6Ng01-021D09
Chromosome2 (Build37)
Map Location 114,269,713 - 114,463,442
singlet/doubletdoublet
Overlap geneAtpbd4
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021D09.bB6Ng01-021D09.g
ACCDH853779DH853780
length1,1391,028
definitionDH853779|Mus musculus domesticus DNA, BAC clone: B6Ng01-021D09, 5' end.DH853780|Mus musculus domesticus DNA, BAC clone: B6Ng01-021D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,462,274 - 114,463,442)(114,269,713 - 114,270,751)
sequence
gaattctgttactattttcaaggcatacggaaatgatgcgtcttccattt
aaatcagattcttgctggcagacagatggactttggtagggcacaaaggg
cagcaggtttccagaatctagtaggttccagatgtggacatgttgggagc
catgctgactagttcttcctttacttagttccctgcttttatggctgctc
tccccactgctctctcttttttttttcttcttccttcatcttcctttctt
tcttatatgtgtatttaaaatagtaaccattggtttgacagccttgagtt
tgccatctgacatctttataatttagatattcatgatttcctgaacttaa
tatcctgtatgtatgatgaatatagcaagttgaaaacatgaaatttctgt
aaaagtatttcatattttttatttcagtttttggaaaacatcatcatcta
tctaccccatcactgaaggcaaacccaagtcccactatcaaacttgaact
ttttcttagctctgccttttacctcagccactaccattagaactgtgcaa
cctatggctaatacttcagtgaactgcagatcttgccgtggctgcttgtc
cacacgtattattcagcattgccctagtgtgccgtccacatgtggcccac
ccagctcattcgtcgcagtgctctcagctacaccgcatacaagcttatgc
tacctactgtttagaagactgagcattagtccccgcagctccacttgtca
gatgctgtcattcccatacaaaccattctgacaaactacaagcagtagcc
acttacagttagattttaaaaaaaattcctgtgtttacaacctgttgggt
ttttgttattgtttttatattctttattttcctggaagtttaagttccta
aagatcttcatcctttgtgactcttctgtacttttcttcgtcctgtctct
catggcgactttatatttatttgtgtctccgagctgtactgtgatatttc
tttggctgtacttgctgttggacttagaccttaacgccatatgatgtctc
gctctttcatttttgttcgttaggctagaaagttgcaaccaagctaataa
gatgtgtgaagggtggatgagtcaaactactatattttt
gaattcctttgtgacagaaaaatgaaactcagtgactgttcaaggatgtc
ctactttgctatgaatgatgacccagaaacaaggggaaaggcacttcttc
ttcgaagcaagtcttaacagggaaaacgaagaatgtgcatagtaaatgcc
cagagtgttgggtaggaaaagagggtacaaaaagaaaatagaagcttact
gaactttccccatgtggtcatttgtcaactttgagtttttaaaaccaaga
tgatttaattctatgttactctctcactgtgtcttagtttcacttagtat
taaaggggacagcacaatcaccctgaattttctggcactctaacctctag
gttctactccctgagagtcccacacctcagccatccagctgtttgtttgt
tccaagtctgcctgactctacatttccccagtaagctgtcattgggtttt
tggtgcagccatattctgaaacatgttccagttcctgaatcgactcctaa
taatagcaatttattctatgcttcaggatatagatttgctgccccacgga
ctttcttctgtccctataacttctctcatccagtcttcccctgttcccat
gttccacctttaccctaccagacaagtcccaagaggtgacatgttattta
tttccttagtcatggctaagttctcaaagaatctgtgtgtcctattgcct
ctagatcagcagttctccacctgcagaccataaccttcttgggagtcaag
caacactttcacagggctaccatatcagatagcctatatggaagatactt
acattatgatcataatgtaaattacagtagcaaagttacagtatgaggta
gcgatgaaataactatggatggggatcaccacacccagaaactgtataag
ggttgcagcataagaaggctgagaccactgctctagaccttcttgatccc
acagtccattcacctcatttacgatcatgttactaagaaagtcttacaca
gttcgcttcacaatagcttctggtttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114462274_114463442
seq2: B6Ng01-021D09.b_46_1184 (reverse)

seq1  AAAAATAATTTGATAGT-TTTTGACTCATCTACCCTTTCAACAATCCTTT  49
      ||||||      |||||  ||||||||||| |||| ||||   |||  ||
seq2  AAAAAT------ATAGTAGTTTGACTCATCCACCC-TTCACACATC--TT  41

seq1  ATTAGCTTGTGTATGCCAAACCTTTCCTAGGCACTTAACGATACAAAAAT  99
      ||||||||| || |||  |||  || ||||   | |||||| ||||||||
seq2  ATTAGCTTG-GT-TGC--AAC--TTTCTAG---CCTAACGA-ACAAAAAT  81

seq1  GGAAGAGCGAGCACTACATATGGCGTTAAAGGTCCTGTAGTCCAACAGCA  149
      | ||||||||| ||  ||||||||||| ||||||    ||||||||||||
seq2  GAAAGAGCGAG-ACATCATATGGCGTT-AAGGTC--TAAGTCCAACAGCA  127

seq1  AGTACAGCCATAGAAATAATCACAGTAACAAGCTCGGAGACACAGATAAA  199
      |||||||||| |||||| |||||||||   |||||||||||||| |||||
seq2  AGTACAGCCAAAGAAAT-ATCACAGTA--CAGCTCGGAGACACAAATAAA  174

seq1  TATACAAGTCGCCATGAGAGACAAGGACGAAGGAAAAGTACAGAAGAGTT  249
      |||| ||||||||||||||||| |||||||| |||||||||||||||| |
seq2  TATA-AAGTCGCCATGAGAGAC-AGGACGAA-GAAAAGTACAGAAGAG-T  220

seq1  CACAAAGGATGAAGATCTTTAGGAACTTAAACTTCCAGGAAAATAAAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGATGAAGATCTTTAGGAACTTAAACTTCCAGGAAAATAAAGAA  270

seq1  TATTAAAAACAATAACAAAAACCCAACAGGTTGTAAACACAGGAATTTTT  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TAAAAACAATAACAAAAACCCAACAGGTTGTAAACACAGGAATTTTT  319

seq1  TTTAAAATCTAACTGTAAGTGGCTACTGCTTGTAGTTTGTCAGAATGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCTAACTGTAAGTGGCTACTGCTTGTAGTTTGTCAGAATGGTT  369

seq1  TGTATGGGAATGACAGCATCTGACAAGTGGAGCTGCGGGGACTAATGCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGAATGACAGCATCTGACAAGTGGAGCTGCGGGGACTAATGCTC  419

seq1  AGTCTTCTAAACAGTAGGTAGCATAAGCTTGTATGCGGTGTAGCTGAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTAAACAGTAGGTAGCATAAGCTTGTATGCGGTGTAGCTGAGAG  469

seq1  CACTGCGACGAATGAGCTGGGTGGGCCACATGTGGACGGCACACTAGGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCGACGAATGAGCTGGGTGGGCCACATGTGGACGGCACACTAGGGC  519

seq1  AATGCTGAATAATACGTGTGGACAAGCAGCCACGGCAAGATCTGCAGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAATAATACGTGTGGACAAGCAGCCACGGCAAGATCTGCAGTTC  569

seq1  ACTGAAGTATTAGCCATAGGTTGCACAGTTCTAATGGTAGTGGCTGAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTATTAGCCATAGGTTGCACAGTTCTAATGGTAGTGGCTGAGGT  619

seq1  AAAAGGCAGAGCTAAGAAAAAGTTCAAGTTTGATAGTGGGACTTGGGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAGAGCTAAGAAAAAGTTCAAGTTTGATAGTGGGACTTGGGTTT  669

seq1  GCCTTCAGTGATGGGGTAGATAGATGATGATGTTTTCCAAAAACTGAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGTGATGGGGTAGATAGATGATGATGTTTTCCAAAAACTGAAAT  719

seq1  AAAAAATATGAAATACTTTTACAGAAATTTCATGTTTTCAACTTGCTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATGAAATACTTTTACAGAAATTTCATGTTTTCAACTTGCTATA  769

seq1  TTCATCATACATACAGGATATTAAGTTCAGGAAATCATGAATATCTAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATACATACAGGATATTAAGTTCAGGAAATCATGAATATCTAAAT  819

seq1  TATAAAGATGTCAGATGGCAAACTCAAGGCTGTCAAACCAATGGTTACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGATGTCAGATGGCAAACTCAAGGCTGTCAAACCAATGGTTACTA  869

seq1  TTTTAAATACACATATAAGAAAGAAAGGAAGATGAAGGAAGAAGAAAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATACACATATAAGAAAGAAAGGAAGATGAAGGAAGAAGAAAAAA  919

seq1  AAAAGAGAGAGCAGTGGGGAGAGCAGCCATAAAAGCAGGGAACTAAGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGAGCAGTGGGGAGAGCAGCCATAAAAGCAGGGAACTAAGTAA  969

seq1  AGGAAGAACTAGTCAGCATGGCTCCCAACATGTCCACATCTGGAACCTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAACTAGTCAGCATGGCTCCCAACATGTCCACATCTGGAACCTAC  1019

seq1  TAGATTCTGGAAACCTGCTGCCCTTTGTGCCCTACCAAAGTCCATCTGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTGGAAACCTGCTGCCCTTTGTGCCCTACCAAAGTCCATCTGTC  1069

seq1  TGCCAGCAAGAATCTGATTTAAATGGAAGACGCATCATTTCCGTATGCCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAAGAATCTGATTTAAATGGAAGACGCATCATTTCCGTATGCCT  1119

seq1  TGAAAATAGTAACAGAATTC  1169
      ||||||||||||||||||||
seq2  TGAAAATAGTAACAGAATTC  1139

seq1: chr2_114269713_114270751
seq2: B6Ng01-021D09.g_68_1086

seq1  GAATTCCTTTGTGACAGAAAAATGAAACTCAGTGACTGTTCAAGGATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGTGACAGAAAAATGAAACTCAGTGACTGTTCAAGGATGTC  50

seq1  CTACTTTGCTATGAATGATGACCCAGAAACAAGGGGAAAGGCACTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGCTATGAATGATGACCCAGAAACAAGGGGAAAGGCACTTCTTC  100

seq1  TTCGAAGCAAGTCTTAACAGGGAAAACGAAGAATGTGCATAGTAAATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAGCAAGTCTTAACAGGGAAAACGAAGAATGTGCATAGTAAATGCC  150

seq1  CAGAGTGTTGGGTAGGAAAAGAGGGTACAAAAAGAAAATAGAAGCTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTTGGGTAGGAAAAGAGGGTACAAAAAGAAAATAGAAGCTTACT  200

seq1  GAACTTTCCCCATGTGGTCATTTGTCAACTTTGAGTTTTTAAAACCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCCCCATGTGGTCATTTGTCAACTTTGAGTTTTTAAAACCAAGA  250

seq1  TGATTTAATTCTATGTTACTCTCTCACTGTGTCTTAGTTTCACTTAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAATTCTATGTTACTCTCTCACTGTGTCTTAGTTTCACTTAGTAT  300

seq1  TAAAGGGGACAGCACAATCACCCTGAATTTTCTGGCACTCTAACCTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGACAGCACAATCACCCTGAATTTTCTGGCACTCTAACCTCTAG  350

seq1  GTTCTACTCCCTGAGAGTCCCACACCTCAGCCATCCAGCTGTTTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTCCCTGAGAGTCCCACACCTCAGCCATCCAGCTGTTTGTTTGT  400

seq1  TCCAAGTCTGCCTGACTCTACATTTCCCCAGTAAGCTGTCATTGGGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTCTGCCTGACTCTACATTTCCCCAGTAAGCTGTCATTGGGTTTT  450

seq1  TGGTGCAGCCATATTCTGAAACATGTTCCAGTTCCTGAATCGACTCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAGCCATATTCTGAAACATGTTCCAGTTCCTGAATCGACTCCTAA  500

seq1  TAATAGCAATTTATTCTATGCTTCAGGATATAGATTTGCTGCCCCACGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAATTTATTCTATGCTTCAGGATATAGATTTGCTGCCCCACGGA  550

seq1  CTTTCTTCTGTCCCTATAACTTCTCTCATCCAGTCTTCCCCTGTTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTGTCCCTATAACTTCTCTCATCCAGTCTTCCCCTGTTCCCAT  600

seq1  GTTCCACC-TTACCCTACCAGACAAGTCCCAAGAGGTGACATGTTATTTA  649
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCTTTACCCTACCAGACAAGTCCCAAGAGGTGACATGTTATTTA  650

seq1  TTTCCTTAGTCATGGCTAAGTTCTCAAAGAATCTGTGTGTCCTATTGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAGTCATGGCTAAGTTCTCAAAGAATCTGTGTGTCCTATTGCCT  700

seq1  CTAGATCAGCAGTTCTCCACCTGCAGACCATAACCTTCTTGGGAGTCAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCAGCAGTTCTCCACCTGCAGACCATAACCTTCTTGGGAGTCAAG  750

seq1  CAACACTTTCACAGGGCTACCATATCAGATAGCCTATATGGAAGATACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTTCACAGGGCTACCATATCAGATAGCCTATATGGAAGATACTT  800

seq1  ACATTATGATCATAATGTAAATTACAGTAGCAAAGTTACAGTAATGAGGT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACATTATGATCATAATGTAAATTACAGTAGCAAAGTTACAGT-ATGAGGT  849

seq1  AGCGATGAAAATAACTATGGATGGGGATCACCACAACCCAGAAAACTGTA  899
      ||||||| |||||||||||||||||||||||||| |||||| ||||||||
seq2  AGCGATG-AAATAACTATGGATGGGGATCACCAC-ACCCAG-AAACTGTA  896

seq1  TTAAAGGGTTGCAGCATTAGGAAGGCTGAGAACCACTGCTCTAGACGCTC  949
      |  ||||||||||||| || |||||||||| ||||||||||||||| || 
seq2  T--AAGGGTTGCAGCA-TAAGAAGGCTGAG-ACCACTGCTCTAGAC-CTT  941

seq1  CTTGATCCCACAGGTCCCATTTCACCTCAATTTACAGATCATTGTTACTA  999
      |||||||||||| ||||   |||||||| |||||| ||||| ||||||||
seq2  CTTGATCCCACA-GTCC--ATTCACCTC-ATTTAC-GATCA-TGTTACTA  985

seq1  AGAAAAGTCTTTACACAGTTTCTGCTTTCACAAATAGCTT  1039
      || |||||| ||||||||||   || ||||| ||||||||
seq2  AG-AAAGTC-TTACACAGTT--CGC-TTCAC-AATAGCTT  1019