BAC Information

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BAC

Clone NameB6Ng01-021F13
Chromosome2 (Build37)
Map Location 65,495,688 - 65,625,198
singlet/doubletdoublet
Overlap geneScn2a1
Upstream geneLOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a
Downstream geneA330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021F13.bB6Ng01-021F13.g
ACCDH853877DH853878
length885263
definitionDH853877|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F13, 5' end.DH853878|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,495,688 - 65,496,572)(65,624,937 - 65,625,198)
sequence
gaattctaaccacatttttaaaattagagtatatagaattcaaatttaat
gcagaagatgaattttggttttagctacccttcctcctttcattgctagg
ggcaaaacctgaactctaataacattaggtgaagggtggagaaaaaaaca
aattctcaagtgctttgctcttcaaaagattgttcttctcccaagaatct
gaatttattccagcaacagcctcatggagctagctgagaccaaagttaat
tgttaagctaggaaaaagcagaagaaataaaacataaacctgctaagcat
ggtagcctgggcctgtcaccttagcgtttgaggatctgaggcagaaggat
tgcaatgagttttaggtcaacctgtactacacagttgaattccaagccag
cttgtaaggcagagaactaaaggaaggtgcaggtgagggtacctgccaac
acatgaaatagataagacatcccggacactgtctacaccgttttcatacc
agaaagcaagcaaacaagttgtgtgtcagtacctgctttgtcgttagtag
atcttctgttgttgctaccatctattctgaaagctgcatcacggttaaaa
atagtatcccttctcccctctaagatgttgacagtgttaaggaaaggcaa
cactttgtctgtgtttccaatgtatgctatttctaggctaaatttggctg
ctggattccacatatctgcaaagccgatcctggaggctggcccaggcagc
catgcagttggaattttttccctgtagccctggacaaggctatcctgcat
cagtgtctttctatgcttaagtggagctggggatactgaacggcagtgat
attttctttatttcgttgctttgatgctggttctc
actttgtaggtcaggctggcctcgaactcactgagatctgcctgcctctg
tccctcgaatgctgggattaaagggggggggggtgaatcactacacttgg
ctcaaacttaatatctttatcatatagcaaacatcacacttggcagttga
aaaacgtgcttgattttcaactcttcattgagcatgtgttacatttgata
catgctgagttacaaatttatctctccatgtggttattgattaatattat
atttttctgaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_65495688_65496572
seq2: B6Ng01-021F13.b_44_928

seq1  GAATTCTAACCACATTTTTAAAATTAGAGTATATAGAATTCAAATTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCACATTTTTAAAATTAGAGTATATAGAATTCAAATTTAAT  50

seq1  GCAGAAGATGAATTTTGGTTTTAGCTACCCTTCCTCCTTTCATTGCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGATGAATTTTGGTTTTAGCTACCCTTCCTCCTTTCATTGCTAGG  100

seq1  GGCAAAACCTGAACTCTAATAACATTAGGTGAAGGGTGGAGAAAAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACCTGAACTCTAATAACATTAGGTGAAGGGTGGAGAAAAAAACA  150

seq1  AATTCTCAAGTGCTTTGCTCTTCAAAAGATTGTTCTTCTCCCAAGAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAAGTGCTTTGCTCTTCAAAAGATTGTTCTTCTCCCAAGAATCT  200

seq1  GAATTTATTCCAGCAACAGCCTCATGGAGCTAGCTGAGACCAAAGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTCCAGCAACAGCCTCATGGAGCTAGCTGAGACCAAAGTTAAT  250

seq1  TGTTAAGCTAGGAAAAAGCAGAAGAAATAAAACATAAACCTGCTAAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCTAGGAAAAAGCAGAAGAAATAAAACATAAACCTGCTAAGCAT  300

seq1  GGTAGCCTGGGCCTGTCACCTTAGCGTTTGAGGATCTGAGGCAGAAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCTGGGCCTGTCACCTTAGCGTTTGAGGATCTGAGGCAGAAGGAT  350

seq1  TGCAATGAGTTTTAGGTCAACCTGTACTACACAGTTGAATTCCAAGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAGTTTTAGGTCAACCTGTACTACACAGTTGAATTCCAAGCCAG  400

seq1  CTTGTAAGGCAGAGAACTAAAGGAAGGTGCAGGTGAGGGTACCTGCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGGCAGAGAACTAAAGGAAGGTGCAGGTGAGGGTACCTGCCAAC  450

seq1  ACATGAAATAGATAAGACATCCCGGACACTGTCTACACCGTTTTCATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAATAGATAAGACATCCCGGACACTGTCTACACCGTTTTCATACC  500

seq1  AGAAAGCAAGCAAACAAGTTGTGTGTCAGTACCTGCTTTGTCGTTAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAAGCAAACAAGTTGTGTGTCAGTACCTGCTTTGTCGTTAGTAG  550

seq1  ATCTTCTGTTGTTGCTACCATCTATTCTGAAAGCTGCATCACGGTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGTTGTTGCTACCATCTATTCTGAAAGCTGCATCACGGTTAAAA  600

seq1  ATAGTATCCCTTCTCCCCTCTAAGATGTTGACAGTGTTAAGGAAAGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATCCCTTCTCCCCTCTAAGATGTTGACAGTGTTAAGGAAAGGCAA  650

seq1  CACTTTGTCTGTGTTTCCAATGTATGCTATTTCTAGGCTAAATTTGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTCTGTGTTTCCAATGTATGCTATTTCTAGGCTAAATTTGGCTG  700

seq1  CTGGATTCCACATATCTGCAAAGCCGATCCTGGAGGCTGGCCCAGGCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTCCACATATCTGCAAAGCCGATCCTGGAGGCTGGCCCAGGCAGC  750

seq1  CATGCAGGTTGGAATTTTTTCCCTGTAGCCCTGGACAAGGCTATCCTGCA  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCA-GTTGGAATTTTTTCCCTGTAGCCCTGGACAAGGCTATCCTGCA  799

seq1  TCAGTGTC-TTCTATGCTTAAGTGGAAGCTGGGGATACTGAACGGCAGTG  849
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGTGTCTTTCTATGCTTAAGTGG-AGCTGGGGATACTGAACGGCAGTG  848

seq1  ATATTTTCTTTA-TTCG-TGCTTTGATTGCTGGTTCTC  885
      |||||||||||| |||| |||||||| |||||||||||
seq2  ATATTTTCTTTATTTCGTTGCTTTGA-TGCTGGTTCTC  885

seq1: chr2_65624937_65625198
seq2: B6Ng01-021F13.g_73_335 (reverse)

seq1  GATTCAG-GTAATATAATTTTAATCATTTCCCACTTGGAGAGATTACTTT  49
      |||||||   |||||||| ||||||| |  |||| ||||||||| | |||
seq2  GATTCAGAAAAATATAATATTAATCAATAACCACATGGAGAGATAAATTT  50

seq1  GTAACTCAGCATGTATCAAATGTAACACATGCTCAATGAAGAGTTGAAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCAGCATGTATCAAATGTAACACATGCTCAATGAAGAGTTGAAAA  100

seq1  TCAAGCACGTTTTTCAACTGCCAAGTGTGATGTTTGCTATATGATAAAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACGTTTTTCAACTGCCAAGTGTGATGTTTGCTATATGATAAAGA  150

seq1  TATTAAGTTTGAGCCAAGTGTAGTGATTCACCCCCCCCCCCTTTAATCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTTTGAGCCAAGTGTAGTGATTCACCCCCCCCCCCTTTAATCCC  200

seq1  AGCATTCGAGGGACAGAGGCAGGCAGATCTCAGTGAGTTCGAGGCCAGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCGAGGGACAGAGGCAGGCAGATCTCAGTGAGTTCGAGGCCAGCC  250

seq1  TGACCTACAAAGT  262
      |||||||||||||
seq2  TGACCTACAAAGT  263