BAC Information

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BAC

Clone NameB6Ng01-021G06
Chromosome2 (Build37)
Map Location 11,833,154 - 11,974,550
singlet/doubletdoublet
Overlap geneEG635919
Upstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16
Downstream geneLOC667247, Itga8, 2310047O13Rik, LOC100040837, Pter, C1ql3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021G06.bB6Ng01-021G06.g
ACCDH853909DH853910
length1,203942
definitionDH853909|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G06, 5' end.DH853910|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,973,304 - 11,974,550)(11,833,154 - 11,834,101)
sequence
gaattctgtccttcttggtatagatacaaacccttccatctaaaagcatg
ctttctaaatctaaactccactgcagatgtcctaaaatggaagaaatcaa
gcaatgagatgtaatggaagacataattaattgtcctagagctagtgacc
aaaatcacaatgaagcaggtcagtccttgaagacttgagtaatccctgag
tgacagaagagaaacaagagcagcccaccaccccgccacatttgagggtt
tagacacatcttactgtgtaccctagagatgtctcccaaaagctttgata
tctccagagacaacttcagaaaggaatgatgactttgtaggtgaaccttg
tatgaagctacctgcatccccgagaaatcactaaagctaaattctctaac
ctgaacaatgcaatgagcccaagaggcccagtggcacacaaaataggagt
ggagttattgcaccaaccacttcatcacttctacttcatgtcacatgaga
tgaagtgatgagtgggtcccataacacgcttttagaagctgcttttacac
tgagcattaactcctcccttgggctcagaaagtaaggacgtgcaaggtga
gagcaggcatctctgccttcaatctctttccgtctcctttaccttgagtt
gaactcctgcctaactctgcctaattatggtaaccactgaaggagtgtct
gcctatctaatctatctcactccttttcaaggctacaggcatgaagataa
gtcattgtcctaaacagtgagtctgcttgtattttggaaacagcaaggcc
ttgtgggcaaatcatccatgtgatgaggctgcaccctaaagcagaagtgg
tgtatcctcttaaacagtcaggcttggactaccttcaaggctgaagcaga
gacaatgaccaaagaaagcccctttgaccatgacaccgctatcacatgct
ttcttgttccaaattcttctctattaagctaatctcatgtcagtacccaa
gatgacttggggtcatgacccctatgtgctcctcctccacgagtcacttt
tagtatgatctttattgagctaactggtccagtcttgttctgacgctgtg
ttcacctggatgttgtacagaattcatgaaatcaggctggaatactcagc
aaactcttgggtgttcgcttgcacttgcattgcaaacagttactggaacc
tgg
gaattcctcccagaaaaataacatatccatttattcttaagtttcctaca
ttttatctttcaattttttcaactgtttcatgggactcactgtacatttt
ggacaaagtgaagccatgagttctttttatatgcatggttgatttgaaaa
tgatgaaggctatttctgtgttgcaaaacttagttttgtaccaatgacag
gtggttctcagaccattttcaattcacctagcaaaattatgtgagtcagt
aactggacaccagtgtagcctacgggacagtgatttttgatatgagactt
atttttctgtgaacgacattcgaaatgttggtctatttacctctattaaa
caaagcatcagatattatgttttccccttatcctaactagcataatactg
gatttacatttattatttaaaaattattattattatcatcattattttaa
attgtatgctcatgtttgtgcttgtagttgagtgtgcagatgtgtgcagg
tggctgaagaaggcacaggtattagatgtctctggagctggagttagagt
tggttgtgagccacacagccacacagtgtcctggctactgcactcaactc
aactcctcctgtgcagaagctgtacctgctgttaactggagctgtgtctc
caattgtaatttccatctttttatgattatagtagtggtataaattgtat
atcaatgttcctcttcttttctaaagcttattttcctttgtaggaaataa
attattttatttgtaatacctggtaagttttatggataggggaaataaac
tttttttgtgtgttttattttacaaatttaatattcatctgaaaagatat
catttttctgtaggtcttcaagaaactttccgatgaaaggagaggttggg
aaattatttaaatcatatttattagatacagcataaggtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_11973304_11974550
seq2: B6Ng01-021G06.b_47_1249 (reverse)

seq1  CCAGGTTTTCCAGTAACTTGTTTTGTCCATTAGCAAAG-ATGACAAAGCA  49
      |||||  |||||||||| |||||         |||| | | |   |||| 
seq2  CCAGG--TTCCAGTAAC-TGTTT---------GCAATGCAAGTGCAAGCG  38

seq1  GACAACTCAAAGATGTTTGCTGTGAGTTTATCTCCAGCCTGGATTCTCAT  99
       |||   | |||| |||||||| |    ||| |||||||| |||| ||||
seq2  AACA--CCCAAGA-GTTTGCTGAG----TAT-TCCAGCCT-GATT-TCAT  78

seq1  GAATTCTGTAACAACCATTCCAGTGTGAACACAGCGTCAGAGACAAGACT  149
      ||||||||| |||||   ||||| ||||||||||||||||| ||||||||
seq2  GAATTCTGT-ACAAC--ATCCAG-GTGAACACAGCGTCAGA-ACAAGACT  123

seq1  GGGCCACGTTAGCTCAATAAAGATTCCATTACTAAAAGTGACCTCGTGGG  199
      || ||| |||||||||||||||||  || |||||||||||| ||||| ||
seq2  GGACCA-GTTAGCTCAATAAAGAT--CA-TACTAAAAGTGA-CTCGT-GG  167

seq1  AGGAGGAGCACATAGGGGGTCCATTGACCCCAAGTTCATCTTTGGGTACT  249
      |||||||||||||| ||||||   |||||||||| ||||| |||||||||
seq2  AGGAGGAGCACATA-GGGGTC--ATGACCCCAAG-TCATC-TTGGGTACT  212

seq1  GACATGAGATTTAGCTTTAAATAGAGAAGAATTTGGAACAAGAAAGCATG  299
      ||||||||| |||||||  |||||||||||||||||||||||||||||||
seq2  GACATGAGA-TTAGCTT--AATAGAGAAGAATTTGGAACAAGAAAGCATG  259

seq1  TGGATAGCGGTGTTCATGGTCAAAGGGGGCTTTCTTTGGTCATTGTCTCT  349
      | |||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  T-GATAGCGGTG-TCATGGTCAAA-GGGGCTTTCTTTGGTCATTGTCTCT  306

seq1  GCTTCAGCCTTGAAGGTAGTCCAAGCCCTGACTGTTTAAGAGGATACACC  399
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTTCAGCCTTGAAGGTAGTCCAAG-CCTGACTGTTTAAGAGGATACACC  355

seq1  ACTTCTGCTTTAGGGTGCAGCCTCATCACATGGATGATTTGCCCACAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCTTTAGGGTGCAGCCTCATCACATGGATGATTTGCCCACAAGG  405

seq1  CCTTGCTGTTTCCAAAATACAAGCAGACTCACTGTTTAGGACAATGACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGTTTCCAAAATACAAGCAGACTCACTGTTTAGGACAATGACTT  455

seq1  ATCTTCATGCCTGTAGCCTTGAAAAGGAGTGAGATAGATTAGATAGGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATGCCTGTAGCCTTGAAAAGGAGTGAGATAGATTAGATAGGCAG  505

seq1  ACACTCCTTCAGTGGTTACCATAATTAGGCAGAGTTAGGCAGGAGTTCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTTCAGTGGTTACCATAATTAGGCAGAGTTAGGCAGGAGTTCAA  555

seq1  CTCAAGGTAAAGGAGACGGAAAGAGATTGAAGGCAGAGATGCCTGCTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGTAAAGGAGACGGAAAGAGATTGAAGGCAGAGATGCCTGCTCTC  605

seq1  ACCTTGCACGTCCTTACTTTCTGAGCCCAAGGGAGGAGTTAATGCTCAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCACGTCCTTACTTTCTGAGCCCAAGGGAGGAGTTAATGCTCAGT  655

seq1  GTAAAAGCAGCTTCTAAAAGCGTGTTATGGGACCCACTCATCACTTCATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCAGCTTCTAAAAGCGTGTTATGGGACCCACTCATCACTTCATC  705

seq1  TCATGTGACATGAAGTAGAAGTGATGAAGTGGTTGGTGCAATAACTCCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGACATGAAGTAGAAGTGATGAAGTGGTTGGTGCAATAACTCCAC  755

seq1  TCCTATTTTGTGTGCCACTGGGCCTCTTGGGCTCATTGCATTGTTCAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTTGTGTGCCACTGGGCCTCTTGGGCTCATTGCATTGTTCAGGT  805

seq1  TAGAGAATTTAGCTTTAGTGATTTCTCGGGGATGCAGGTAGCTTCATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATTTAGCTTTAGTGATTTCTCGGGGATGCAGGTAGCTTCATACA  855

seq1  AGGTTCACCTACAAAGTCATCATTCCTTTCTGAAGTTGTCTCTGGAGATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCACCTACAAAGTCATCATTCCTTTCTGAAGTTGTCTCTGGAGATA  905

seq1  TCAAAGCTTTTGGGAGACATCTCTAGGGTACACAGTAAGATGTGTCTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTTTTGGGAGACATCTCTAGGGTACACAGTAAGATGTGTCTAAA  955

seq1  CCCTCAAATGTGGCGGGGTGGTGGGCTGCTCTTGTTTCTCTTCTGTCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAATGTGGCGGGGTGGTGGGCTGCTCTTGTTTCTCTTCTGTCACT  1005

seq1  CAGGGATTACTCAAGTCTTCAAGGACTGACCTGCTTCATTGTGATTTTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTACTCAAGTCTTCAAGGACTGACCTGCTTCATTGTGATTTTGG  1055

seq1  TCACTAGCTCTAGGACAATTAATTATGTCTTCCATTACATCTCATTGCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGCTCTAGGACAATTAATTATGTCTTCCATTACATCTCATTGCTT  1105

seq1  GATTTCTTCCATTTTAGGACATCTGCAGTGGAGTTTAGATTTAGAAAGCA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTCCATTTTAGGACATCTGCAGTGGAGTTTAGATTTAGAAAGCA  1155

seq1  TGCTTTTAGATGGAAGGGTTTGTATCTATACCAAGAAGGACAGAATTC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAGATGGAAGGGTTTGTATCTATACCAAGAAGGACAGAATTC  1203

seq1: chr2_11833154_11834101
seq2: B6Ng01-021G06.g_66_1007

seq1  GAATTCCTCCCAGAAAAATAACATATCCATTTATTCTTAAGTTTCCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCAGAAAAATAACATATCCATTTATTCTTAAGTTTCCTACA  50

seq1  TTTTATCTTTCAATTTTTTCAACTGTTTCATGGGACTCACTGTACATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTTCAATTTTTTCAACTGTTTCATGGGACTCACTGTACATTTT  100

seq1  GGACAAAGTGAAGCCATGAGTTCTTTTTATATGCATGGTTGATTTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGTGAAGCCATGAGTTCTTTTTATATGCATGGTTGATTTGAAAA  150

seq1  TGATGAAGGCTATTTCTGTGTTGCAAAACTTAGTTTTGTACCAATGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGGCTATTTCTGTGTTGCAAAACTTAGTTTTGTACCAATGACAG  200

seq1  GTGGTTCTCAGACCATTTTCAATTCACCTAGCAAAATTATGTGAGTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTCAGACCATTTTCAATTCACCTAGCAAAATTATGTGAGTCAGT  250

seq1  AACTGGACACCAGTGTAGCCTACGGGACAGTGATTTTTGATATGAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACACCAGTGTAGCCTACGGGACAGTGATTTTTGATATGAGACTT  300

seq1  ATTTTTCTGTGAACGACATTCGAAATGTTGGTCTATTTACCTCTATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGTGAACGACATTCGAAATGTTGGTCTATTTACCTCTATTAAA  350

seq1  CAAAGCATCAGATATTATGTTTTCCCCTTATCCTAACTAGCATAATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATCAGATATTATGTTTTCCCCTTATCCTAACTAGCATAATACTG  400

seq1  GATTTACATTTATTATTTAAAAATTATTATTATTATCATCATTATTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACATTTATTATTTAAAAATTATTATTATTATCATCATTATTTTAA  450

seq1  ATTGTATGCTCATGTTTGTGCTTGTAGTTGAGTGTGCAGATGTGTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGCTCATGTTTGTGCTTGTAGTTGAGTGTGCAGATGTGTGCAGG  500

seq1  TGGCTGAAGAAGGCACAGGTATTAGATGTCTCTGGAGCTGGAGTTAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAAGAAGGCACAGGTATTAGATGTCTCTGGAGCTGGAGTTAGAGT  550

seq1  TGGTTGTGAGCCACACAGCCACACAGTGTCCTGGCTACTGCACTCAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGAGCCACACAGCCACACAGTGTCCTGGCTACTGCACTCAACTC  600

seq1  AACTCCTCCTGTGCAGAAGCTGTACCTGCTGTTAACTGGAGCTGTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTCCTGTGCAGAAGCTGTACCTGCTGTTAACTGGAGCTGTGTCTC  650

seq1  CAATTGTAATTTCCATCTTTTTATGATTATAGTAGTGGTATAAATTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTAATTTCCATCTTTTTATGATTATAGTAGTGGTATAAATTGTAT  700

seq1  ATCAATGTTCCTCTTCTTTTCTAAAGCTTA-TTTCCTTTGTAGGAAATAA  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCAATGTTCCTCTTCTTTTCTAAAGCTTATTTTCCTTTGTAGGAAATAA  750

seq1  ATTATTTTATTTGTAATACCTGGTAAGTTTTATGGATAGGGGAAATAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTATTTGTAATACCTGGTAAGTTTTATGGATAGGGGAAATAAAC  800

seq1  -TTTTTTGTGTGTTTTATTTTACAAATTTAATATTCATCTGAAAGGATAT  848
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTTTTGTGTGTTTTATTTTACAAATTTAATATTCATCTGAAAAGATAT  850

seq1  CATTTTTCTGTAGGTCTTCAAAGAAAACTTCCGATGAAAAGGAAGAGGTA  898
      ||||||||||||||||||| ||||||  |||||||||||  | |||||| 
seq2  CATTTTTCTGTAGGTCTTC-AAGAAACTTTCCGATGAAA--GGAGAGGT-  896

seq1  TGGGAAATTAATTTAAAATCATATTTATTAAGATACAGCATAAAGGTCAA  948
      ||||||||||  || |||||||||||||| ||||||||||| ||||||||
seq2  TGGGAAATTA--TTTAAATCATATTTATT-AGATACAGCAT-AAGGTCAA  942