BAC Information

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BAC

Clone NameB6Ng01-021J16
Chromosome2 (Build37)
Map Location 73,984,161 - 74,127,531
singlet/doubletdoublet
Overlap geneLOC100040172
Upstream geneGtpbp9, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729
Downstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021J16.bB6Ng01-021J16.g
ACCDH854062DH854063
length848811
definitionDH854062|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J16, 5' end.DH854063|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,984,161 - 73,985,007)(74,126,721 - 74,127,531)
sequence
gaattcccaagagtccccgaattagacagttgactaggtttccatgggac
accttgcttccctagtgtctgctgccatcaaggccaccaatcttctttcc
tttccttaaaaaaaaaatccatttatttttaattatgtgtgaggagtggg
tacaagtgagtgcggatacctgccaaggccagaggtgttcagttctgtgg
agatggaggtggttatgagctgctcccgtgggtgttggggactcaaacga
gggtcttctgggagaaccgcacaggctcataactgctgcaaatctctcca
ggctgcagccgcctttaaaatgtttacttttaattacatgcatggtgtat
gtctatatatttaaaagatttattttattttttaattatttaagacctat
ctaaactagattgcttctcatccggagtagacctcactaaattttcattt
caaaagttagctgtggggctgcagagagtagatgctgttcttgcagaact
aagattagttcctaacacccaaatcaagtggatcatggccacctgtcagt
tccagctccaggtgatcccatggcctccataggccctgcactcacgtgag
gatagccctccattccatcccacataaacataatttaaacataaaataaa
cctcaaagaaaaaagtcacttgaaatacaggcacgccagcaagttttttg
ttgaacctctgcaaagatctggctttctttatccccaaggagcttggagc
ttttctaaatagaacatttctttgttctttgttttggtggagtatggatg
cactacagtcatcacacatagtcacttattcacagtttacttcctatt
gaattcaggacctctggaagtgcagccaatgctcctcaccactgagccat
ctctccagctccctacactatttgtttaagtacgacaggtcattgcttca
gtcagagagtactgtagattaagggggtggtatgtagggcaggaatatga
ttttctagtttttgtgaaacaattataaatagttgagaagccacagaaat
cttacatgagggatggctcatctgtaggactagaaaggccactgggacca
gtgagccaagggaagaggtggttcacagcagacgaggctacagcacagct
ttaaaaatagccatggtaattttgcagcaaaacagaacaatgaaggcagg
agtcatggtgctcaaaaaagacactggccccagcacaatgggctttcatt
ggctaagctattttcatagcaaatccaaatttcaaaatgtcaacctgata
aataggagagatcagaaaggataaagtcagggtgtttttctttaatactt
taagaataataaaaagaaacatgctcttgtttctaacagtcttttaaagc
ttttgaggggaaaaaaaagatgtgcttcgaagggacccagttatatcttt
tctagatgctattttaatacacacaactattaagtaggttagaccatatt
acaaggctcattttttccttctgtaatattctctagaatattggttagaa
ttcaataaccatgaagagctataaatgtttaaaacatattaccttactct
tatttccattttctctgcatgtgatgctgccctggtagatctgggtctgc
cagcattctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73984161_73985007
seq2: B6Ng01-021J16.b_43_889

seq1  GAATTCCCAAGAGTCCCCGAATTAGACAGTTGACTAGGTTTCCATGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGAGTCCCCGAATTAGACAGTTGACTAGGTTTCCATGGGAC  50

seq1  ACCTTGCTTCCCTAGTGTCTGCTGCCATCAAGGCCACCAATCTTCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTTCCCTAGTGTCTGCTGCCATCAAGGCCACCAATCTTCTTTCC  100

seq1  TTTCCTTAAAAAAAAAATCCATTTATTTTTAATTATGTGTGAGGAGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAAAAAAAAATCCATTTATTTTTAATTATGTGTGAGGAGTGGG  150

seq1  TACAAGTGAGTGCGGATACCTGCCAAGGCCAGAGGTGTTCAGTTCTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGAGTGCGGATACCTGCCAAGGCCAGAGGTGTTCAGTTCTGTGG  200

seq1  AGATGGAGGTGGTTATGAGCTGCTCCCGTGGGTGTTGGGGACTCAAACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGTGGTTATGAGCTGCTCCCGTGGGTGTTGGGGACTCAAACGA  250

seq1  GGGTCTTCTGGGAGAACCGCACAGGCTCATAACTGCTGCAAATCTCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTCTGGGAGAACCGCACAGGCTCATAACTGCTGCAAATCTCTCCA  300

seq1  GGCTGCAGCCGCCTTTAAAATGTTTACTTTTAATTACATGCATGGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGCCGCCTTTAAAATGTTTACTTTTAATTACATGCATGGTGTAT  350

seq1  GTCTATATATTTAAAAGATTTATTTTATTTTTTAATTATTTAAGACCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATATATTTAAAAGATTTATTTTATTTTTTAATTATTTAAGACCTAT  400

seq1  CTAAACTAGATTGCTTCTCATCCGGAGTAGACCTCACTAAATTTTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTAGATTGCTTCTCATCCGGAGTAGACCTCACTAAATTTTCATTT  450

seq1  CAAAAGTTAGCTGTGGGGCTGCAGAGAGTAGATGCTGTTCTTGCAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTAGCTGTGGGGCTGCAGAGAGTAGATGCTGTTCTTGCAGAACT  500

seq1  AAGATTAGTTCCTAACACCCAAATCAAGTGGATCATGGCCACCTGTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGTTCCTAACACCCAAATCAAGTGGATCATGGCCACCTGTCAGT  550

seq1  TCCAGCTCCAGGTGATCCCATGGCCTCCATAGGCCCTGCACTCACGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCCAGGTGATCCCATGGCCTCCATAGGCCCTGCACTCACGTGAG  600

seq1  GATAGCCCTCCATTCCATCCCACATAAACATAATTTAAACATAAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCCTCCATTCCATCCCACATAAACATAATTTAAACATAAAATAAA  650

seq1  CCTCAAAGAAAAAAGTCACTTGAAATACAGGCACGCCAGCAAG-TGTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  CCTCAAAGAAAAAAGTCACTTGAAATACAGGCACGCCAGCAAGTTTTTTG  700

seq1  TTGAACCTCTGCAAAGATCTGGC-TTCTTTATCCCCAAGGAGCTTGGAGC  748
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGAACCTCTGCAAAGATCTGGCTTTCTTTATCCCCAAGGAGCTTGGAGC  750

seq1  -TTTCTAAATAGAACATTTCTTTGTTCTTTGTTGTTGGTGGAGTATGGAT  797
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTCTAAATAGAACATTTCTTTGTTCTTTGTT-TTGGTGGAGTATGGAT  799

seq1  GCACTACAGTCATCACACATTAGTCACTTATTCACAGTTTTACTTCCTAT  847
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GCACTACAGTCATCACACA-TAGTCACTTATTCACAG-TTTACTTCCTAT  847

seq1: chr2_74126721_74127531
seq2: B6Ng01-021J16.g_69_879 (reverse)

seq1  ACAG-ATGCTGGCAGACCCTGATCTACCAGGACAGCATTCACATGCAGAA  49
      |||| |||||||||||||| ||||||||||| ||||| |||||||||| |
seq2  ACAGAATGCTGGCAGACCCAGATCTACCAGGGCAGCA-TCACATGCAG-A  48

seq1  GAAAATGGAAATTAGAGTAAGGTATTATGTTTTAAACTTTTATAGCTCTT  99
      |||||||||||| ||||||||||| |||||||||||| ||||||||||||
seq2  GAAAATGGAAATAAGAGTAAGGTAATATGTTTTAAACATTTATAGCTCTT  98

seq1  CATGGTTATTGAATTCTAACCAATATTCTAGAGAATATTACAG-AGGAAA  148
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATGGTTATTGAATTCTAACCAATATTCTAGAGAATATTACAGAAGGAAA  148

seq1  AAATGAGCCTTGTAATATGGTCTAAACCTACTTAATAGTTGTGTGTATTA  198
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATGAGCCTTGTAATATGGTCT-AACCTACTTAATAGTTGTGTGTATTA  197

seq1  AAATAGCATCTAGAAAAGATATAACTGGGTCCCTTCGAAGCACATCTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCATCTAGAAAAGATATAACTGGGTCCCTTCGAAGCACATCTTTT  247

seq1  TTTTCCCCTC-AAAGCTTTAAAAGACTGTTAGAAACAAGAGCATGTTTCT  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCTCAAAAGCTTTAAAAGACTGTTAGAAACAAGAGCATGTTTCT  297

seq1  TTTTATTATTCTTAAAGTATTAAAGAAAAACACCCTGACTTTATCCTTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATTCTTAAAGTATTAAAGAAAAACACCCTGACTTTATCCTTTC  347

seq1  TGATCTCTCCTATTTATCAGGTTGACATTTTGAAATTTGGATTTGCTATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTCCTATTTATCAGGTTGACATTTTGAAATTTGGATTTGCTATG  397

seq1  AAAATAGCTTAGCCAATGAAAGCCCATTGTGCTGGGGCCAGTGTCTTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTTAGCCAATGAAAGCCCATTGTGCTGGGGCCAGTGTCTTTTT  447

seq1  TGAGCACCATGACTCCTGCCTTCATTGTTCTGTTTTGCTGCAAAATTACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCATGACTCCTGCCTTCATTGTTCTGTTTTGCTGCAAAATTACC  497

seq1  ATGGCTATTTTTAAAGCTGTGCTGTAGCCTCGTCTGCTGTGAACCACCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTATTTTTAAAGCTGTGCTGTAGCCTCGTCTGCTGTGAACCACCTC  547

seq1  TTCCCTTGGCTCACTGGTCCCAGTGGCCTTTCTAGTCCTACAGATGAGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGGCTCACTGGTCCCAGTGGCCTTTCTAGTCCTACAGATGAGCC  597

seq1  ATCCCTCATGTAAGATTTCTGTGGCTTCTCAACTATTTATAATTGTTTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCATGTAAGATTTCTGTGGCTTCTCAACTATTTATAATTGTTTCA  647

seq1  CAAAAACTAGAAAATCATATTCCTGCCCTACATACCACCCCCTTAATCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTAGAAAATCATATTCCTGCCCTACATACCACCCCCTTAATCTA  697

seq1  CAGTACTCTCTGACTGAAGCAATGACCTGTCGTACTTAAACAAATAGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTCTCTGACTGAAGCAATGACCTGTCGTACTTAAACAAATAGTGT  747

seq1  AGGGAGCTGGAGAGATGGCTCAGTGGTGAGGAGCATTGGCTGCACTTCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTGGAGAGATGGCTCAGTGGTGAGGAGCATTGGCTGCACTTCCA  797

seq1  GAGGTCCTGAATTC  811
      ||||||||||||||
seq2  GAGGTCCTGAATTC  811