BAC Information

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BAC

Clone NameB6Ng01-022A21
Chromosome2 (Build37)
Map Location 26,099,959 - 26,257,995
singlet/doubletdoublet
Overlap geneC030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e
Upstream geneLOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1
Downstream geneAU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022A21.bB6Ng01-022A21.g
ACCDH854389DH854390
length898739
definitionDH854389|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A21, 5' end.DH854390|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,099,959 - 26,100,857)(26,257,258 - 26,257,995)
sequence
gaattcctcaagacagcccatccatttgattgctctgggccccaccgagc
ctccgtggagctaaggtagagaaggtttcatcactgtctaagcctgggta
ccagtacccagcagctacaaccaagacggcactgtggctcctgggcagcc
agcagtgagtggcaggcagcctgctgtccctcacgatctgctgagggagg
taaaggtggtgcctctgacagaagtcactgcttttagtggcctgtcctca
cccttatacatgcccccaaattgttctattctcctggggaactaactatg
ggagtccattccagggccactccactccctatagagatcctgcaccccag
tcccctggtgagcccacccctgagctggatgaggtcatgggcattgcaag
ctggtctcagtcccaccattaagcaggaaatcctgactggttggatcaac
aagtccctggatgtctgtcctgcgggaagaaggtgttcttgtagagaatg
gtcacactttcttgtaagaaccacctgtgtcacctgcccacactttcaat
aaccaccctggtcattctgtcccagaaggcccccagggaataaaggaggc
agtctaggccttggtgtagtcagccaggcctgcaagagacaagacttttt
tttttgaggctccagtcactgttttcctgagaaaatcagtgtccaagcaa
atactatgatagcaaaagtaagataaaataataaatcacaggacaaagaa
agaaccctcagcccggggaacaaggtgtaggctttgtcaagagtgactag
ttatctgctttccatctccacaggatgaacaaatgtcctcagccacaaac
aatctgaagacatagtttttttggtttggtttggtttggtttggtggt
gaattcagagggagatgagggccatctgtgttgccatctgtgttggtatt
gtactctggctaaggaaatctcaactctaggggcaatactgatggctggt
atggacaggattgtcctcaggcccaaatggcttatagaactgataccttt
ggagagtgtggtcccaaaggtacctttcctgagtgaaggaactcctgggt
cactctggcatcactgaagctggctgctcacttgcctcttttttttttgt
aggagctatctggagggaagtcttctggccagtggggccctgctaggagc
agaagagctggccaggtacttcccagaccgaaacatggctctcttcgtgg
ctacctggaacatgcagggccagaaggtgagaggggtcacagtgaggtaa
ggcagaggcagctggactccatgtcctgactgatcacagcataatggctc
tgtgagtctccgtgagggatcggggttgggcatgcactgggaggatgggc
ataccccccaggcagcctgcgcagattgaagcgcctggtaagaaggggcg
cctgctgggaagtagcaactgagcagttgtgccttaagagggagacttaa
gtatctgtcatgtcaaggtccctggaagaccaaacctacagctgtgtaca
cttctctttgaaaagaagctatttctgggaccatttccagggtgatggtg
cagggccttgctcttgaacctctgctcccaacctgaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_26099959_26100857
seq2: B6Ng01-022A21.b_46_943

seq1  GAATTCCTCAAGACAGCCCATCCATTTGATTGCTCTGGGCCCCACCGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAGACAGCCCATCCATTTGATTGCTCTGGGCCCCACCGAGC  50

seq1  CTCCGTGGAGCTAAGGTAGAGAAGGTTTCATCACTGTCTAAGCCTGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGGAGCTAAGGTAGAGAAGGTTTCATCACTGTCTAAGCCTGGGTA  100

seq1  CCAGTACCCAGCAGCTACAACCAAGACGGCACTGTGGCTCCTGGGCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCCAGCAGCTACAACCAAGACGGCACTGTGGCTCCTGGGCAGCC  150

seq1  AGCAGTGAGTGGCAGGCAGCCTGCTGTCCCTCACGATCTGCTGAGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAGTGGCAGGCAGCCTGCTGTCCCTCACGATCTGCTGAGGGAGG  200

seq1  TAAAGGTGGTGCCTCTGACAGAAGTCACTGCTTTTAGTGGCCTGTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGGTGCCTCTGACAGAAGTCACTGCTTTTAGTGGCCTGTCCTCA  250

seq1  CCCTTATACATGCCCCCAAATTGTTCTATTCTCCTGGGGAACTAACTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATACATGCCCCCAAATTGTTCTATTCTCCTGGGGAACTAACTATG  300

seq1  GGAGTCCATTCCAGGGCCACTCCACTCCCTATAGAGATCCTGCACCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCATTCCAGGGCCACTCCACTCCCTATAGAGATCCTGCACCCCAG  350

seq1  TCCCCTGGTGAGCCCACCCCTGAGCTGGATGAGGTCATGGGCATTGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGTGAGCCCACCCCTGAGCTGGATGAGGTCATGGGCATTGCAAG  400

seq1  CTGGTCTCAGTCCCACCATTAAGCAGGAAATCCTGACTGGTTGGATCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTCAGTCCCACCATTAAGCAGGAAATCCTGACTGGTTGGATCAAC  450

seq1  AAGTCCCTGGATGTCTGTCCTGCGGGAAGAAGGTGTTCTTGTAGAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGGATGTCTGTCCTGCGGGAAGAAGGTGTTCTTGTAGAGAATG  500

seq1  GTCACACTTTCTTGTAAGAACCACCTGTGTCACCTGCCCACACTTTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTTTCTTGTAAGAACCACCTGTGTCACCTGCCCACACTTTCAAT  550

seq1  AACCACCCTGGTCATTCTGTCCCAGAAGGCCCCCAGGGAATAAAGGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCTGGTCATTCTGTCCCAGAAGGCCCCCAGGGAATAAAGGAGGC  600

seq1  AGTCTAGGCCTTGGTGTAGTCAGCCAGGCCTGCAAGAGACAAGACTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGCCTTGGTGTAGTCAGCCAGGCCTGCAAGAGACAAGACTTTTT  650

seq1  TTTTTGAGGCTCCAGTCACTGTTTTCCTGAGAAAATCAGTGTCCAAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGGCTCCAGTCACTGTTTTCCTGAGAAAATCAGTGTCCAAGCAA  700

seq1  ATACTATGATAGCAAAAGTAAGATAAAATAATAAATCACAGGACAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATGATAGCAAAAGTAAGATAAAATAATAAATCACAGGACAAAGAA  750

seq1  AGAA-CCTCAGCCCCGGGAACAAGGTGTAGGCTTTGTCAAGAGTGACTAG  799
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGAACCCTCAGCCCGGGGAACAAGGTGTAGGCTTTGTCAAGAGTGACTAG  800

seq1  TTATCTGCTTTCCATCTCCACAGGATGAACAAATGTCCCTCAGCCACAAA  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATCTGCTTTCCATCTCCACAGGATGAACAAATGT-CCTCAGCCACAAA  849

seq1  CAATCTGAAGACATAGGTTTTTTTGGTTTGGTTTGGTTTGGTTTGGTTGT  899
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  CAATCTGAAGACATA-GTTTTTTTGGTTTGGTTTGGTTTGGTTTGGTGGT  898

seq1: chr2_26257258_26257995
seq2: B6Ng01-022A21.g_67_805 (reverse)

seq1  CCCTCAGGTTGGGAGCAGAGGTTCAAGAGCAAGGCCCTGCACCATCA-CC  49
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCTCAGGTTGGGAGCAGAGGTTCAAGAGCAAGGCCCTGCACCATCACCC  50

seq1  TGGAAATGGTCCCAGAAATAGCTTCTTTTCAAAGAGAAGTGTACACAGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGGTCCCAGAAATAGCTTCTTTTCAAAGAGAAGTGTACACAGCT  100

seq1  GTAGGTTTGGTCTTCCAGGGACCTTGACATGACAGATACTTAAGTCTCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTGGTCTTCCAGGGACCTTGACATGACAGATACTTAAGTCTCCC  150

seq1  TCTTAAGGCACAACTGCTCAGTTGCTACTTCCCAGCAGGCGCCCCTTCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGCACAACTGCTCAGTTGCTACTTCCCAGCAGGCGCCCCTTCTT  200

seq1  ACCAGGCGCTTCAATCTGCGCAGGCTGCCTGGGGGGTATGCCCATCCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCGCTTCAATCTGCGCAGGCTGCCTGGGGGGTATGCCCATCCTCC  250

seq1  CAGTGCATGCCCAACCCCGATCCCTCACGGAGACTCACAGAGCCATTATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATGCCCAACCCCGATCCCTCACGGAGACTCACAGAGCCATTATG  300

seq1  CTGTGATCAGTCAGGACATGGAGTCCAGCTGCCTCTGCCTTACCTCACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCAGTCAGGACATGGAGTCCAGCTGCCTCTGCCTTACCTCACTG  350

seq1  TGACCCCTCTCACCTTCTGGCCCTGCATGTTCCAGGTAGCCACGAAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCTCTCACCTTCTGGCCCTGCATGTTCCAGGTAGCCACGAAGAGA  400

seq1  GCCATGTTTCGGTCTGGGAAGTACCTGGCCAGCTCTTCTGCTCCTAGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTTCGGTCTGGGAAGTACCTGGCCAGCTCTTCTGCTCCTAGCAG  450

seq1  GGCCCCACTGGCCAGAAGACTTCCCTCCAGATAGCTCCTACAAAAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCACTGGCCAGAAGACTTCCCTCCAGATAGCTCCTACAAAAAAAAA  500

seq1  AGAGGCAAGTGAGCAGCCAGCTTCAGTGATGCCAGAGTGACCCAGGAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAGTGAGCAGCCAGCTTCAGTGATGCCAGAGTGACCCAGGAGTT  550

seq1  CCTTCACTCAGGAAAGGTACCTTTGGGACCACACTCTCCAAAGGTATCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTCAGGAAAGGTACCTTTGGGACCACACTCTCCAAAGGTATCAG  600

seq1  TTCTATAAGCCATTTGGGCCTGAGGACAATCCTGTCCATACCAGCCATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAGCCATTTGGGCCTGAGGACAATCCTGTCCATACCAGCCATCA  650

seq1  GTATTGCCCCTAGAGTTGAGATTTCCTTAGCCAGAGTACAATACCAACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCCCCTAGAGTTGAGATTTCCTTAGCCAGAGTACAATACCAACAC  700

seq1  AGATGGCAACACAGATGGCCCTCATCTCCCTCTGAATTC  738
      |||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAACACAGATGGCCCTCATCTCCCTCTGAATTC  739