BAC Information

Click to search

BAC

Clone NameB6Ng01-022I18
Chromosome2 (Build37)17 (Build37)
Map Location 142,776,266 - 142,776,81655,309,271 - 55,310,255
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022I18.bB6Ng01-022I18.g
ACCDH854727DH854728
length969975
definitionDH854727|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I18, 5' end.DH854728|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,266 - 142,776,816)(55,309,271 - 55,310,255)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgctt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ttatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggattgattcat
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccatagtgtgtgggttaatttctgggtcttcaattctgttccattgct
ctacctgtctgtctctataccagtaccatgcggttttttatcacaattgg
tctgtagtaaagctttaggtcaggcatggttgattccaccagaggttctt
ttatccttgagaagagttttttgctatcctaggttttttgttattccaga
tgaatttgcaaattgctccttctaattcgttgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgctttttggcaagatagcca
tttttacaatgttgatcctgccaatccatgagcattgggagatctttcca
tcttctgagatctttttaatttctttcttcagagacttgagtttttatca
tacagatctttcaactcttagtagagtcacgccagatatttatattattt
gtgactttgagagggtgtt
gaattctttgtttagctctgtaccccatttttaatggggtcatttgaatt
tctggagtccagcttcttgagctctttctatatattggatattagtcctc
tatcagatttaggattggtaaaaatcctttcccaatctgttggtggccct
tttgtctaattgacagtgtcttttgccttatagaagctttgcaattttat
gaggtcccatttgtcaattctttttgtttgtttgttttacttgtaatcat
tcattcatttattcaacactgaagtaagactacatatttctgatgttgta
agacactgggagcatcatgtttagaacaatggaggtggacatgccttaat
gcaggagccttggaaaaggagacagataattgaggtatgcatatgccaac
aagataatggctgattatggtgttgtaaagcagatggctttgattgactg
tccagaaagacagtctccagggaaaataatactgtagaggccaaaagcag
agaaagggccaggcacatagaaaagagtgctaaagagagcaagcacaaat
actcaaacatacaactcaattttggaatattccagaaactagctgacatc
tacagtggttgatcccagagtggaggcaggaggagaagcataaggaacca
gggtgtggctcttgacttgtatgcccaaccatgttctggtgcttctgtgt
caaggtttattttactttactatgtgtgcacgtgtgtgtctgtgtgaatg
tatatcatatgtatgtgccctggagaggacagcttataagcacaagccat
tgctgttctgttagaaattttccccagtgcccatatcttcgaggctttcc
ccactttctcctcataaatttcagtgtctctgttttatcttgaattcttt
ggtccactagactgagctttgacaagaaacttgattttgaaggatacatg
taaaaaaatgcaaattctctgctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776266_142776816
seq2: B6Ng01-022I18.b_470_1016 (reverse)

seq1  AACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTC  50
      ||||||| |||||| ||||||||||||||| |||||||| ||||||||||
seq2  AACACCC-TCTCAA-AGTCACAAATAATAT-AAATATCT-GGCGTGACTC  46

seq1  TAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAG  100
      | ||||| ||  ||||||||||||||||||||||| ||||||||||||||
seq2  T-ACTAA-GAGTTGAAAGATCTGTATGATAAAAAC-TCAAGTCTCTGAAG  93

seq1  AAAGAAATTAAAGAAGATCTCAGAAGATGGAAGGATCTCCC-ATGCTCAT  149
      |||||||||||| ||||||||||||||||||| |||||||| ||||||||
seq2  AAAGAAATTAAA-AAGATCTCAGAAGATGGAAAGATCTCCCAATGCTCAT  142

seq1  GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCC-AAAAGCAAT  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAAGCAAT  192

seq1  CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACG  242

seq1  AATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGG  292

seq1  ATAGC-AAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATC-ACC  346
      ||||| ||||| |||||||||||||||||||||||||||||||||| |||
seq2  ATAGCAAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCAACC  342

seq1  ATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGAT-AAAAACTGCAT  395
      ||||||||||||||||||||||||||| |||||||||| |||||| ||||
seq2  ATGCCTGACCTAAAGCTTTACTACAGACCAATTGTGATAAAAAACCGCAT  392

seq1  GGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGAC  445
      |||||||||||||||||||||| ||||| |||||||| ||||||||||||
seq2  GGTACTGGTATAGAGACAGACAGGTAGAGCAATGGAACAGAATTGAAGAC  442

seq1  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  495
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  CCAGAAATTAACCCACACA-CTATGGTCACTTGATCTTCGACAAGGGAGC  491

seq1  TAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  545
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGC  541

seq1  ACAACT  551
      ||||||
seq2  ACAACT  547

seq1: chr17_55309271_55310255
seq2: B6Ng01-022I18.g_71_1045

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTCATTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTCATTTGAATT  50

seq1  TCTGGAGTCCAGCTTCTTGAGCTCTTTCTATATATTGGATATTAGTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCAGCTTCTTGAGCTCTTTCTATATATTGGATATTAGTCCTC  100

seq1  TATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCCT  150

seq1  TTTGTCTAATTGACAGTGTCTTTTGCCTTATAGAAGCTTTGCAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAATTGACAGTGTCTTTTGCCTTATAGAAGCTTTGCAATTTTAT  200

seq1  GAGGTCCCATTTGTCAATTCTTTTTGTTTGTTTGTTTTACTTGTAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTCAATTCTTTTTGTTTGTTTGTTTTACTTGTAATCAT  250

seq1  TCATTCATTTATTCAACACTGAAGTAAGACTACATATTTCTGATGTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTTATTCAACACTGAAGTAAGACTACATATTTCTGATGTTGTA  300

seq1  AGACACTGGGAGCATCATGTTTAGAACAATGGAGGTGGACATGCCTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGGGAGCATCATGTTTAGAACAATGGAGGTGGACATGCCTTAAT  350

seq1  GCAGGAGCCTTGGAAAAGGAGACAGATAATTGAGGTATGCATATGCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCCTTGGAAAAGGAGACAGATAATTGAGGTATGCATATGCCAAC  400

seq1  AAGATAATGGCTGATTATGGTGTTGTAAAGCAGATGGCTTTGATTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGGCTGATTATGGTGTTGTAAAGCAGATGGCTTTGATTGACTG  450

seq1  TCCAGAAAGACAGTCTCCAGGGAAAATAATACTGTAGAGGCCAAAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAGACAGTCTCCAGGGAAAATAATACTGTAGAGGCCAAAAGCAG  500

seq1  AGAAAGGGCCAGGCACATAGAAAAGAGTGCTAAAGAGAGCAAGCACAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGCCAGGCACATAGAAAAGAGTGCTAAAGAGAGCAAGCACAAAT  550

seq1  ACTCAAACATACAACTCAATTTTGGAATATTCCAGAAACTAGCTGACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACATACAACTCAATTTTGGAATATTCCAGAAACTAGCTGACATC  600

seq1  TACAGTGGTTGATCCCAGAGTGGAGGCAGGAGGAGAAGCATAAGGAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGTTGATCCCAGAGTGGAGGCAGGAGGAGAAGCATAAGGAACCA  650

seq1  GGGTGTGGCTCTTGACTTGTATGCCCAACCATGTTCTGGTGCTTCTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGCTCTTGACTTGTATGCCCAACCATGTTCTGGTGCTTCTGTGT  700

seq1  CAAGGTTTATTTTACTTTACTATGTGTGCACGTGTGTGTCTGTGTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTATTTTACTTTACTATGTGTGCACGTGTGTGTCTGTGTGAATG  750

seq1  TATATCATATGTATGTG-CCTGGAGAGGACAGCTTAT-AGCACAAGCCAT  798
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TATATCATATGTATGTGCCCTGGAGAGGACAGCTTATAAGCACAAGCCAT  800

seq1  TGCTGTTCTGTTTAGAAATTTTTCCCCAGTGCCCATATCTTCGAGGCTTT  848
      |||||||||| ||||||| |||||||||||||||||||||||||||| ||
seq2  TGCTGTTCTG-TTAGAAA-TTTTCCCCAGTGCCCATATCTTCGAGGC-TT  847

seq1  TCCCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATCTGGAAT  898
      |||||||||||||||| |||||||||||||||||| ||||||||| ||||
seq2  TCCCCACTTTCTCCTC-ATAAATTTCAGTGTCTCT-GTTTTATCTTGAAT  895

seq1  TCTTTGATCCACTTAGACTTGAGCTTTGTACAAGAAACCTAGATTTTAAA  948
      |||||| ||||| ||||| ||||||||| |||||||| || |||||| ||
seq2  TCTTTGGTCCAC-TAGAC-TGAGCTTTG-ACAAGAAA-CTTGATTTTGAA  941

seq1  GGATACATGTAAAAAAAATGCAAAATGTCTCTGCTAA  985
      |||||||||| |||||||||||||   ||||||||||
seq2  GGATACATGT-AAAAAAATGCAAA--TTCTCTGCTAA  975