BAC Information

Click to search

BAC

Clone NameB6Ng01-022M18
Chromosome2 (Build37)1 (Build37)
Map Location 142,777,222 - 142,777,69847,908,737 - 47,909,747
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022M18.bB6Ng01-022M18.g
ACCDH854902DH854903
length4781,009
definitionDH854902|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M18, 5' end.DH854903|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,777,222 - 142,777,698)(47,908,737 - 47,909,747)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatgggtttt
gaattctcaaattgtctctgtgttaagccaatgcctggtcatagaggcat
gatcagcttcagccagaaaatactgctaacaaatgcaataaattctaatt
agatttctttgtcatctaggttgagacctttggtaataaaatatctacag
gaagtggcaaactgaaaattaaaggctaataaaagaaatctaatacaaaa
atttataaacactttcaaattaagtaatacttcaagcttttgaactccat
tcaattttataggtacaacattttcttagactcccgctgtcttcatacaa
ttggagaaagttgtattattagaaaaatatggctatcttgatcaatttag
gattataaaattcctcttttttaaaaaaagagggattgtcactcccacca
accatgttattagagttcctccaaactgtgcctcattagaattttatttg
tgtttatacttattgttcaattaagaaagaaagccttaaaccaatcaggc
cacagaaaactactttagagaagtgctaaggaacattttagatttttggg
acacagttacccaatcaaagtgtgaataatgtggaacacagacagatctc
tgttcagaatgaataacaggagaacatcccgaaatgcttcaaagcatgtc
acagaaaagggcagctgagaagtcgtgtgttgtgaaagggtcttcaaatg
tcctgagaagtccatcaacttcagaggtaagctactatgcaggctgacct
tccattgtgcctttgatggttgtcttcctcttccacccactataattgct
cattctcctgtaatcgtgtccaaattcctaccattttgctcatggttcaa
gaatgtttaagtaaaaaatatatacttatctgtttctacttgctaagata
tttgaaatgaagattttatgcttgcaagatttttattttcagtactccta
aaatttgaatcaaagtctatgatatatttgtagtggggaaatatttttag
cttttaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142777222_142777698
seq2: B6Ng01-022M18.b_42_519 (reverse)

seq1  -AAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  49
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  50

seq1  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  99
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCT  100

seq1  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  150

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  200

seq1  TGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTA  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  250

seq1  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  300

seq1  GGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAA  349
      |||||||||||| ||| ||||||||||||||||||||||||| |||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  350

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  400

seq1  AAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAA  449
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  450

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  477
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  478

seq1: chr1_47908737_47909747
seq2: B6Ng01-022M18.g_70_1078

seq1  GAATTCTCAAATTGTCTCTGTGTTAAGCCAATGCCTGGTCATAGAGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATTGTCTCTGTGTTAAGCCAATGCCTGGTCATAGAGGCAT  50

seq1  GATCAGCTTCAGCCAGAAAATACTGCTAACAAATGCAATAAATTCTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTTCAGCCAGAAAATACTGCTAACAAATGCAATAAATTCTAATT  100

seq1  AGATTTCTTTGTCATCTAGGTTGAGACCTTTGGTAATAAAATATCTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTTGTCATCTAGGTTGAGACCTTTGGTAATAAAATATCTACAG  150

seq1  GAAGTGGCAAACTGAAAATTAAAGGCTAATAAAAGAAATCTAATACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCAAACTGAAAATTAAAGGCTAATAAAAGAAATCTAATACAAAA  200

seq1  ATTTATAAACACTTTCAAATTAAGTAATACTTCAAGCTTTTGAACTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAACACTTTCAAATTAAGTAATACTTCAAGCTTTTGAACTCCAT  250

seq1  TCAATTTTATAGGTACAACATTTTCTTAGACTCCCGCTGTCTTCATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTATAGGTACAACATTTTCTTAGACTCCCGCTGTCTTCATACAA  300

seq1  TTGGAGAAAGTTGTATTATTAGAAAAATATGGCTATCTTGATCAATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAAGTTGTATTATTAGAAAAATATGGCTATCTTGATCAATTTAG  350

seq1  GATTATAAAATTCCTCTTTTTTAAAAAAAGAGGGATTGTCACTCCCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAAAATTCCTCTTTTTTAAAAAAAGAGGGATTGTCACTCCCACCA  400

seq1  ACCATGTTATTAGAGTTCCTCCAAACTGTGCCTCATTAGAATTTTATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTATTAGAGTTCCTCCAAACTGTGCCTCATTAGAATTTTATTTG  450

seq1  TGTTTATACTTATTGTTCAATTAAGAAAGAAAGCCTTAAACCAATCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATACTTATTGTTCAATTAAGAAAGAAAGCCTTAAACCAATCAGGC  500

seq1  CACAGAAAACTACTTTAGAGAAGTGCTAAGGAACATTTTAGATTTTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAACTACTTTAGAGAAGTGCTAAGGAACATTTTAGATTTTTGGG  550

seq1  ACACAGTTACCCAATCAAAGTGTGAATAATGTGGAACACAGACAGATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTACCCAATCAAAGTGTGAATAATGTGGAACACAGACAGATCTC  600

seq1  TGTTCAGAATGAATAACAGGAGAACATCCCGAAATGCTTCAAAGCATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAATGAATAACAGGAGAACATCCCGAAATGCTTCAAAGCATGTC  650

seq1  ACAGAAAAGGGCAGCTGAGAAGTCGTGTGTTGTGAAAGGGTCTTCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGGGCAGCTGAGAAGTCGTGTGTTGTGAAAGGGTCTTCAAATG  700

seq1  TCCTGAGAAGTCCATCAACTTCAGAGGTAAGCTACTATGCAGGCTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAAGTCCATCAACTTCAGAGGTAAGCTACTATGCAGGCTGACCT  750

seq1  TCCATTGTGCCTTTGATGGTTGTCTTCCTCTTCCACCCACTATAATTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTGCCTTTGATGGTTGTCTTCCTCTTCCACCCACTATAATTGCT  800

seq1  CATTCTCCTGTAATCGTGTCCAAATTCCTACCATTTTGCTCATGGTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCTGTAATCGTGTCCAAATTCCTACCATTTTGCTCATGGTTCAA  850

seq1  GAATGTTTAAGTAAAAAAATATATACTTATCTGTTTCTACTTGCTAAGAA  900
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  GAATGTTTAAGT-AAAAAATATATACTTATCTGTTTCTACTTGCTAAG-A  898

seq1  TATTTGAAATGAAGATTTTATGCTTGCAAGATTTTATATTTTCAGTACTC  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATTTGAAATGAAGATTTTATGCTTGCAAGATTTT-TATTTTCAGTACTC  947

seq1  TTAAAATTTGAATCAAAGTCTATGATATATTTGTTAGT-GGGAAATA-TT  998
       |||||||||||||||||||||||||||||||| |||| |||||||| ||
seq2  CTAAAATTTGAATCAAAGTCTATGATATATTTG-TAGTGGGGAAATATTT  996

seq1  TTAGCTTTTAAGT  1011
      |||||||||||||
seq2  TTAGCTTTTAAGT  1009