BAC Information

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BAC

Clone NameB6Ng01-022N24
Chromosome2 (Build37)
Map Location 16,666,087 - 16,829,115
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl, LOC100041319, LOC100041047
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022N24.bB6Ng01-022N24.g
ACCDH854957DH854958
length1,0861,001
definitionDH854957|Mus musculus domesticus DNA, BAC clone: B6Ng01-022N24, 5' end.DH854958|Mus musculus domesticus DNA, BAC clone: B6Ng01-022N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,666,087 - 16,667,180)(16,828,122 - 16,829,115)
sequence
gaattcagtattgagctgttgctggcaattcatggccatttctagaaaat
tactctttttttttttttttcaaggaaagaaaaacctataatccatgagg
cagaaagatactgcctcaaactgagtcttgtatttttaaattagatggca
agtttcactggttttaactcagggccagtatttttatacagctggatgcc
aaataaaatacaggtcacttaagcatatttgaatttcaaacaaaaatgag
tcaatttttgtttaaatttgtgggattaaacatagtttgaaaagtggctt
gtttatctgaaattcaaagttaactggtgcattttataattgtttgttat
gtcttgaaacttcagccttgtaactcactaagccaaaaaatactcaacac
aaagtaaggaaaatagtgaacgactatgtttgaaggtatgaaaaacaaaa
atagacccttccttttcccagtcaaaggtaaaggttaaagagccgatttg
gctatcaaagaaatgcgtgtttagttccctggttggtctgtgtgctaggt
acacagggttaaagttcatattcctccccttgtcttgagacagtgttctt
gctttaagttaccatccagaatcatgacccttaatcttcagggatgtctc
acagtgcagcagccatagtactgggggatgactaggaatgctgattccta
ggcctcccacacccagctgaaaatgggttcctttgagtttagtaggctca
taataaagcatgaacacttaaatgcaaagcttgcaaacatgcttaatgaa
agaaatcataaaatattttaagaaagaaaaagaaaagaaagagagggaga
gagacagagacagagagacagagagagaagtcagcctgttggagaccagt
gagcaccaggtgaggttgtactactgaaaagagactatggtcttaaaagg
ttttaaaagaataatcaacatctgttccatcagtggctggggtgggctct
cttaaaagtatgctaggctcctgtcagtaagatagcaaaattaataatta
attgcagggggtgggctcctatcatggcatggtctc
gaattcctggacaggaggaatttcttcttggacaaatataggtcaagtac
tcagaactctacctagcatgtgtagctagctctctatttctcatacattt
aacggtcatttcttatgttgataaaccaggaatgacttggtaaaaaggtc
tttatacaaatagccattttgcaaaggaattgataggtgatgtcttagtt
aaagtttctattactgtactgaaatatcatgaccaaaaatcaagttggga
agaaaaaaggttatttggtttatacttccatattgttctttattaaagga
agtcagggcagaaacacaaacagagtgaaatctaggaggcaggatctgat
tgcagaagtcataaagggatgttgttactggcttgcttcacatggcttgc
tcagcctgcattctcgtagaatcaaataccaccagaccagatatggcacc
actcaccatgggctgaactctcccctattggttatttattgagaaaatgc
cttacatctgggtctcatggagaaatttcccaaacagaagctccttcctc
tctagcttgtgtcatgttggcacacaaaaccagccagtacaggtgggata
tggaaataataggtaaatgctgatggaacttggagtctggaaacttgagt
tcaagtgaagattaacaacttaatagtttagggccattaaataatcagta
tactgtcttagctttgatatgtcaatatgtacatacaaaatatttgtttt
gcaaatatttaattaacatattacagatatgaaataaagcactgtataga
aaaggattttgttttatgcctagaaaatatatctttgcccagttaaagaa
caaaatctaactgggcacaggagtacccattagatcgcagcttctctatg
ttcctttaatatttagttttcctatggggtggaatatgggatttatttga
gactgagttacaatcacctttttccaccatcaagagggaagaaacctgat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16666087_16667180
seq2: B6Ng01-022N24.b_44_1129

seq1  GAATTCAGTATTGAGCTGTTGCTGGCAATTCATGGCCATTTCTAGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTGAGCTGTTGCTGGCAATTCATGGCCATTTCTAGAAAAT  50

seq1  TACTCTTTTTTTTTTTTTTTCAAGGAAAGAAAAACCTATAATCCATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTTTTTTTTTTTTTCAAGGAAAGAAAAACCTATAATCCATGAGG  100

seq1  CAGAAAGATACTGCCTCAAACTGAGTCTTGTATTTTTAAATTAGATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATACTGCCTCAAACTGAGTCTTGTATTTTTAAATTAGATGGCA  150

seq1  AGTTTCACTGGTTTTAACTCAGGGCCAGTATTTTTATACAGCTGGATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACTGGTTTTAACTCAGGGCCAGTATTTTTATACAGCTGGATGCC  200

seq1  AAATAAAATACAGGTCACTTAAGCATATTTGAATTTCAAACAAAAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATACAGGTCACTTAAGCATATTTGAATTTCAAACAAAAATGAG  250

seq1  TCAATTTTTGTTTAAATTTGTGGGATTAAACATAGTTTGAAAAGTGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTGTTTAAATTTGTGGGATTAAACATAGTTTGAAAAGTGGCTT  300

seq1  GTTTATCTGAAATTCAAAGTTAACTGGTGCATTTTATAATTGTTTGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTGAAATTCAAAGTTAACTGGTGCATTTTATAATTGTTTGTTAT  350

seq1  GTCTTGAAACTTCAGCCTTGTAACTCACTAAGCCAAAAAATACTCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAACTTCAGCCTTGTAACTCACTAAGCCAAAAAATACTCAACAC  400

seq1  AAAGTAAGGAAAATAGTGAACGACTATGTTTGAAGGTATGAAAAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGGAAAATAGTGAACGACTATGTTTGAAGGTATGAAAAACAAAA  450

seq1  ATAGACCCTTCCTTTTCCCAGTCAAAGGTAAAGGTTAAAGAGCCGATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCCTTCCTTTTCCCAGTCAAAGGTAAAGGTTAAAGAGCCGATTTG  500

seq1  GCTATCAAAGAAATGCGTGTTTAGTTCCCTGGTTGGTCTGTGTGCTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAAAGAAATGCGTGTTTAGTTCCCTGGTTGGTCTGTGTGCTAGGT  550

seq1  ACACAGGGTTAAAGTTCATATTCCTCCCCTTGTCTTGAGACAGTGTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGTTAAAGTTCATATTCCTCCCCTTGTCTTGAGACAGTGTTCTT  600

seq1  GCTTTAAGTTACCATCCAGAATCATGACCCTTAATCTTCAGGGATGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGTTACCATCCAGAATCATGACCCTTAATCTTCAGGGATGTCTC  650

seq1  ACAGTGCAGCAGCCATAGTACTGGGGGATGACTAGGAATGCTGATTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCAGCAGCCATAGTACTGGGGGATGACTAGGAATGCTGATTCCTA  700

seq1  GGCCTCCCACACCCAGCTGAAAATGGGTTCCTTTGAGTTTAGTAGGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCCACACCCAGCTGAAAATGGGTTCCTTTGAGTTTAGTAGGCTCA  750

seq1  TAATAAAGCATGAACACTTAAATGCAAAGCTTGCAAACATGCTTAATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGCATGAACACTTAAATGCAAAGCTTGCAAACATGCTTAATGAA  800

seq1  AGAAATCATAAAATATTTTAAGAAAGAAAAAGAAAAAGAAAGAGAGGGAG  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAAATCATAAAATATTTTAAGAAAGAAAAAG-AAAAGAAAGAGAGGGAG  849

seq1  AGAGACAGAGACAGAGAGACAGAGAGAGAAGTCAGCCTGTTGGAGACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGAGACAGAGAGAGAAGTCAGCCTGTTGGAGACCAG  899

seq1  TGAGCACCAGGTGAGGTTGTACTACTGAAAAGAGACTATGGTCTTAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCAGGTGAGGTTGTACTACTGAAAAGAGACTATGGTCTTAAAAG  949

seq1  GTTTTAAAAGAATATTCAACATCTGTTTCCATCAGTTGCTGGGTGTGGCC  1000
      |||||||||||||| |||||||||| |||||||||| |||||| |||| |
seq2  GTTTTAAAAGAATAATCAACATCTG-TTCCATCAGTGGCTGGG-GTGGGC  997

seq1  TCTCTATAACAGTTATGCTAGGCTCCTGTCAGTAAGTATAGCAGAAT--A  1048
      ||||| ||| || ||||||||||||||||||||||| |||||| |||  |
seq2  TCTCT-TAAAAG-TATGCTAGGCTCCTGTCAGTAAG-ATAGCAAAATTAA  1044

seq1  TAATTAATAGTGTCAGGGGTGGGCTCCCTATCATGGCATGGGTCTC  1094
      ||||||||  ||   |||||||||| ||||||||||||| ||||||
seq2  TAATTAAT--TGCAGGGGGTGGGCT-CCTATCATGGCAT-GGTCTC  1086

seq1: chr2_16828122_16829115
seq2: B6Ng01-022N24.g_67_1067 (reverse)

seq1  GATCAGGTTTC-TCCCTCTTGATGGTGG-AAAAGGTGA-TGTAACTCAGT  47
      ||||||||||| |||||||||||||||| ||||||||| |||||||||||
seq2  GATCAGGTTTCTTCCCTCTTGATGGTGGAAAAAGGTGATTGTAACTCAGT  50

seq1  CTCAAATAAAT-CCATATTTCACCCCATAGGAAAACTAAATATTAAGGGA  96
      ||||||||||| ||||||| |||||||||||||||||||||||||| |||
seq2  CTCAAATAAATCCCATATTCCACCCCATAGGAAAACTAAATATTAAAGGA  100

seq1  CATTAGAGAAGCTGCGATCTAATGGGTACTCCTGTG-CCAGTTAGATTTT  145
         ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATAGAGAAGCTGCGATCTAATGGGTACTCCTGTGCCCAGTTAGATTTT  150

seq1  GTTCTTTAACTGGGCAAAGATATATTTTCTAGGCATAAAACAAAATCCTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTAACTGGGCAAAGATATATTTTCTAGGCATAAAACAAAATCCTT  200

seq1  TTCTATACAGTGCTTTATTTCATATCTGTAATATGTTAATTAAATATTTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACAGTGCTTTATTTCATATCTGTAATATGTTAATTAAATATTTG  250

seq1  CAAA--CAATATTTTGTATGTACATATTGACATATCAAAGCTAAGACAGT  293
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAATATTTTGTATGTACATATTGACATATCAAAGCTAAGACAGT  300

seq1  ATACTGATTATTTAATGGCCCTAAACTATTAAGTTGTTAATCTTCACTTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATTATTTAATGGCCCTAAACTATTAAGTTGTTAATCTTCACTTG  350

seq1  AACTCAAGTTTCCAGACTCCAAGTTCCATCAGCATTTACCTATTATTTCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGTTTCCAGACTCCAAGTTCCATCAGCATTTACCTATTATTTCC  400

seq1  ATATCCCACCTGTACTGGCTGGTTTTGTGTGCCAACATGACACAAGCTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCACCTGTACTGGCTGGTTTTGTGTGCCAACATGACACAAGCTAG  450

seq1  AGAGGAAGGAGCTTCTGTTTGGGAAATTTCTCCATGAGACCCAGATGTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGAGCTTCTGTTTGGGAAATTTCTCCATGAGACCCAGATGTAA  500

seq1  GGCATTTTCTCAATAAATAACCAATAGGGGAGAGTTCAGCCCATGGTGAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTCTCAATAAATAACCAATAGGGGAGAGTTCAGCCCATGGTGAG  550

seq1  TGGTGCCATATCTGGTCTGGTGGTATTTGATTCTACGAGAATGCAGGCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCATATCTGGTCTGGTGGTATTTGATTCTACGAGAATGCAGGCTG  600

seq1  AGCAAGCCATGTGAAGCAAGCCAGTAACAACATCCCTTTATGACTTCTGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCATGTGAAGCAAGCCAGTAACAACATCCCTTTATGACTTCTGC  650

seq1  AATCAGATCCTGCCTCCTAGATTTCACTCTGTTTGTGTTTCTGCCCTGAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATCCTGCCTCCTAGATTTCACTCTGTTTGTGTTTCTGCCCTGAC  700

seq1  TTCCTTTAATAAAGAACAATATGGAAGTATAAACCAAATAACCTTTTTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAATAAAGAACAATATGGAAGTATAAACCAAATAACCTTTTTTC  750

seq1  TTCCCAACTTGATTTTTGGTCATGATATTTCAGTACAGTAATAGAAACTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACTTGATTTTTGGTCATGATATTTCAGTACAGTAATAGAAACTT  800

seq1  TAACTAAGACATCACCTATCAATTCCTTTGCAAAATGGCTATTTGTATAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGACATCACCTATCAATTCCTTTGCAAAATGGCTATTTGTATAA  850

seq1  AGACCTTTTTACCAAGTCATTCCTGGTTTATCAACATAAGAAATGACCGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTTTTACCAAGTCATTCCTGGTTTATCAACATAAGAAATGACCGT  900

seq1  TAAATGTATGAGAAATAGAGAGCTAGCTACACATGCTAGGTAGAGTTCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTATGAGAAATAGAGAGCTAGCTACACATGCTAGGTAGAGTTCTG  950

seq1  AGTACTTGACCTATATTTGTCCAAGAAGAAATTCCTCCTGTCCAGGAATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGACCTATATTTGTCCAAGAAGAAATTCCTCCTGTCCAGGAATT  1000

seq1  C  994
      |
seq2  C  1001