BAC Information

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BAC

Clone NameB6Ng01-024B09
Chromosome2 (Build37)6 (Build37)
Map Location 142,776,635 - 142,777,16668,889,664 - 68,890,797
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024B09.bB6Ng01-024B09.g
ACCDH855823DH855824
length9701,125
definitionDH855823|Mus musculus domesticus DNA, BAC clone: B6Ng01-024B09, 5' end.DH855824|Mus musculus domesticus DNA, BAC clone: B6Ng01-024B09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,635 - 142,777,166)(68,889,664 - 68,890,797)
sequence
gaattctttatatatgttggatattagtcccctatctgatttaggatagg
taaagatactttcccaatctgttggtggtctttttgtcttattgacggtg
tcttttgccttgcagatgctttggaaaagtttcatgaggtcccatttgtc
aattctcggtcttatagcacaagccattgctgttctattcaggaattttt
cccctgtgcccatatcttcaaagcttttccccactttctccactataagt
ttcagtgtctctggttttatgtgaagttccttgatccacttagatttgac
cttagtacaaggagataggtatggatcgattcgcatttttctacatgata
acaaccagttgtgccagcaccatttgttgaaaatgctgtctttcttccac
tggatggttttagctcccttgtcgaagatcaagtgaccataggtgtgtgc
attcatttctgggtcttcaattctattccattggtctacttgtctgtcag
tataccagtaccatgcagtttttaatcacaattgctccgtagtaaagctt
taggtcaggcatggtgattccaccagaggttcttttatccttgagaagag
tttttctatcctaggttttttgttattccagatgaatttacagattgctc
tttctaattcatagaagaattgagttggaattttgatggggattgcattg
aatctgtagattgcttttggcaagatagccatttttacaatgttgattct
gccaatccatgagcatgggagatctttccatcttctgagatcttctttaa
tttctttcttcagagatttgaagtttttatcctatagatctttcacttcc
ttagttagagtcacgccagatattttatattatttgtgactactgagaaa
ggtgttgtttccctaatttctggccattgacttgttgagttaattttata
tccagctacttcactgaagc
gaattcatttgcttctttctaatcattgctaatttgaactgctgggaagt
aattctgtcttgattaaccatatatatttgttttgtgtttccctttacag
gcatgatatgtgacatccagatgacacaatcttcatcctccttttctgta
tctctaggagacagagtcaccattacttgcaaggcaagtgaggacatata
taatcggttagcctggtatcagcagaaaccaggaaatgctcctaggctct
taatatctggtgcaaccagtttggaaactggggttccttcaagattcagt
ggcagtggatctggaaaggattacactctcagcattaccagtcttcagac
tgaagatgttgctacttattactgtcaacagtattggagtactcctccca
cagtgatacaagccatgacataaaccaccaaagtccagctggccttctca
tagcttccatctgctaatacatttttattctcaaatatagtcaggctatg
atattaactgtgcagttaggttacagctacctcagaggctcttttgttcc
ttagtctctttattcctatttagtctcaacaacaaaatttttaaagaaat
tctctgaatttttttttaagaacagtatgttgggagtcatatagcaaaaa
tgagaaagctctacagacattcttagaagctattttgatatgcagaattg
gaattagaaagacagtctctggatggtttgtcaggtgactcttttgaggc
caaaatattctctaagtatcatcttttgaataattgattctcagcttttt
acatagttgtggatcttggacacttttatatatgtactagctgaagaagc
tgcaggcagatccttgtgggtgcattgattacagccacttaaacttctgt
catctactttcatcatactgtgttccctgagtatgtctttttcacttcat
gagctggggtagctgaagacttgagccaaatagtacatcatttccattct
tttcactatgagatttttttcacagcaatggagtatcatcaatgcaaggt
gcttatatttaattgaagctgatgataaaagtactgcaaaattatagttc
tttgagaggcatatgcctattcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776635_142777166
seq2: B6Ng01-024B09.b_56_591 (reverse)

seq1  CAGAGCAATTGTGA-TAAAAACTGCATGGTACTGGTATAGAGACAGACAA  49
      | |||||||||||| ||||||||||||||||||||||||  |||||||||
seq2  CGGAGCAATTGTGATTAAAAACTGCATGGTACTGGTATACTGACAGACAA  50

seq1  GTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTA  99
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  GTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAATGCACACACCTA  100

seq1  TGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAG  149
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAG  150

seq1  ACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGA  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGA  200

seq1  AGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAA  249
      | |||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAATGCGAATCGATCCATACCTATCTCCTTGTACTAAGGTCAAATCTAA  250

seq1  GTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGTGG  300

seq1  AGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTG  349
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  AGAAAGTGGGGAAAAGCTTTGAAGATATGGGCACAGGGGAAAAATTCCTG  350

seq1  AACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGA  399
      || ||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  AATAGAACAGCAATGGCTTGTGCTATAAGACCGAGAATTGACAAATGGGA  400

seq1  CCTAATGAAAC---TCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  446
      ||| |||||||   |||||||  |||||||||||||||||||||||||||
seq2  CCTCATGAAACTTTTCCAAAGCATCTGCAAGGCAAAAGACACCGTCAATA  450

seq1  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  496
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGACAAAAAGACCACCAACAGATTGGGAAAGTATCTTTACCTATCCTAAA  500

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAA  532
      ||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGGGGACTAATATCCAACATATATAAAGAA  536

seq1: chr6_68889664_68890797
seq2: B6Ng01-024B09.g_70_1194

seq1  GAATTCATTTGCTTCTTTCTAATCATTGCTAATTTGAACTGCTGGGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCTTCTTTCTAATCATTGCTAATTTGAACTGCTGGGAAGT  50

seq1  AATTCTGTCTTGATTAACCATATATATTTGTTTTGTGTTTCCCTTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTCTTGATTAACCATATATATTTGTTTTGTGTTTCCCTTTACAG  100

seq1  GCATGATATGTGACATCCAGATGACACAATCTTCATCCTCCTTTTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATATGTGACATCCAGATGACACAATCTTCATCCTCCTTTTCTGTA  150

seq1  TCTCTAGGAGACAGAGTCACCATTACTTGCAAGGCAAGTGAGGACATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGGAGACAGAGTCACCATTACTTGCAAGGCAAGTGAGGACATATA  200

seq1  TAATCGGTTAGCCTGGTATCAGCAGAAACCAGGAAATGCTCCTAGGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGGTTAGCCTGGTATCAGCAGAAACCAGGAAATGCTCCTAGGCTCT  250

seq1  TAATATCTGGTGCAACCAGTTTGGAAACTGGGGTTCCTTCAAGATTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTGGTGCAACCAGTTTGGAAACTGGGGTTCCTTCAAGATTCAGT  300

seq1  GGCAGTGGATCTGGAAAGGATTACACTCTCAGCATTACCAGTCTTCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGATCTGGAAAGGATTACACTCTCAGCATTACCAGTCTTCAGAC  350

seq1  TGAAGATGTTGCTACTTATTACTGTCAACAGTATTGGAGTACTCCTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTTGCTACTTATTACTGTCAACAGTATTGGAGTACTCCTCCCA  400

seq1  CAGTGATACAAGCCATGACATAAACCACCAAAGTCCAGCTGGCCTTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATACAAGCCATGACATAAACCACCAAAGTCCAGCTGGCCTTCTCA  450

seq1  TAGCTTCCATCTGCTAATACATTTTTATTCTCAAATATAGTCAGGCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCATCTGCTAATACATTTTTATTCTCAAATATAGTCAGGCTATG  500

seq1  ATATTAACTGTGCAGTTAGGTTACAGCTACCTCAGAGGCTCTTTTGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACTGTGCAGTTAGGTTACAGCTACCTCAGAGGCTCTTTTGTTCC  550

seq1  TTAGTCTCTTTATTCCTATTTAGTCTCAACAACAAAATTTTTAAAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCTTTATTCCTATTTAGTCTCAACAACAAAATTTTTAAAGAAAT  600

seq1  TCTCTGAATTTTTTTTTAAGAACAGTATGTTGGGAGTCATATAGCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAATTTTTTTTTAAGAACAGTATGTTGGGAGTCATATAGCAAAAA  650

seq1  TGAGAAAGCTCTACAGACATTCTTAGAAGCTATTTTGATATGCAGAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGCTCTACAGACATTCTTAGAAGCTATTTTGATATGCAGAATTG  700

seq1  GAATTAGAAAGACAGTCTCTGGATGGTTTGTCAGGTGACTCTTTTGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGAAAGACAGTCTCTGGATGGTTTGTCAGGTGACTCTTTTGAGGC  750

seq1  CAAAATATTCTCTAAGTATCATCTTTTGAATAATTGATTCTCAGCTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTCTCTAAGTATCATCTTTTGAATAATTGATTCTCAGCTTTTT  800

seq1  ACAATAGTTGTGGATCTTGGACACTTTTATATATGTACTAGGCTGAAGAA  850
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AC-ATAGTTGTGGATCTTGGACACTTTTATATATGTACTA-GCTGAAGAA  848

seq1  GCTGCAGGCAGATCCTTGTGGGTGCATTGATTACAGCCACTTAAACTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGCAGATCCTTGTGGGTGCATTGATTACAGCCACTTAAACTTCT  898

seq1  GTCATCTACTTTCATCATACTGTGTTCCCTGAGTATGTCTTTTTTCACTT  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTCATCTACTTTCATCATACTGTGTTCCCTGAGTATGTC-TTTTTCACTT  947

seq1  CATGAGCTGGGGTAGCTGAAGACATGAGCCAAAATAGTACATCATTTCCA  1000
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CATGAGCTGGGGTAGCTGAAGACTTGAGCC-AAATAGTACATCATTTCCA  996

seq1  ATCTTTCACCTATGAGATTTTTTTCACAGCAATGGAGTAGTCATGAATGC  1050
       |||||   |||||||||||||||||||||||||||||| |||| |||||
seq2  TTCTTTTCACTATGAGATTTTTTTCACAGCAATGGAGTA-TCATCAATGC  1045

seq1  AAGGTGCTTATTATTTAAATGAAGTTGATGATAGAAGTAGTGGAAAATTA  1100
      |||||||||| ||||||| ||||| |||||||| ||||| || |||||||
seq2  AAGGTGCTTA-TATTTAATTGAAGCTGATGATAAAAGTACTGCAAAATTA  1094

seq1  TAGTTCTTTTTAGAGTGCATATGCCCTATTCAGA  1134
      |||||| ||| |||| ||||||| ||||||||||
seq2  TAGTTC-TTTGAGAG-GCATATG-CCTATTCAGA  1125