BAC Information

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BAC

Clone NameB6Ng01-024M06
Chromosome2 (Build37)
Map Location 154,828,809 - 154,829,884
singlet/doubletsinglet
Overlap genenone
Upstream genePsp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
Downstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024M06.bB6Ng01-024M06.g
ACCDH856299DH856300
length1,058741
definitionDH856299|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M06, 5' end.DH856300|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaatactaaacagtagcgttgaaccacaacaaccttgaacatct
ccagtaagttcacaagtttagaagacccatgtaaaatctggtggtagtgt
gttcctattcattaggcattgctaaatctttcagcaatttatgagccagt
taggtctataaaaacaaggaaatggctgtggtgggataaactgtcatttg
gtgcctctaatagatggccccttattcccgcagtccctgagatggcatga
aaccttttcctatgggctttctccccatcattgaaaacagacattttctt
ctactctcagcttcgactcacactctgtgaagcaccaggttggagaatcc
tgaggcaggttccccagtctctccacgtaccccttgtttcttagacaaac
tgagactgtcaattccatgatgcctctggagttcatggcctcgggggaga
tggagcagaaatgaagtcctgggacttggtgcagagctgaagtcctggga
ttggcgttgatgcccagtttagcacctggggatcacagcttggccctgac
tcatggtgtgactgcaggtgatcccaatcatttctgctcctctctttagt
tgaaaaaaaattttttttttcaagacaagattttactgtgtagccctggc
tgtcctaaaactcactctatagaccaggttggccttgaactcacagagat
ccatctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgc
ctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcct
ctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctgt
gcagtctgggattaaaggtatataccaccactgcctggctttcagttgaa
atatttgcctgcttcttcttggacaaggatgaacttctaaattaaaacaa
atttactttttctgtttccttatagataagtccagctctatatttatgta
gctaagagcatattagtaatataatcattaacaagactatctgtttgata
tgttagta
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggtgaaagccagc
gtactgttcaacctcagggcagtcggtttcaaggtccgccctatgcggag
cccccgccctgcgtagtgcgtcagcaatgcgcagagaggcagtgcgcaga
gagatgcgcagagaggcaatgcgcagagagatgcgcagagaggcagtgcg
cagagaggcagtgcgcagagaggcagtgcgcagactcattcattcccaga
gaggaacaaaggaaaatacaacaggcatttccagtctttgaaggagccga
gggtgggcgtgtccacgctccggtagaatacgtacagattaaagaaattg
ccgagtcggttcgtaaatacggaaccaatgctaattttaccttggtgcag
ttagacaggctcgctggcatggcactaactcctgctgactggcaaacggt
tgtaaaaagccgctctccctagtatgggcaaatatatggaatgggagagc
gctttggcacgaagctgcacaagcccaggcccgagcaaacgcagctgctt
ttgactccagagcagagagattgggactttttgacttgttaatggggcag
ggaagcttattctgctgatcaaaacaaactaccatttgggggagcttatt
gcccagattttcttccccggttttaagggcctggaaggcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154828809_154829884
seq2: B6Ng01-024M06.b_42_1099

seq1  GAATTCAAATACTAAACAGTAGCGTTGAACCACAACAACCTTGAACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATACTAAACAGTAGCGTTGAACCACAACAACCTTGAACATCT  50

seq1  CCAGTAAGTTCACAAGTTTAGAAGACCCATGTAAAATCTGGTGGTAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAGTTCACAAGTTTAGAAGACCCATGTAAAATCTGGTGGTAGTGT  100

seq1  GTTCCTATTCATTAGGCATTGCTAAATCTTTCAGCAATTTATGAGCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATTCATTAGGCATTGCTAAATCTTTCAGCAATTTATGAGCCAGT  150

seq1  TAGGTCTATAAAAACAAGGAAATGGCTGTGGTGGGATAAACTGTCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTATAAAAACAAGGAAATGGCTGTGGTGGGATAAACTGTCATTTG  200

seq1  GTGCCTCTAATAGATGGCCCCTTATTCCCGCAGTCCCTGAGATGGCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTAATAGATGGCCCCTTATTCCCGCAGTCCCTGAGATGGCATGA  250

seq1  AACCTTTTCCTATGGGCTTTCTCCCCATCATTGAAAACAGACATTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTCCTATGGGCTTTCTCCCCATCATTGAAAACAGACATTTTCTT  300

seq1  CTACTCTCAGCTTCGACTCACACTCTGTGAAGCACCAGGTTGGAGAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTCAGCTTCGACTCACACTCTGTGAAGCACCAGGTTGGAGAATCC  350

seq1  TGAGGCAGGTTCCCCAGTCTCTCCACGTACCCCTTGTTTCTTAGACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGTTCCCCAGTCTCTCCACGTACCCCTTGTTTCTTAGACAAAC  400

seq1  TGAGACTGTCAATTCCATGATGCCTCTGGAGTTCATGGCCTCGGGGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGTCAATTCCATGATGCCTCTGGAGTTCATGGCCTCGGGGGAGA  450

seq1  TGGAGCAGAAATGAAGTCCTGGGACTTGGTGCAGAGCTGAAGTCCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGAAATGAAGTCCTGGGACTTGGTGCAGAGCTGAAGTCCTGGGA  500

seq1  TTGGCGTTGATGCCCAGTTTAGCACCTGGGGATCACAGCTTGGCCCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGTTGATGCCCAGTTTAGCACCTGGGGATCACAGCTTGGCCCTGAC  550

seq1  TCATGGTGTGACTGCAGGTGATCCCAATCATTTCTGCTCCTCTCTTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTGACTGCAGGTGATCCCAATCATTTCTGCTCCTCTCTTTAGT  600

seq1  TGAAAAAAAATTTTTTTTTTCAAGACAAGATTTTACTGTGTAGCCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAATTTTTTTTTTCAAGACAAGATTTTACTGTGTAGCCCTGGC  650

seq1  TGTCCTAAAACTCACTCTATAGACCAGGTTGGCCTTGAACTCACAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAAAACTCACTCTATAGACCAGGTTGGCCTTGAACTCACAGAGAT  700

seq1  CCATCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGC  750

seq1  CTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCT  800

seq1  CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTGT  850

seq1  GCAGTGCTGGGATTAAAGGTATATACCACCACTGCCTGGCTTTTCAGTTG  900
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  GCAGT-CTGGGATTAAAGGTATATACCACCACTGCCTGGC-TTTCAGTTG  898

seq1  AAATATTTGCCTGCTTCTTCTTGGACAAAGGATGAACTTCTTAAAATTAA  950
      |||||||||||||||||||||||||| ||||||||||||||  |||||||
seq2  AAATATTTGCCTGCTTCTTCTTGGAC-AAGGATGAACTTCT--AAATTAA  945

seq1  AACCAAAATTTACTTTTTCTGTTTTCCTTATAGGATAAGTTCAAGGCTCT  1000
      |||  |||||||||||||||| |||||||||| ||||||| ||  |||||
seq2  AAC--AAATTTACTTTTTCTG-TTTCCTTATA-GATAAGTCCA--GCTCT  989

seq1  ATATTTAATGTAGCTAAGAGCATATTAGTATTATTAATCATTTAAACAAG  1050
      |||||| ||||||||||||||||||||||| || ||||||||  ||||||
seq2  ATATTT-ATGTAGCTAAGAGCATATTAGTAATA-TAATCATT--AACAAG  1035

seq1  ACTATCTGTTTTGATTATGTTTAGTA  1076
      |||||||| ||||| |||| ||||||
seq2  ACTATCTG-TTTGA-TATG-TTAGTA  1058