BAC Information

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BAC

Clone NameB6Ng01-024P16
Chromosome2 (Build37)10 (Build37)
Map Location 148,460,928 - 148,461,38287,322,686 - 87,323,502
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93
Downstream geneNxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024P16.bB6Ng01-024P16.g
ACCDH856456DH856457
length782824
definitionDH856456|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P16, 5' end.DH856457|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(148,460,928 - 148,461,382)(87,322,686 - 87,323,502)
sequence
gaattctggccgaggtcttgccagtgatggaaagaaacggtatgttcttg
cagctgccagaagttatgctattctagctgatggcaactttttttgtctt
gaaaccctttctgtattgtgacttgtgaccacatgagtgattgctgagaa
agcagagagcatgctaattcattgaacagctttttatccacagataactt
caagttgtctggatacctcatagatgcttttgataatgacattccagaga
atgatgtagaagataaacctggaacattggggctttactattgttcatta
ttttagttgtctttcactctttacaccctcagtgctgttactctgggaag
tcctagcagctttctttagtacaaagggggcaaaagaactgtagttcttt
tcttggagatattttttgttagtgtgtgtatctttttttttttaaaggta
ttttcctcatttacatttccaatgctatcccaaaagtcccccctacccac
tcccaccttttggccctggcgttcccctgtactggggcatataaagcttg
caagtccaatgggcctctctttccagtgatggccaactaggccatctttt
gatacatatgcagctagagtcaagagctccggggtactggttagttcata
atgttgttccacctatagggttgcagatccctttagctccttgggtactt
tctctagctcctccactggggccctgtgatccatccaatagctgactgtg
atcatccacttctgtgtttgctaggccccggc
gaattctttgcacttctgcccagaaagtcaaagttaggggaagtttaatt
tgcttttctgtaaaagctcttagacaacttgctgtctttgcatattcaga
aattttaaacagatacaggctgtgctcagaaagcaggagcttactggcgg
ctgcttgtccaacttttctctttggaaggggactttcgtgactgagctgg
ggtttgaattttggtttaaggctctgctcttagactcaccgcgcggcgcg
gcaaggcaaagcctctttaggtgaatcggctgctgcttgcccctgctgct
gctgtgctgcctctgtcacttgcctctggctctgtcgctcgcccctgccg
ctgctgctgctgctgctgctgctgctgctgctgctgctgctgccgtttgc
ccctgccgctgtctatgttctgccttctccttttgatcactggccctact
tcaagtttccattctcagcaaaattatatccttccagacttgtgtttttt
caatttgcaagcacttctaagccgctgtcaccggctccttggaggcagtt
gccggagggcttaattcataaaagatcccagtcaaagagtgcagcgggtt
ttttttttgtgctgcattcaaatgcttcattcgctatgagtttttcttag
gcaaagtaagtggcttgggactttcgggagacaaccttgtcaagcacctt
aattgtgccgtccctcgcgctgccagcaagcttcagccacctttacagga
gtgaagtcagcgttcatatacgctgtgtggtctggcagctgggattgtgt
gtcccaaagggattgtggaatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_148460928_148461382
seq2: B6Ng01-024P16.b_470_812 (reverse)

seq1  GCCGGGGCCTAGCAAACACAGTCATATATTAGCATATATATATATATATA  50
      |||||||||||||||||||||   |  ||                     
seq2  GCCGGGGCCTAGCAAACACAGAAGTGGAT---------------------  29

seq1  TATATATATATATATATATATATATATATATATATATATATCACAGTCAG  100
                                             |||||||||||
seq2  --------------------------------------GATCACAGTCAG  41

seq1  CTATTGGATGAATCACAGGACCCCCAATGGAAGAGCTAGAGAAAGTACCC  150
      |||||||||| ||||||||  ||||| |||| ||||||||||||||||||
seq2  CTATTGGATGGATCACAGG-GCCCCAGTGGAGGAGCTAGAGAAAGTACCC  90

seq1  AAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACT  200
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  AAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACT  140

seq1  AACCAGTACCCCCACACACACCCCCAGAGCTCATGTCTCTAGCTGCATAT  250
      ||||||||             |||| |||||| || ||||||||||||||
seq2  AACCAGTA-------------CCCCGGAGCTCTTGACTCTAGCTGCATAT  177

seq1  GTGTCATAAGATAGCCTAGTCGGCCATCATTGGAAAGAGAGTCCCATTGG  300
      || ||| ||||| ||||||| |||||||| ||||||||||| ||||||||
seq2  GTATCAAAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAGGCCCATTGG  227

seq1  TATTGCAAACTTTATATGCTTCAGTACAGGGGAACGCCAGGGCCAAGAAG  350
        |||||| ||||||||||  ||||||||||||||||||||||||| | |
seq2  ACTTGCAAGCTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAGG  277

seq1  TGGGAGTGGGTAGGTAGGGGAGTTTTTTTTGGGGGGGGGAGGGTATGGGG  400
      |||||||||||||                                 ||||
seq2  TGGGAGTGGGTAG---------------------------------GGGG  294

seq1  GACTTTTGGGATAGCATTGGAAATGTAAATGAAGAAAATACATAATTTTT  450
      |||||||||||||||||||||||||||||||| ||||||||       ||
seq2  GACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATAC------CTT  338

seq1  TAAAA  455
      |||||
seq2  TAAAA  343

seq1: chr10_87322686_87323502
seq2: B6Ng01-024P16.g_71_894

seq1  GAATTCTTTGCACTTCTGCCCAGAAAGTCAAAGTTAGGGGAAGTTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCACTTCTGCCCAGAAAGTCAAAGTTAGGGGAAGTTTAATT  50

seq1  TGCTTTTCTGTAAAAGCTCTTAGACAACTTGCTGTCTTTGCATATTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTGTAAAAGCTCTTAGACAACTTGCTGTCTTTGCATATTCAGA  100

seq1  AATTTTAAACAGATACAGGCTGTGCTCAGAAAGCAGGAGCTTACTGGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAACAGATACAGGCTGTGCTCAGAAAGCAGGAGCTTACTGGCGG  150

seq1  CTGCTTGTCCAACTTTTCTCTTTGGAAGGGGACTTTCGTGACTGAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTCCAACTTTTCTCTTTGGAAGGGGACTTTCGTGACTGAGCTGG  200

seq1  GGTTTGAATTTTGGTTTAAGGCTCTGCTCTTAGACTCACCGCGCGGCGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAATTTTGGTTTAAGGCTCTGCTCTTAGACTCACCGCGCGGCGCG  250

seq1  GCAAGGCAAAGCCTCTTTAGGTGAATCGGCTGCTGCTTGCCCCTGCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAAAGCCTCTTTAGGTGAATCGGCTGCTGCTTGCCCCTGCTGCT  300

seq1  GCTGTGCTGCCTCTGTCACTTGCCTCTGGCTCTGTCGCTCGCCCCTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTGCCTCTGTCACTTGCCTCTGGCTCTGTCGCTCGCCCCTGCCG  350

seq1  CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGTTTGC  400

seq1  CCCTGCCGCTGTCTATGTTCTGCCTTCTCCTTTTGATCACTGGCCCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCGCTGTCTATGTTCTGCCTTCTCCTTTTGATCACTGGCCCTACT  450

seq1  TCAAGTTTCCATTCTCAGCAAAATTATATCCTTCCAGACTTGTGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTCCATTCTCAGCAAAATTATATCCTTCCAGACTTGTGTTTTTT  500

seq1  CAATTTGCAAGCACTTCTAAGCCGCTGTCACCGGCTCCTTGGAGGCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGCAAGCACTTCTAAGCCGCTGTCACCGGCTCCTTGGAGGCAGTT  550

seq1  GCCGGAGGGCTTAATTCATAAAAGATCCCAGTCAAAGAGTGCAGCGGG-T  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCGGAGGGCTTAATTCATAAAAGATCCCAGTCAAAGAGTGCAGCGGGTT  600

seq1  TTTTTTTTGTGCTGCATTCAAATGCTTCA-TCGCTATGAGTTTTTCTTAG  648
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTTTTGTGCTGCATTCAAATGCTTCATTCGCTATGAGTTTTTCTTAG  650

seq1  GC-AAGTAAGTGGCTTGGGAC-TTCGGGAGACAACCTTGTCAAGCACC-T  695
      || |||||||||||||||||| |||||||||||||||||||||||||| |
seq2  GCAAAGTAAGTGGCTTGGGACTTTCGGGAGACAACCTTGTCAAGCACCTT  700

seq1  AATTGTGCCGT-CCTCGCGCTGCCAGCAAGCTTCAGCCACC-TTACAGGA  743
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  AATTGTGCCGTCCCTCGCGCTGCCAGCAAGCTTCAGCCACCTTTACAGGA  750

seq1  GTGAAGTCAGCGTTCATATACGCTGTGTGGTCTGGCAGCTGGGATTGTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCAGCGTTCATATACGCTGTGTGGTCTGGCAGCTGGGATTGTGT  800

seq1  GTCCCAAAGGGATTGTGGAATGTT  817
      ||||||||||||||||||||||||
seq2  GTCCCAAAGGGATTGTGGAATGTT  824