BAC Information

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BAC

Clone NameB6Ng01-025A21
Chromosome2 (Build37)
Map Location 51,868,893 - 51,955,993
singlet/doubletdoublet
Overlap geneTnfaip6, Rif1
Upstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi
Downstream geneNeb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025A21.bB6Ng01-025A21.g
ACCDH856511DH856512
length849456
definitionDH856511|Mus musculus domesticus DNA, BAC clone: B6Ng01-025A21, 5' end.DH856512|Mus musculus domesticus DNA, BAC clone: B6Ng01-025A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,955,041 - 51,955,993)(51,868,893 - 51,869,354)
sequence
gaattcctctttgtggcaagttataggccagcgtgggctatttgtctctg
gggcaaggaaaaaaaaatacaaaatcaaaagtgtgggtcaggggacattc
acagtctctcatggcagccacaatacaccatttattacttaataggtaac
tttacaatggaaacttgacacaaaccaaccaacagtatagattaatgcct
gaaatgaatgaagtatgaatttaaaaagcaccactacatttgttctgtgg
tatttctattacaaataaaaaacccaaaatactaagatgaggaaatatgg
caagttcaaatgaaagactaaacaaacaaacaaacaaacaaacaaacaaa
caaacaaatgctggccaagtgcctcatctgtaaagaacttaatactaagg
aaacattccaagcagtttaaactgatgtctgtatcatgctttcaaacaga
aaacataacacacacacacacacacacacacacacacacacacacacaca
cacacagacacacacacacacacagacacacacatacacacacacacaca
cacacacacacacatacacacacacacacacacatacatacacacacaca
cacacacacagacacacacatacacacacacacacacacacacacacaga
cacacacatacacacacacacacacacacacacagacacacacagacaca
cacatacacacacacacacagacacacacacacacatacacacacaaaac
acacacacacacacacacacatacacacacactcagacacacacatacac
acacactcacacacatcacacacacacacagactcacacatacacacac
tgggtgtgacagtgcagtttgttcacgtttctgtgctacagattgacagc
aaggccttccttggtcatgccgcagaggcatgtaaccactgcactataca
tgcccaacctgggacaggttgaacaaagaagcagattagcataaggtcat
ctgcactctggcctgactcggttctctggactagtgcagctctctccctc
agagtctctctctccatctgcccatctgctttgggaaatctcctggcaga
gagcacagagagcctcacatgcttgccttccgcctgcacagcctccaacc
cggtggaaggggaaagccaggcgtgggaaggaggagaggaaattcccttt
ggaaaacccaaaaggtcttactgcctcttggatttttttttttttgctct
ttatttcctatcaatgtgtgcgtgagtgtgtgtgtgtgtgtgtgtgtgag
agagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51955041_51955993
seq2: B6Ng01-025A21.b_48_896 (reverse)

seq1  GTGTGTGTATGTGTGTGTCTGTGTGTGTGTGTGTGTGTATGTATGTGTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTCTGTGTGTGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTGTGTGTGTATGTGTGTGTCTGTGTGTGTGTGTAGGTGTGTGTGTGT  150
          ||||||||||||||| |||||||||||||||| | |||||||| ||
seq2  ----GTGTGTGTATGTGTGAGTCTGTGTGTGTGTGT-GATGTGTGTGAGT  45

seq1  GTGTGTGTATGTGTGTGTCTGTGTGTGTGTGTATGTGTGTGTGTGTGTGT  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTGTGTGTCTGAGTGTGTGTGTATGTGTGTGTGTGTGTGT  95

seq1  GTGTG-TTTGTGTGTGTATGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTA  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTGTGTGTGTATGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTA  145

seq1  TGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTG  195

seq1  TGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTCTGTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTCTGTGTG  245

seq1  TGTGTGTGTGTGTGTATGTATGTGTGTGTGTGTGTGTGTATGTGTGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTATGTATGTGTGTGTGTGTGTGTGTATGTGTGTGTG  295

seq1  TGTGTGTGTGTGTGTGTGTATGTGTGTGTCTGTGTGTGTGTGTGTGTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTATGTGTGTGTCTGTGTGTGTGTGTGTGTCTG  345

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAT  395

seq1  GTTTTCTGTTTGAAAGCATGATACAGACATCAGTTTAAACTGCTTGGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTTTGAAAGCATGATACAGACATCAGTTTAAACTGCTTGGAAT  445

seq1  GTTTCCTTAGTATTAAGTTCTTTACAGATGAGGCACTTGGCCAGCATTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTAGTATTAAGTTCTTTACAGATGAGGCACTTGGCCAGCATTTG  495

seq1  TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAGTCTTTCATTTGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAGTCTTTCATTTGAA  545

seq1  CTTGCCATATTTCCTCATCTTAGTATTTTGGGTTTTTTATTTGTAATAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATATTTCCTCATCTTAGTATTTTGGGTTTTTTATTTGTAATAGA  595

seq1  AATACCACAGAACAAATGTAGTGGTGCTTTTTAAATTCATACTTCATTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACAGAACAAATGTAGTGGTGCTTTTTAAATTCATACTTCATTCA  645

seq1  TTTCAGGCATTAATCTATACTGTTGGTTGGTTTGTGTCAAGTTTCCATTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCATTAATCTATACTGTTGGTTGGTTTGTGTCAAGTTTCCATTG  695

seq1  TAAAGTTACCTATTAAGTAATAAATGGTGTATTGTGGCTGCCATGAGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTACCTATTAAGTAATAAATGGTGTATTGTGGCTGCCATGAGAGA  745

seq1  CTGTGAATGTCCCCTGACCCACACTTTTGATTTTGTATTTTTTTTTCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATGTCCCCTGACCCACACTTTTGATTTTGTATTTTTTTTTCCTT  795

seq1  GCCCCAGAGACAAATAGCCCACGCTGGCCTATAACTTGCCACAAAGAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAGACAAATAGCCCACGCTGGCCTATAACTTGCCACAAAGAGGA  845

seq1  ATTC  953
      ||||
seq2  ATTC  849

seq1: chr2_51868893_51869354
seq2: B6Ng01-025A21.g_64_525

seq1  GAATTCTGGGTGTGACAGTGCAGTTTGTTCACGTTTCTGTGCTACAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTGTGACAGTGCAGTTTGTTCACGTTTCTGTGCTACAGATT  50

seq1  GACAGCAAGGCCTTCCTTGGTCATGCCGCAGAGGCATGTAACCACTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAAGGCCTTCCTTGGTCATGCCGCAGAGGCATGTAACCACTGCAC  100

seq1  TATACATGCCCAACCTGGGACAGGTTGAACAAAGAAGCAGATTAGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGCCCAACCTGGGACAGGTTGAACAAAGAAGCAGATTAGCATAA  150

seq1  GGTCATCTGCACTCTGGCCTGACTCGGTTCTCTGGACTAGTGCAGCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTGCACTCTGGCCTGACTCGGTTCTCTGGACTAGTGCAGCTCTC  200

seq1  TCCCTCAGAGTCTCTCTCTCCATCTGCCCATCTGCTTTGGGAAATCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGAGTCTCTCTCTCCATCTGCCCATCTGCTTTGGGAAATCTCCT  250

seq1  GGCAGAGAGCACAGAGAGCCTCACATGCTTGCCTTCCGCCTGCACAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGCACAGAGAGCCTCACATGCTTGCCTTCCGCCTGCACAGCCT  300

seq1  CCAACCCGGTGGAAGGGGAAAGCCAGGCGTGGGAAGGAGGAGAGGAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCGGTGGAAGGGGAAAGCCAGGCGTGGGAAGGAGGAGAGGAAATT  350

seq1  CCCTTTGGAAAACCCAAAAGGTCTTACTGCCTCTTGGATTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGAAAACCCAAAAGGTCTTACTGCCTCTTGGATTTTTTTTTTTT  400

seq1  TGCTCTTTATTTCCTATCAATGTGTGCGTGAGTGTGTGTGTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTATTTCCTATCAATGTGTGCGTGAGTGTGTGTGTGTGTGTGTG  450

seq1  TGTGAGAGAGAG  462
      ||||||||||||
seq2  TGTGAGAGAGAG  462