BAC Information

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BAC

Clone NameB6Ng01-025G09
Chromosome2 (Build37)15 (Build37)
Map Location 162,791,176 - 162,791,90483,441,008 - 83,441,217
singlet/doubletsingletsinglet
Overlap geneL3mbtl
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6
Downstream geneLOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025G09.bB6Ng01-025G09.g
ACCDH856760DH856761
length728508
definitionDH856760|Mus musculus domesticus DNA, BAC clone: B6Ng01-025G09, 5' end.DH856761|Mus musculus domesticus DNA, BAC clone: B6Ng01-025G09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(162,791,176 - 162,791,904)(83,441,008 - 83,441,217)
sequence
gaattcctgccccactgacctgtccacccccaggtccccagcctagggtc
ccagagccacctttatccgatgatcctccacatcttccacactggctacc
cggatcagtgctgggttccggcggtctacagcctccagcttcatgttcac
caggaagctgtgagggggtcgctgtagggagacaagactcttcaggctaa
ggctcagcttgggagagctgaggctccaaggagagagctacaggggagac
agtgtcttggccaaggcctccttctggctgactgacagtctggaaaaggc
aagattcaactcaccactttgaaggcccaattgggcacagccgaggtccc
agtttcttctagatatttctcccagcagaagctgtcagggtctgggtagt
ctagagaaggggtgagaacaggatctgagccagccaagtgactcaaggaa
ctctctgtccccagtcaggatcaagaacacagagggaagcccggcatggt
agtgcacacctttaatcccagcaaaattgggaggcagaggcaggtggatc
tctgtgagttcgaggccagcctagtttacagagcaagttctaggacagcc
agggctacactgagaaagcctgtctcaaaaatgaaaacaacaactaacga
aatgaaataaccatagagggggtggagattcttggagaagaaacttcccc
catgtgactacagttatttgttgcgtgg
aaggccaaaatagcagaaagttctgcaattgagatagtccatagaactga
tcaagaaagagcagaatctttgtaaaaataaataagatcagcaaactccc
agtcaaactagtcaaaaaagagaaaacccacataaataaaattagaggtg
aaaggggcaagttaatatggattccaatgaaatacagagaattgctagag
ggtgttgaaaacttacattcaaaaagattgggaaagaatctagaaggagt
taatagattgtaggacacatagacctactgaatttaagtcaatggtctta
agaaatagctcaatggccaggcatggtggcacacgcctttaatctcagca
cttgggaggcagaggtaggcagatttctgagttcgaggccagcctggtct
acagagtgagttccaggacagccagggctacacagagaatccctgtctta
aaaaacaaaacgaagaagaagaagaaggaggaggaggaagaggaggagga
ggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162791176_162791904
seq2: B6Ng01-025G09.b_35_762 (reverse)

seq1  CCACGCAAACAACTAACTGTAGTCACATGGGGGAAGTTTCTTCTCCAAGA  50
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  CCACGC-AACAAATAACTGTAGTCACATGGGGGAAGTTTCTTCTCCAAGA  49

seq1  ATCTCCACCCCCTCTATGGTTTTTTCATTTCGTTTGTTGTTGTTTTCATT  100
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  ATCTCCACCCCCTCTATGGTTATTTCATTTCGTTAGTTGTTGTTTTCATT  99

seq1  TTTGAGACAGGCTTTCTCAGTGTAGCCCTGGCTGTCCTAGAACTTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGCTTTCTCAGTGTAGCCCTGGCTGTCCTAGAACTTGCTCT  149

seq1  GTAAACTAGGCTGGCCTCGAACTCACAGAGATCCACCTGCCTCTGCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTAGGCTGGCCTCGAACTCACAGAGATCCACCTGCCTCTGCCTCC  199

seq1  CAATTTTGCTGGGATTAAAGGTGTGCACTACCATGCCGGGCTTCCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGCTGGGATTAAAGGTGTGCACTACCATGCCGGGCTTCCCTCTG  249

seq1  TGTTCTTGATCCTGACTGGGGACAGAGAGTTCCTTGAGTCACTTGGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGATCCTGACTGGGGACAGAGAGTTCCTTGAGTCACTTGGCTGG  299

seq1  CTCAGATCCTGTTCTCACCCCTTCTCTAGACTACCCAGACCCTGACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATCCTGTTCTCACCCCTTCTCTAGACTACCCAGACCCTGACAGCT  349

seq1  TCTGCTGGGAGAAATATCTAGAAGAAACTGGGACCTCGGCTGTGCCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGAGAAATATCTAGAAGAAACTGGGACCTCGGCTGTGCCCAAT  399

seq1  TGGGCCTTCAAAGTGGTGAGTTGAATCTTGCCTTTTCCAGACTGTCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTCAAAGTGGTGAGTTGAATCTTGCCTTTTCCAGACTGTCAGTC  449

seq1  AGCCAGAAGGAGGCCTTGGCCAAGACACTGTCTCCCCTGTAGCTCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGGAGGCCTTGGCCAAGACACTGTCTCCCCTGTAGCTCTCTCC  499

seq1  TTGGAGCCTCAGCTCTCCCAAGCTGAGCCTTAGCCTGAAGAGTCTTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCCTCAGCTCTCCCAAGCTGAGCCTTAGCCTGAAGAGTCTTGTCT  549

seq1  CCCTACAGCGACCCCCTCACAGCTTCCTGGTGAACATGAAGCTGGAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAGCGACCCCCTCACAGCTTCCTGGTGAACATGAAGCTGGAGGCT  599

seq1  GTAGACCGCCGGAACCCAGCACTGATCCGGGTAGCCAGTGTGGAAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCGCCGGAACCCAGCACTGATCCGGGTAGCCAGTGTGGAAGATGT  649

seq1  GGAGGATCATCGGATAAAGGTGGCTCTGGGACCCTAGGCTGGGGACCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATCATCGGATAAAGGTGGCTCTGGGACCCTAGGCTGGGGACCTGG  699

seq1  GGGTGGACAGGTCAGTGGGGCAGGAATTC  729
      |||||||||||||||||||||||||||||
seq2  GGGTGGACAGGTCAGTGGGGCAGGAATTC  728

seq1: chr15_83441008_83441217
seq2: B6Ng01-025G09.g_389_581 (reverse)

seq1  CCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTCTCTCTCTTTTTTTTTTT  50
      |||||||||||||||||||||| || ||        ||| || || || |
seq2  CCTCCTCCTCCTCCTCCTCTTCCTCCTC--------CTCCTTCTTCTTCT  42

seq1  TTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGC  100
      | ||  ||||          ||||||  |||||||| |||||||||||||
seq2  TCTTCGTTTT----------GTTTTTTAAGACAGGGATTCTCTGTGTAGC  82

seq1  CCTGGCTGT-CTGGAACTCACTCTGTAGACCAGGCTGGCCTCG-ACTCAG  148
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAG  132

seq1  AAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCA  198
      |||||||||| |||||||||||||||||||| |||||||||| |||||||
seq2  AAATCTGCCTACCTCTGCCTCCCAAGTGCTGAGATTAAAGGCGTGTGCCA  182

seq1  CCACTGCCTGGC  210
      ||| ||||||||
seq2  CCA-TGCCTGGC  193