BAC Information

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BAC

Clone NameB6Ng01-025I08
Chromosome2 (Build37)
Map Location 120,319,312 - 120,478,533
singlet/doubletdoublet
Overlap geneCapn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9
Upstream geneExdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc
Downstream geneCdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025I08.bB6Ng01-025I08.g
ACCDH856844DH856845
length9831,228
definitionDH856844|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I08, 5' end.DH856845|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,319,312 - 120,320,135)(120,477,283 - 120,478,533)
sequence
gaattcaggaactcaaacaggcaggaacctggaagcagacgctgatgcag
agaccatggaggggtgctgtttaccagcttgcttgatttttttatagaac
acaggaccacaggttgtctgcttacagcccaatcttagggagacatttta
tcagtggctgagaggaggagattccctcttttctgatgactctaacttgt
atcaagttgatataaaattagccatcataagggtagggggtctcactcac
caataattacacaaacgcttggatcatgctttccataaataactgtgcat
cttacagttgtccggaatgggaagcaggcctcttaaactttttttacata
tatcttcttttcaatgaggaatttttacacaaccccgtgtataggtgtat
aaaataggtatgcaaatcagacacttactgataaatcattaagacattta
cttgggagtctgggagtgtaacacagttgatagtttgcttgtctagcatg
catgaagtcacaccctcacacacatacacacagagaataaagcatgtatg
gtggcacatgcttctaatcccagcacgaaggagtcaggagaattgtcaca
aaaaatgaaaagaaaataaatttattttattttaaaacagttcatggtgc
acatgtaagtttgccatttattttatgttaatgagataggtgcacttgtt
cgctttttgctcaaaaaaattaaatcttgtggaatattagataccgtagg
acacagagcatcttctttttggaattgatggatattttgatgtcataatt
gtcaatcttgagaatcccatttatataaataagtagtacgaatcggcagc
agttcttagggccatttcagaaatttctgggaattctgttcttaattcta
agtcaaaatccatttaatgggaactggcgagattgactcatggtaaagag
ctcttactgctcttgcagaaacttcggttcgtt
gaattcacagtcatggaaagaatgagtaatgaatatataactctggactg
actccagtacactcacaaaagacatgtggaggaaaattacattatggctg
ttctgtagctttcctctaaatcccgcctgaattactctccacacgtgtta
tcttcattcagcagctcatcaccaggtcagtgttgcacacggcgctgtct
tttcagtgtgctcacagagctcctcagcattgtttctaaggggtctgctc
cagcagcactaagaggtagtcaagaaggaccaacctgctttgcattgttt
gcgctgcaaatccttatacagaaggaagcaggacgctggagatgtggctc
agtgggcagggagctcaccagacaagacagatgtgaaaactagtgtttgg
gttctgagaacagaagagctgggtgggtgtggcacctcacccatcatcct
agcatgcaggagaggaaggcagggaatcccagctaaattaggcaaaaagt
tgaatccagtgatagagctgcctcagcacttaactcagagtgactgagga
agacacggggcatcaaccttgggcctacacacgcacgcacgcacgcacgc
acgcacgcacgcacttgtttgcacatacaagaaccttcatacatgcctcc
acaccacacatacacaaatatgggggaaggaaaacaagcccaaacgattg
tgcctatgtggaaaaacttttccgacaattatgctgctagaagcttattt
cctgtttttaatcttgttgagtctgaagggtctctccaggtcagtgttgg
tgcatactctagcaaggccagttgaagcccatctcactttaaggtttggg
tttacagattttgtgatgcatctgccttagacagccccactggcagtaca
cctcctgcctaaagccatattcccctcctcctgtcccaaagcctttgcag
aaggacaggctgcgtgttagtcacaagacctcaaaacacactgatgtcag
cacttcttccccttcagcctcaaacttcaagtcaatttcaaactacacaa
agctactccagctttacaaatattctgcaacaaagaagcagaggatctta
attctcttgtttcaacaagaaaacaaagcagcacgttgtagccctctggg
tcttccttcccctctgatttgacatgaactctaggaactggcagataagg
gacatctctttaagggtgccaggaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120319312_120320135
seq2: B6Ng01-025I08.b_43_867

seq1  GAATTCAGGAACTCAAACAGGCAGGAACCTGGAAGCAGACGCTGATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAACTCAAACAGGCAGGAACCTGGAAGCAGACGCTGATGCAG  50

seq1  AGACCATGGAGGGGTGCTGTTTACCAGCTTGCTTGATTTTTTTATAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATGGAGGGGTGCTGTTTACCAGCTTGCTTGATTTTTTTATAGAAC  100

seq1  ACAGGACCACAGGTTGTCTGCTTACAGCCCAATCTTAGGGAGACATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCACAGGTTGTCTGCTTACAGCCCAATCTTAGGGAGACATTTTA  150

seq1  TCAGTGGCTGAGAGGAGGAGATTCCCTCTTTTCTGATGACTCTAACTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCTGAGAGGAGGAGATTCCCTCTTTTCTGATGACTCTAACTTGT  200

seq1  ATCAAGTTGATATAAAATTAGCCATCATAAGGGTAGGGGGTCTCACTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTTGATATAAAATTAGCCATCATAAGGGTAGGGGGTCTCACTCAC  250

seq1  CAATAATTACACAAACGCTTGGATCATGCTTTCCATAAATAACTGTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTACACAAACGCTTGGATCATGCTTTCCATAAATAACTGTGCAT  300

seq1  CTTACAGTTGTCCGGAATGGGAAGCAGGCCTCTTAAACTTTTTTTACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTTGTCCGGAATGGGAAGCAGGCCTCTTAAACTTTTTTTACATA  350

seq1  TATCTTCTTTTCAATGAGGAATTTTTACACAACCCCGTGTATAGGTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTTTCAATGAGGAATTTTTACACAACCCCGTGTATAGGTGTAT  400

seq1  AAAATAGGTATGCAAATCAGACACTTACTGATAAATCATTAAGACATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGTATGCAAATCAGACACTTACTGATAAATCATTAAGACATTTA  450

seq1  CTTGGGAGTCTGGGAGTGTAACACAGTTGATAGTTTGCTTGTCTAGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGTCTGGGAGTGTAACACAGTTGATAGTTTGCTTGTCTAGCATG  500

seq1  CATGAAGTCACACCCTCACACACATACACACAGAGAATAAAGCATGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTCACACCCTCACACACATACACACAGAGAATAAAGCATGTATG  550

seq1  GTGGCACATGCTTCTAATCCCAGCACGAAGGAGTCAGGAGAATTGTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACATGCTTCTAATCCCAGCACGAAGGAGTCAGGAGAATTGTCACA  600

seq1  AAAAATGAAAAGAAAATAAATTTATTTTATTTTAAAACAGTTCATGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAAGAAAATAAATTTATTTTATTTTAAAACAGTTCATGGTGC  650

seq1  ACATGTAAGTTTGCCATTTATTTTATGTTAATGAGATAGGTGCACTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAGTTTGCCATTTATTTTATGTTAATGAGATAGGTGCACTTGTT  700

seq1  CGC-TTTTGCTCAAAAAAATTAAATCTTGTGGAATATTAGATACCGTAGG  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTTTGCTCAAAAAAATTAAATCTTGTGGAATATTAGATACCGTAGG  750

seq1  ACACAGAGCATCTTCTTTTTGGAATTGATGGATATTTTGATGTCATAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGCATCTTCTTTTTGGAATTGATGGATATTTTGATGTCATAATT  800

seq1  GTCAATCTTGAGAATCCCATTTATA  824
      |||||||||||||||||||||||||
seq2  GTCAATCTTGAGAATCCCATTTATA  825

seq1: chr2_120477283_120478533
seq2: B6Ng01-025I08.g_68_1295 (reverse)

seq1  GCATTCCTGGCACCCCTTTTTCTAAGTAGGTTCTCTTTTATCTGTGCTGT  50
      |||||||||||||||     |  |||   | | ||  |||||||  | ||
seq2  GCATTCCTGGCACCC-----TTAAAG--AGATGTCCCTTATCTG-CCAGT  42

seq1  TCCTTGGGGTGTCAGTTTCAAATCAGAGGGGAGTGAAGACTCCAGAAGGC  100
      |||| | |   ||| | |||||||||||||||  |||||| ||||| |||
seq2  TCCTAGAG--TTCA-TGTCAAATCAGAGGGGAAGGAAGAC-CCAGAGGGC  88

seq1  TTCATACGTGCTGCTTTGTTTTTCTTTGTTTGGAGAC-AGAGAATTAAGA  149
      | || |||||||||||||||||   |||||  || || ||||||||||||
seq2  TACA-ACGTGCTGCTTTGTTTT--CTTGTT--GAAACAAGAGAATTAAGA  133

seq1  TCCTCCTGCTTCTTTGTTGCAGGAATATTTGTAAAGCTGGAGTTAGCTTT  199
      |||| |||||||||||||||| |||||||||||||||||||| |||||||
seq2  TCCT-CTGCTTCTTTGTTGCA-GAATATTTGTAAAGCTGGAG-TAGCTTT  180

seq1  GTGTAGTTTGAAATTGACTTGAAGTCTGAGGGCTGAAGGGGAAGAAGTGG  249
      ||||||||||||||||||||||||| ||| ||||||||||||||||||| 
seq2  GTGTAGTTTGAAATTGACTTGAAGTTTGA-GGCTGAAGGGGAAGAAGTG-  228

seq1  CTTGACATCAGTGTGTTTTGAGGTCTTGTGACTAACACGCAGCCTGTCCC  299
        ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -CTGACATCAGTGTGTTTTGAGGTCTTGTGACTAACACGCAGCCTGT-CC  276

seq1  TTCTGCAAAGGCTTTGGGACAGGAGGAGGGGAATATGGCTTTAGGCAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAAGGCTTTGGGACAGGAGGAGGGGAATATGGCTTTAGGCAGGA  326

seq1  GGTGTACTGCCAGTGGGGCTGTCTAAGGCAGATGCATCACAAAATCTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTGTACTGCCAGTGGGGCTGTCTAAGGCAGATGCATCACAAAATCTGTA  376

seq1  AAACCAAACCTTAAAGTGAGATGGGCTTCAACTGGCCTTGCTAGAGTATG  449
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAACCTTAAAGTGAGATGGGCTTCAACTGGCCTTGCTAGAGTATG  426

seq1  CACCAACACTGACCTGGAGAGACCCTTCAGACTCAACAAGATTAAAAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACACTGACCTGGAGAGACCCTTCAGACTCAACAAGATTAAAAACA  476

seq1  GGAAATAAGCTTCTAGCAGCATAATTGTCGGAAAAGTTTTTCCACATAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAGCTTCTAGCAGCATAATTGTCGGAAAAGTTTTTCCACATAGG  526

seq1  CACAATCGTTTGGGCTTGTTTTCCTTCCCCCATATTTGTGTATGTGTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCGTTTGGGCTTGTTTTCCTTCCCCCATATTTGTGTATGTGTGGT  576

seq1  GTGGAGGCATGTATGAAGGTTCTTGTATGTGCAAACAAGTGCGTGCGTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCATGTATGAAGGTTCTTGTATGTGCAAACAAGTGCGTGCGTGC  626

seq1  GTGCGTGCGTGCGTGCGTGCGTGTGTAGGCCCAAGGTTGATGCCCCGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGCGTGCGTGCGTGCGTGTGTAGGCCCAAGGTTGATGCCCCGTGT  676

seq1  CTTCCTCAGTCACTCTGAGTTAAGTGCTGAGGCAGCTCTATCACTGGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAGTCACTCTGAGTTAAGTGCTGAGGCAGCTCTATCACTGGATT  726

seq1  CAACTTTTTGCCTAATTTAGCTGGGATTCCCTGCCTTCCTCTCCTGCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTTGCCTAATTTAGCTGGGATTCCCTGCCTTCCTCTCCTGCATG  776

seq1  CTAGGATGATGGGTGAGGTGCCACACCCACCCAGCTCTTCTGTTCTCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATGATGGGTGAGGTGCCACACCCACCCAGCTCTTCTGTTCTCAGA  826

seq1  ACCCAAACACTAGTTTTCACATCTGTCTTGTCTGGTGAGCTCCCTGCCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACACTAGTTTTCACATCTGTCTTGTCTGGTGAGCTCCCTGCCCA  876

seq1  CTGAGCCACATCTCCAGCGTCCTGCTTCCTTCTGTATAAGGATTTGCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCACATCTCCAGCGTCCTGCTTCCTTCTGTATAAGGATTTGCAGC  926

seq1  GCAAACAATGCAAAGCAGGTTGGTCCTTCTTGACTACCTCTTAGTGCTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAATGCAAAGCAGGTTGGTCCTTCTTGACTACCTCTTAGTGCTGC  976

seq1  TGGAGCAGACCCCTTAGAAACAATGCTGAGGAGCTCTGTGAGCACACTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGACCCCTTAGAAACAATGCTGAGGAGCTCTGTGAGCACACTGA  1026

seq1  AAAGACAGCGCCGTGTGCAACACTGACCTGGTGATGAGCTGCTGAATGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGCGCCGTGTGCAACACTGACCTGGTGATGAGCTGCTGAATGAA  1076

seq1  GATAACACGTGTGGAGAGTAATTCAGGCGGGATTTAGAGGAAAGCTACAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACGTGTGGAGAGTAATTCAGGCGGGATTTAGAGGAAAGCTACAG  1126

seq1  AACAGCCATAATGTAATTTTCCTCCACATGTCTTTTGTGAGTGTACTGGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCATAATGTAATTTTCCTCCACATGTCTTTTGTGAGTGTACTGGA  1176

seq1  GTCAGTCCAGAGTTATATATTCATTACTCATTCTTTCCATGACTGTGAAT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCAGAGTTATATATTCATTACTCATTCTTTCCATGACTGTGAAT  1226

seq1  TC  1251
      ||
seq2  TC  1228