BAC Information

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BAC

Clone NameB6Ng01-025I16
Chromosome2 (Build37)
Map Location 73,009,425 - 73,187,787
singlet/doubletdoublet
Overlap geneGtpbp9, Sp9, 1700023B02Rik, Scrn3
Upstream geneRapgef4, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, LOC620110
Downstream geneGpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025I16.bB6Ng01-025I16.g
ACCDH856860DH856861
length1,141108
definitionDH856860|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I16, 5' end.DH856861|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,186,631 - 73,187,787)(73,009,425 - 73,009,532)
sequence
gaattcagccagaataactgttttctccccccaccccagggatttatttc
ctttggaatctttgggctggacaaacatctaatcatcctacctttcaaaa
gaaggtaaattccgtttcaaaataagcctgtgtacctaaagatgataagg
tcattctattaaaatattgatacctttgtatttttatatctgctaggaga
ccactaaataccacacaaaggttatctgtgaaatcatgtatttgttgcaa
ataattgcagagaatgtatcggaagtggtattataaatccagcaatgtaa
tttgcattttaacaagagctgacaggcacagacttctatccatgttatta
actgcatacagtgaaatgaaacttgcaaatggaagtatttggtggtgtgt
tcctccattaaaggctacacctgattgtttctcgccctttgacaataggc
tttctcttcctatcaaagaaagagtaggcagaaaatttaagggttctctc
aactttggaggttctgtttgcttcctgtatacttttttaaaattaaaatc
agtgtttctttcttttttttaaatatttatttatttatttatttattgta
tatgaatatacactgtagctgtacagatagttgtgagtcttcatctggtt
gttgggaattgaatttaggacctctgctcgctccagtaggcccacttgct
cagtccctgctcactccagcccaaggatttgtttattattatacataagt
acactgtagctgtcttcagatgcaccagaagagggcgtcagatctcatta
caggtggttgtgagcaccatgtggttggtgggatttggactcagaccttt
ggaagagcagtcggtgctcttacctactgagccatctcaccagccccaat
gtttcttcctgaaaaataacaaggtaaagttcaacatagggggtggaaag
agaggcaggagagtgcttgcttttcatttgctctgaggcaaatgcagaga
cacaagagtgctagtgaggcttccctttcctctcatcacaatcatcgtca
ccgctcttattcacttgtcttgctcagagtcacgatcatttccaaaggaa
agataactaggagtccttctgcctagcaccagcttcacata
attatgatgtgacataaaaactgttgagaactgaggctaaagagctgtct
tggtggttaagagctgtgtctgaagccatgttagtgtttgtgggaggggt
gtggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73186631_73187787
seq2: B6Ng01-025I16.b_48_1188 (reverse)

seq1  TATGTGAAGCTGGTGACTAAGCAGAAGGGCTTCCTTGTTATACTTTCCTT  50
      ||||||||||||||| ||| |||||||| | |||| ||||| |||||| |
seq2  TATGTGAAGCTGGTG-CTAGGCAGAAGGAC-TCCTAGTTAT-CTTTCC-T  46

seq1  TTGGAAATGATCGTGACTCTGAGCAAAGACAGCTGAATAAGATGGCGGTG  100
      |||||||||||||||||||||||| ||||||  |||||||||  ||||||
seq2  TTGGAAATGATCGTGACTCTGAGC-AAGACAAGTGAATAAGA--GCGGTG  93

seq1  ACGATGATGGTGATGGAGAGGAAAGGGAAGGCCCTCACTAGCACTTCTAG  150
      |||||||| ||||| |||||||||||||||  |||||||||||| ||| |
seq2  ACGATGATTGTGAT-GAGAGGAAAGGGAAG--CCTCACTAGCAC-TCTTG  139

seq1  TGTCTCTGCAATTTGCCTCAAGAGCAAATGAAAAGCAAGCACTCTCCCTG  200
      ||||||||| ||||||||| ||||||||||||||||||||||||| ||||
seq2  TGTCTCTGC-ATTTGCCTC-AGAGCAAATGAAAAGCAAGCACTCT-CCTG  186

seq1  CCTCTCTTTCCA-CCCCTATGTTGAAACTTTTACCTTGTTATTTTTCAGG  249
      |||||||||||| |||||||||||||   |||||||||||||||||||||
seq2  CCTCTCTTTCCACCCCCTATGTTGAA--CTTTACCTTGTTATTTTTCAGG  234

seq1  AAGAAACATTGGGGCTGGTGAGATGGCTCAGTAGGTAAGAGCACCGACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATTGGGGCTGGTGAGATGGCTCAGTAGGTAAGAGCACCGACTG  284

seq1  CTCTTCCAAAGGTCCTGAGTCCAAATCCCACCAACCACATGGTGCTCACA  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAAAGGT-CTGAGTCCAAATCCCACCAACCACATGGTGCTCACA  333

seq1  ACCACCTGTAATGAGATCTGACGCCCTCTTCTGGTGCATCTGAAGACAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGTAATGAGATCTGACGCCCTCTTCTGGTGCATCTGAAGACAGC  383

seq1  TACAGTGTACTTATGTATAATAATAAACAAATCCTTGGGCTGGAGTGAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTACTTATGTATAATAATAAACAAATCCTTGGGCTGGAGTGAGC  433

seq1  AGGGACTGAGCAAGTGGGCCTACTGGAGCGAGCAGAGGTCCTAAATTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGAGCAAGTGGGCCTACTGGAGCGAGCAGAGGTCCTAAATTCAA  483

seq1  TTCCCAACAACCAGATGAAGACTCACAACTATCTGTACAGCTACAGTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACAACCAGATGAAGACTCACAACTATCTGTACAGCTACAGTGTA  533

seq1  TATTCATATACAATAAATAAATAAATAAATAAATATTTAAAAAAAAGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATACAATAAATAAATAAATAAATAAATATTTAAAAAAAAGAAA  583

seq1  GAAACACTGATTTTAATTTTAAAAAAGTATACAGGAAGCAAACAGAACCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTGATTTTAATTTTAAAAAAGTATACAGGAAGCAAACAGAACCT  633

seq1  CCAAAGTTGAGAGAACCCTTAAATTTTCTGCCTACTCTTTCTTTGATAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTGAGAGAACCCTTAAATTTTCTGCCTACTCTTTCTTTGATAGG  683

seq1  AAGAGAAAGCCTATTGTCAAAGGGCGAGAAACAATCAGGTGTAGCCTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGCCTATTGTCAAAGGGCGAGAAACAATCAGGTGTAGCCTTTA  733

seq1  ATGGAGGAACACACCACCAAATACTTCCATTTGCAAGTTTCATTTCACTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAACACACCACCAAATACTTCCATTTGCAAGTTTCATTTCACTG  783

seq1  TATGCAGTTAATAACATGGATAGAAGTCTGTGCCTGTCAGCTCTTGTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTTAATAACATGGATAGAAGTCTGTGCCTGTCAGCTCTTGTTAA  833

seq1  AATGCAAATTACATTGCTGGATTTATAATACCACTTCCGATACATTCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAATTACATTGCTGGATTTATAATACCACTTCCGATACATTCTCT  883

seq1  GCAATTATTTGCAACAAATACATGATTTCACAGATAACCTTTGTGTGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATTTGCAACAAATACATGATTTCACAGATAACCTTTGTGTGGTA  933

seq1  TTTAGTGGTCTCCTAGCAGATATAAAAATACAAAGGTATCAATATTTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGGTCTCCTAGCAGATATAAAAATACAAAGGTATCAATATTTTAA  983

seq1  TAGAATGACCTTATCATCTTTAGGTACACAGGCTTATTTTGAAACGGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGACCTTATCATCTTTAGGTACACAGGCTTATTTTGAAACGGAAT  1033

seq1  TTACCTTCTTTTGAAAGGTAGGATGATTAGATGTTTGTCCAGCCCAAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCTTTTGAAAGGTAGGATGATTAGATGTTTGTCCAGCCCAAAGA  1083

seq1  TTCCAAAGGAAATAAATCCCTGGGGTGGGGGGAGAAAACAGTTATTCTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGGAAATAAATCCCTGGGGTGGGGGGAGAAAACAGTTATTCTGG  1133

seq1  CTGAATTC  1157
      ||||||||
seq2  CTGAATTC  1141

seq1: chr2_73009425_73009532
seq2: B6Ng01-025I16.g_72_179

seq1  ATTATGATGTGACATAAAAACTGTTGAGAACTGAGGCTAAAGAGCTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATGTGACATAAAAACTGTTGAGAACTGAGGCTAAAGAGCTGTCT  50

seq1  TGGTGGTTAAGAGCTGTGTCTGAAGCCATGTTAGTGTTTGTGGGAGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTAAGAGCTGTGTCTGAAGCCATGTTAGTGTTTGTGGGAGGGGT  100

seq1  GTGGGGAT  108
      ||||||||
seq2  GTGGGGAT  108