BAC Information

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BAC

Clone NameB6Ng01-025N11
Chromosome2 (Build37)
Map Location 108,890,119 - 109,028,615
singlet/doubletdoublet
Overlap geneMett5d1
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031
Downstream geneKif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025N11.bB6Ng01-025N11.g
ACCDH857061DH857062
length9721,086
definitionDH857061|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N11, 5' end.DH857062|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,028,046 - 109,028,615)(108,890,119 - 108,891,220)
sequence
gaattcatttccttttgaaatcatcacagaggttctagagcagagtaata
ctgatattgtgttaccttagaacacactgtacttattaatagtcatgatc
acaactatagttaaaatatttatgaaattatctgattctcatctattttg
ctttacaatgtaagctccgacagaagctacatgtattaatttctttacag
atctcagaacttggaaatttttttgaaaactcttttgtacaatacatgct
tatgaaataagcatatttttcaaggcatgggatttttaaatcagagttca
gtgattttcttttcttttccttaaagatttatttatttaatttatatgag
tacagtgtagctgtcttcagccacaccaaaagaggacatcagattccatt
acagatggttgtgagctaccatgtggttgctggaaattgaactcaggaca
tctagaaaagcagtcagtgctcttaaccactgagccatctttccaacccc
agtgattttattttcacacacacacaaaaataatttcatactggataaac
tatagtgaaagttaactaattaacactatggggcatttgaaaaactgtat
agaaacccaatattctagaatagattcctaaaatatatacataaaagaag
agaatctaaattgagtcgcaatataatagggatatatgcctagtctagac
attctgtgccaacaagtaaaacctctagtaccagaaattaatgaaaccat
gttgagtcattggacaaagctgtcccatggtgtcccccaaacatcaaagg
cttttgccaacacaatctgttgctttctacaacatgatgaaaaaacccta
ttgttgaacacaatactgaagctttacacctacttaatagccttcatggt
actagaacatatcctgcatactacctgaagataaagggaaccatcattac
catatttgcaggtataatcctg
gaattcccctaaagtgctttaaattgggcctgggagctcacttaggtatg
ttcatcttggtaaatggtagaccccacatgctagacttttgctgaataaa
atgctctttgagtccagggtatcattcttcagcaaatcatgacccttaca
ccatttggcattaggactcatgtgtcgacttcttttatatgtagtttcca
tattcaaactaatgacaacacatattttatatgtttttactatggaggat
ttctccttgtgttttaaaaagatcacatgatatctttctgtcgatgtttt
ctatttttgggccttaattaaatcctggagctctcttttcccatataaca
taacaaagtcttggagtgatatcagaaaaataaaaggtcatgggatacaa
aattatagcttttgggatgtacatactgttcttcttttattttccattca
tgttttgattcatgacaaaaatggccaaggccatgaaaagaggatataat
aaactcaaatgaaaagtttaaagatttttttgcaccacatcagaacaaaa
tcccatttacttctaagttatattttattataatcacaaccttcttccac
atctggagggacagtagtccatcaccatcatagtaaagagtatgacagtg
aaagaacctagtggggaaacccccactcaagtcccgacgtgcacccaaga
atcacaaacaaacagaccatcttgatgtaaaaacacgaggtagtttaatg
gcagagcactgggtcgaaatatatctcactcaggagacagtggattcgac
cacgaggcttggaagctagggggttttatagaaaaggggctggggctggt
gtcagaattggcatggtttcacatgattggtctatttaaacatcagcaga
ctgtacatgcagataacatttaactagtcagaagggcagagatacgaggc
actgggacatctggacatgtcatctctttttcttatgccagcagcctcag
atgtcttatcgacgggctgcccagcatgtctgcctgttctgcctagtttc
ttagccccagttcaagctcacaaacaactcctttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_109028046_109028615
seq2: B6Ng01-025N11.b_35_604 (reverse)

seq1  TTAGTTAACTTTCACTATAGTTTATCCAGTATGAAATTATTTTTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAACTTTCACTATAGTTTATCCAGTATGAAATTATTTTTGTGTGT  50

seq1  GTGTGAAAATAAAATCACTGGGGTTGGAAAGATGGCTCAGTGGTTAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAATAAAATCACTGGGGTTGGAAAGATGGCTCAGTGGTTAAGAG  100

seq1  CACTGACTGCTTTTCTAGATGTCCTGAGTTCAATTTCCAGCAACCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTGCTTTTCTAGATGTCCTGAGTTCAATTTCCAGCAACCACATG  150

seq1  GTAGCTCACAACCATCTGTAATGGAATCTGATGTCCTCTTTTGGTGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCACAACCATCTGTAATGGAATCTGATGTCCTCTTTTGGTGTGGC  200

seq1  TGAAGACAGCTACACTGTACTCATATAAATTAAATAAATAAATCTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCTACACTGTACTCATATAAATTAAATAAATAAATCTTTAAG  250

seq1  GAAAAGAAAAGAAAATCACTGAACTCTGATTTAAAAATCCCATGCCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAAATCACTGAACTCTGATTTAAAAATCCCATGCCTTGA  300

seq1  AAAATATGCTTATTTCATAAGCATGTATTGTACAAAAGAGTTTTCAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGCTTATTTCATAAGCATGTATTGTACAAAAGAGTTTTCAAAAA  350

seq1  AATTTCCAAGTTCTGAGATCTGTAAAGAAATTAATACATGTAGCTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAAGTTCTGAGATCTGTAAAGAAATTAATACATGTAGCTTCTGT  400

seq1  CGGAGCTTACATTGTAAAGCAAAATAGATGAGAATCAGATAATTTCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCTTACATTGTAAAGCAAAATAGATGAGAATCAGATAATTTCATAA  450

seq1  ATATTTTAACTATAGTTGTGATCATGACTATTAATAAGTACAGTGTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAACTATAGTTGTGATCATGACTATTAATAAGTACAGTGTGTTC  500

seq1  TAAGGTAACACAATATCAGTATTACTCTGCTCTAGAACCTCTGTGATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAACACAATATCAGTATTACTCTGCTCTAGAACCTCTGTGATGAT  550

seq1  TTCAAAAGGAAATGAATTCC  570
      ||||||||||||||||||||
seq2  TTCAAAAGGAAATGAATTCC  570

seq1: chr2_108890119_108891220
seq2: B6Ng01-025N11.g_67_1152

seq1  GAATTCCCCTAAAGTGCTTTAAATTGGGCCTGGGAGCTCACTTAGGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTAAAGTGCTTTAAATTGGGCCTGGGAGCTCACTTAGGTATG  50

seq1  TTCATCTTGGTAAATGGTAGACCCCACATGCTAGACTTTTGCTGAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTGGTAAATGGTAGACCCCACATGCTAGACTTTTGCTGAATAAA  100

seq1  ATGCTCTTTGAGTCCAGGGTATCATTCTTCAGCAAATCATGACCCTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTTGAGTCCAGGGTATCATTCTTCAGCAAATCATGACCCTTACA  150

seq1  CCATTTGGCATTAGGACTCATGTGTCGACTTCTTTTATATGTAGTTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGGCATTAGGACTCATGTGTCGACTTCTTTTATATGTAGTTTCCA  200

seq1  TATTCAAACTAATGACAACACATATTTTATATGTTTTTACTATGGAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAACTAATGACAACACATATTTTATATGTTTTTACTATGGAGGAT  250

seq1  TTCTCCTTGTGTTTTAAAAAGATCACATGATATCTTTCTGTCGATGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGTGTTTTAAAAAGATCACATGATATCTTTCTGTCGATGTTTT  300

seq1  CTATTTTTGGGCCTTAATTAAATCCTGGAGCTCTCTTTTCCCATATAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTGGGCCTTAATTAAATCCTGGAGCTCTCTTTTCCCATATAACA  350

seq1  TAACAAAGTCTTGGAGTGATATCAGAAAAATAAAAGGTCATGGGATACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGTCTTGGAGTGATATCAGAAAAATAAAAGGTCATGGGATACAA  400

seq1  AATTATAGCTTTTGGGATGTACATACTGTTCTTCTTTTATTTTCCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGCTTTTGGGATGTACATACTGTTCTTCTTTTATTTTCCATTCA  450

seq1  TGTTTTGATTCATGACAAAAATGGCCAAGGCCATGAAAAGAGGATATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGATTCATGACAAAAATGGCCAAGGCCATGAAAAGAGGATATAAT  500

seq1  AAACTCAAATGAAAAGTTTAAAGATTTTTTTGCACCACATCAGAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAATGAAAAGTTTAAAGATTTTTTTGCACCACATCAGAACAAAA  550

seq1  TCCCATTTACTTCTAAGTTATATTTTATTATAATCACAACCTTCTTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTACTTCTAAGTTATATTTTATTATAATCACAACCTTCTTCCAC  600

seq1  ATCTGGAGGGACAGTAGTCCATCACCATCATAGTAAAGAGTATGACAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGGGACAGTAGTCCATCACCATCATAGTAAAGAGTATGACAGTG  650

seq1  AAAGAACCTAGTGGGGAAACCCCCACTCAAGTCCCGACGTGCACCCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCTAGTGGGGAAACCCCCACTCAAGTCCCGACGTGCACCCAAGA  700

seq1  ATCACAAACAAACAGACCATCTTGATGTAAAAACACGAGGTAGTTTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAACAAACAGACCATCTTGATGTAAAAACACGAGGTAGTTTAATG  750

seq1  GCAGAGCACTGGGTCGAAATATATCTCACTCAGGAGACAGTGGATTCGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCACTGGGTCGAAATATATCTCACTCAGGAGACAGTGGATTCGAC  800

seq1  CACGAGGCTTGGAAGCTAGGGGGTTTTATAGAAAAGGGGCTGGGGCTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGCTTGGAAGCTAGGGGGTTTTATAGAAAAGGGGCTGGGGCTGGT  850

seq1  GTCAGAATTGGCATGGTTTCACATGATTGGTCTATTTAAACATCAGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATTGGCATGGTTTCACATGATTGGTCTATTTAAACATCAGCAGA  900

seq1  CTGTACATGCAGATAACATTTAACTTAGGTCAGAAGGGCAGGAGATAGGG  950
      |||||||||||||||||||||||||   |||||||||||| ||||||  |
seq2  CTGTACATGCAGATAACATTTAACT--AGTCAGAAGGGCA-GAGATA-CG  946

seq1  AGGCACTGGGACAATCTGGACATGTCATTCTCTTTATCTTTATGGCCAAG  1000
      |||||||||||| |||||||||||||| ||||||| || |||||  | ||
seq2  AGGCACTGGGAC-ATCTGGACATGTCA-TCTCTTTTTC-TTATG--CCAG  991

seq1  CAGCCTCAAGAATGTCTTATCGACGGGCCTGCCCGGGCATGTCCTGGCCT  1050
      ||||||||   |||||||||||||||| ||||||  |||||||   ||||
seq2  CAGCCTCA--GATGTCTTATCGACGGG-CTGCCC-AGCATGTC--TGCCT  1035

seq1  GTTCTG-CTATGTTCTCAGCCCCAGGTTTCAAGGCTCACAAACAACT-CT  1098
      |||||| |||  |||| ||||||||  ||||| |||||||||||||| ||
seq2  GTTCTGCCTAGTTTCTTAGCCCCAG--TTCAA-GCTCACAAACAACTCCT  1082

seq1  TTGG  1102
      ||||
seq2  TTGG  1086