BAC Information

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BAC

Clone NameB6Ng01-026A18
Chromosome2 (Build37)
Map Location 177,017,710 - 177,131,091
singlet/doubletdoublet
Overlap geneLOC100039198, LOC100043406
Upstream geneLOC668030, LOC627914, LOC100039093, LOC668039, LOC100039109, LOC100043381, LOC100043387, LOC100039123, LOC626877, LOC100039156, LOC100039166, 6230416C02Rik, LOC635470, LOC100043403
Downstream geneLOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026A18.bB6Ng01-026A18.g
ACCDH857201DH857202
length1,109978
definitionDH857201|Mus musculus domesticus DNA, BAC clone: B6Ng01-026A18, 5' end.DH857202|Mus musculus domesticus DNA, BAC clone: B6Ng01-026A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,130,198 - 177,131,091)(177,017,710 - 177,018,692)
sequence
gaattcctaaaattatatcagtgattattaaactcttttatgatcggacg
gctgttaggtaaatttctgatattcaaaagtgcaatgagaactccgccag
tctcccaagcgtcaccaattaattgctcttagatagtaatcaggctttct
cctactcagagcacattccaagaggttgtaaaacaatttaccaaaggtca
taaaaaggaaactaatgatttattataggtgctaggctagaagatgaaat
atggactgtgtttatctctgcaaaactttactaataacttagttatggtt
ttaaaccttcagtgaacctgtgaatctgaatcaggtgatggttagctagc
cattagtaattactcctaatggtatgcatgtaaccattctcttttgtaaa
cttctttctcaatttttttttagtcttctcagctattgaaaggactcttt
tttttttttgtccctctatagagttttttttttttattacgtattttctt
caattacatttccaatgctatctcaaaagtcccccccccactcccctacc
cacccattcccatttttttgtgtgtgaacttgtagtgaactctgtaacat
gtgatcaggtattctgaaaaatgtataagtagtgaggacaaagagttaag
gaaaagagaaaggagaagtatttttgcccttccccacttaggagcttttt
gcttttcctcttagatagctttcataggtaacttttgacaacttagtagt
aaactccataaccacttctttgagtgtcccatttacttcctgtaacttct
gacttgcaggctaaaagttagagcccagcagttccttctgagatagagca
aaggccacattgcttaatcctcagctgttaggctacaggtgataatcacc
taagccatcagtcttctaccctcagaaagagcaaggaagttttaggctca
gacgctcaaagcaagtattaactacatggcataaggaaagcctgagctca
caggtgctctaaactgacagatatgtaatctcttaaaataggagtgaatt
attgacttctgggattagagaacaaggtctttcttggcttctgatggttc
agtcactgc
gaattcattacccactggctcaagctaacctgatcaaataaaacaccctt
caatctaggtttactaaattacatccatacatggatacagtctgtgaagt
tacaaaatcattcacactgccctaaccaggaccttctccataacagtgac
ccctgcagcacactccctttcactttggtctgtgacctagctcttgtctg
cactgttttacctgacagtgtacacagtaagctgttcctctggttctcat
cctgccaagtgtatttccacacacaagcccctgccacaaaggtttgtcca
gatgcagtcttataataaagttactcagaggccacagctgggaccaaaag
gagagagtaggtccacaaaggacctcatagatgtccccatctgtctggct
gatgctgacaatccagcctctgggaagagatattacacaagcatcctttg
ctaagatgcttgctcctcctctttgtgggagatgacattgcacttaccac
gtctgaagttctaagtttgcctgagctaacctcacagcaaccagcaaaaa
taataagtaccgattccacagaaacactgagatcagctgagttacacaga
ggaacatgcaggcttagtacctggaagagtcacctcctcttctgactggc
agctccatgtggaggctctaattcgctattgagtcttgagtgaagtgaac
accaggcttagggttagagtgtactgtagagatgcagccaagtggttcca
gtctgggccaatccttttccagatctgcagatttgcagttcagtagcacc
agtgtgtctcatccaatagtctattctctcgctagcccttgggagaggct
aagattcctgatccttgctgcctaagtgcctgcctctccctttctgggca
gtgccctgggtacactgctttgaaagtttggagcttgctgagctccattt
cagcgctcaggaggcaattcccttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_177130198_177131091
seq2: B6Ng01-026A18.b_278_1156 (reverse)

seq1  GCAGTGGACCTGAACCCAGTCAGAAGCCACAGAAAAGAACCTTGTTTCCT  50
      ||||||   |||||||   |||||||||| |||||   ||||||||  ||
seq2  GCAGTG--ACTGAACC--ATCAGAAGCCA-AGAAA--GACCTTGTT--CT  41

seq1  AAAATCACAGAAGTCAATAATTTCACTCCTATTTCTAAAGAGATTACATA  100
        |||| ||||||||||||| ||||||||||||  | |||||||||||||
seq2  CTAATCCCAGAAGTCAATAA-TTCACTCCTATT--TTAAGAGATTACATA  88

seq1  TCTGTCAGTTTAGAGCAACCTGTGTAGCTCAGGCTTTCCTTATGCCATGT  150
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TCTGTCAGTTTAGAGC-ACCTGTG-AGCTCAGGCTTTCCTTATGCCATGT  136

seq1  AGTTAATACTTGCTTTGAGCGTCTGAGCCTAAAAACTTCCTTGCTCTTTC  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTTAATACTTGCTTTGAGCGTCTGAGCCT-AAAACTTCCTTGCTCTTTC  185

seq1  TGAGGGTAGAAGACTGATGGCTTAGGTGATTATCACCTGTAGCCTAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTAGAAGACTGATGGCTTAGGTGATTATCACCTGTAGCCTAACAG  235

seq1  CTGAGGATTAAGCAATGTGGCCTTTGCTCTATCTCAGAAGGAACTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATTAAGCAATGTGGCCTTTGCTCTATCTCAGAAGGAACTGCTGG  285

seq1  GCTCTAACTTTTAGCCTGCAAGTCAGAAGTTACAGGAAGTAAATGGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAACTTTTAGCCTGCAAGTCAGAAGTTACAGGAAGTAAATGGGACA  335

seq1  CTCAAAGAAGTGGTTATGGAGTTTACTACTAAGTTGTCAAAAGTTACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAAGTGGTTATGGAGTTTACTACTAAGTTGTCAAAAGTTACCTA  385

seq1  TGAAAGCTATCTAAGAGGAAAAGCAAAAAGCTCCTAAGTGGGGAAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTATCTAAGAGGAAAAGCAAAAAGCTCCTAAGTGGGGAAGGGCA  435

seq1  AAAATACTTCTCCTTTCTCTTTTCCTTAACTCTTTGTCCTCACTACTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTCTCCTTTCTCTTTTCCTTAACTCTTTGTCCTCACTACTTAT  485

seq1  ACATTTTTCAGAATACCTGATCACATGTTACAGAGTTCACTACAAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCAGAATACCTGATCACATGTTACAGAGTTCACTACAAGTTCA  535

seq1  CACACAAAAAAATGGGAATGGGTGGGTAGGGGAGTGGGGGGGGGACTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAAAAATGGGAATGGGTGGGTAGGGGAGTGGGGGGGGGACTTTT  585

seq1  GAGATAGCATTGGAAATGTAATTGAAGAAAATACGTAATAAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGCATTGGAAATGTAATTGAAGAAAATACGTAATAAAAAAAAAAA  635

seq1  ACTCTATAGAGGGACAAAAAAAAAAAAGAGTCCTTTCAATAGCTGAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATAGAGGGACAAAAAAAAAAAAGAGTCCTTTCAATAGCTGAGAAG  685

seq1  ACTAAAAAAAAATTGAGAAAGAAGTTTACAAAAGAGAATGGTTACATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAAAAATTGAGAAAGAAGTTTACAAAAGAGAATGGTTACATGCA  735

seq1  TACCATTAGGAGTAATTACTAATGGCTAGCTAACCATCACCTGATTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTAGGAGTAATTACTAATGGCTAGCTAACCATCACCTGATTCAGA  785

seq1  TTCACAGGTTCACTGAAGGTTTAAAACCATAACTAAGTTATTAGTAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGTTCACTGAAGGTTTAAAACCATAACTAAGTTATTAGTAAAGT  835

seq1  TTTGCAGAGATAAACACAGTCCATATTTCATCTTCTAGCCTAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAGATAAACACAGTCCATATTTCATCTTCTAGCCTAGC  879

seq1: chr2_177017710_177018692
seq2: B6Ng01-026A18.g_65_1042

seq1  GAATTCATTACCCACTGGCTCAAGCTAACCTGATCAAATAAAACACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCCACTGGCTCAAGCTAACCTGATCAAATAAAACACCCTT  50

seq1  CAATCTAGGTTTACTAAATTACATCCATACATGGATACAGTCTGTGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGGTTTACTAAATTACATCCATACATGGATACAGTCTGTGAAGT  100

seq1  TACAAAATCATTCACACTGCCCTAACCAGGACCTTCTCCATAACAGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATCATTCACACTGCCCTAACCAGGACCTTCTCCATAACAGTGAC  150

seq1  CCCTGCAGCACACTCCCTTTCACTTTGGTCTGTGACCTAGCTCTTGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGCACACTCCCTTTCACTTTGGTCTGTGACCTAGCTCTTGTCTG  200

seq1  CACTGTTTTACCTGACAGTGTACACAGTAAGCTGTTCCTCTGGTTCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTTACCTGACAGTGTACACAGTAAGCTGTTCCTCTGGTTCTCAT  250

seq1  CCTGCCAAGTGTATTTCCACACACAAGCCCCTGCCACAAAGGTTTGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAAGTGTATTTCCACACACAAGCCCCTGCCACAAAGGTTTGTCCA  300

seq1  GATGCAGTCTTATAATAAAGTTACTCAGAGGCCACAGCTGGGACCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGTCTTATAATAAAGTTACTCAGAGGCCACAGCTGGGACCAAAAG  350

seq1  GAGAGAGTAGGTCCACAAAGGACCTCATAGATGTCCCCATCTGTCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTAGGTCCACAAAGGACCTCATAGATGTCCCCATCTGTCTGGCT  400

seq1  GATGCTGACAATCCAGCCTCTGGGAAGAGATATTACACAAGCATCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGACAATCCAGCCTCTGGGAAGAGATATTACACAAGCATCCTTTG  450

seq1  CTAAGATGCTTGCTCCTCCTCTTTGTGGGAGATGACATTGCACTTACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGCTTGCTCCTCCTCTTTGTGGGAGATGACATTGCACTTACCAC  500

seq1  GTCTGAAGTTCTAAGTTTGCCTGAGCTAACCTCACAGCAACCAGCAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGTTCTAAGTTTGCCTGAGCTAACCTCACAGCAACCAGCAAAAA  550

seq1  TAATAAGTACCGATTCCACAGAAACACTGAGATCAGCTGAGTTACACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTACCGATTCCACAGAAACACTGAGATCAGCTGAGTTACACAGA  600

seq1  GGAACATGCAGGCTTAGTACCTGGAAGAGTCACCTCCTCTTCTGACTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGCAGGCTTAGTACCTGGAAGAGTCACCTCCTCTTCTGACTGGC  650

seq1  AGCTCCATGTGGAGGCTCTAATTCGCTATTGAGTCTTGAGTGAAGTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCATGTGGAGGCTCTAATTCGCTATTGAGTCTTGAGTGAAGTGAAC  700

seq1  ACCAGGCTTAGGGTTAGAGTGTACTGTAGAGATGCAGCCAAGTGGTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTTAGGGTTAGAGTGTACTGTAGAGATGCAGCCAAGTGGTTCCA  750

seq1  GTCTGGGCCAATCCTTTTCCAGATCTGCAGATTTGCAGTTCAGTAGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGCCAATCCTTTTCCAGATCTGCAGATTTGCAGTTCAGTAGCACC  800

seq1  AGTGTGTCTCATCCAATAGTCTATTCTCTCGCTAGCCCTTGGGAGAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTCATCCAATAGTCTATTCTCTCGCTAGCCCTTGGGAGAGGCT  850

seq1  AAGATTCCTGATCCTTGCTGCCTAAGTGCCTGCCTCTCCCCTTTCTGGGC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGATTCCTGATCCTTGCTGCCTAAGTGCCTGCCTCT-CCCTTTCTGGGC  899

seq1  AGTGCCCCTGGGTACACTGCTTTGAAAGTTTGGAGCTTGCCTGAGCTCCA  950
      |||| |||||||||||||||||||||||||||||||||| ||||||||| 
seq2  AGTG-CCCTGGGTACACTGCTTTGAAAGTTTGGAGCTTG-CTGAGCTCC-  946

seq1  ATTCCAGCGCTCAGGAGGCAATTCCCCTTCTTC  983
      ||| ||||||||||||||||||| |||||||||
seq2  ATTTCAGCGCTCAGGAGGCAATT-CCCTTCTTC  978