BAC Information

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BAC

Clone NameB6Ng01-026G10
Chromosome2 (Build37)
Map Location 65,222,677 - 65,362,512
singlet/doubletdoublet
Overlap geneScn3a
Upstream geneLOC620544, LOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik
Downstream geneScn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026G10.bB6Ng01-026G10.g
ACCDH857457DH857458
length1,057960
definitionDH857457|Mus musculus domesticus DNA, BAC clone: B6Ng01-026G10, 5' end.DH857458|Mus musculus domesticus DNA, BAC clone: B6Ng01-026G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,222,677 - 65,223,736)(65,361,991 - 65,362,512)
sequence
gcaacctggacactaggattgggaaagcctcggcacctcagaagctcagt
gtgtttattataggcaactgaacaaggagaaggggcttattctacacagc
tgggtcaaggagacaggtttagctaatctcagtaggagcagcctctgtgg
gagagctgtgatcacacagcaaatatttggaggaagagggcaatgattga
cattttcttcacgtgctgtcaacattcctgttcagatttgaggacatctc
tgccatccctcggagcctcatcctgtcagacagggaaagatctccaccac
agtttacccaccaagctcaccttctgatccttttatcgtcatcgggcctt
tcttacatgtcacagacagaagagtacgacctttgtactctgtttctact
gaaagtgcactctgacttattgcagtctgattatactctcatgtagtgag
tgtttccacaaactgtgtcccagtttgaggctaaaacatggaaaaactca
agtcttaagattcctgaagataacggaatagcaagattggtggctacttc
attcctcatttcacatggatggacccagaatggctctccaaaaaacaccg
agttttagttgtgtgtatctgtagtgtatgtgtgtctctttgtgtgtgtg
cttgtgagtatatgtgtgactgtatgtgtttgtgtgtgtgtactgtgtgt
atttcttttctagtatgacttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttctttcaggagagtatttct
ccatgtagctctggcttctctggaacccactctgtagaccagtctggtct
gaaattcggagagatctacctgcctctgtctcttgagtgctcagattata
tgtgtgtgctaccactgttcagttctcagataacttttacatttacaatt
acgatgtttgacacagaagctgtttcctggctgcctggtgttctctcctc
gaactctttattgctgcttttttcaaaacagaactttttcaaggtagaaa
aaaatct
gaattctttaaaaatttattggtggtggtggtgaatgcacctatgcacaa
ctgcacacatgaaaaggtcagagggcttgtgggagtgacatctcccctac
ctgtgtatcctggagatcacatctaggtaatcaaggtcaaaagcaagcac
cgttatccaatgagtcatctcaccccacactctgctgtgttgttaaagta
aatagtattattatggaatctaattggttattttctatattaacaggcca
cttttatgttttggatggacaaaaagatcctttactttgtggaaatgggt
ccgatgcagggtaagaaggaaatagtaaatagtagatgatgatgatgata
aataataataataatataaaagaggtgggagaaatgccatctatgtaaat
aataaagagtgactgtctctctaggaaatgtagtctctgaaccatagatt
atcactggcaaaagagttttgaaaattcttagagaataaacatagtcaca
ccaccacactgccagatagagagccagctaattacaaaacacattgtacc
cagaaatctgcatgctaccattgtcctcagctgcatacataaatcagtcc
aaattggaaacaggtgagatgtctttgcatctgcaaataaacacaaaacc
tgttgtatgcacatataacgaaacattgttaaatgataaatgaacccgaa
actcatgttcatatgtgagaaagaaaagaaattcaacctgaaaaagctac
acatacaagattctaactatgtgatatctgaaaaggacgaaacaacaaga
gatgacacaaaaatcagggtttaaagggatgataatggggatcaactcag
tgaagcgcagtgtatgtcagtgggaaagtcctctatatgattctgtaatc
ataaatacataaagctattgtcagtcatgggacacagctaaaagtaattg
atcagctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_65222677_65223736
seq2: B6Ng01-026G10.b_54_1110

seq1  GCAACCTGGACACTAGGATTGGGAAAGCCTCGGCACCTCAGAAGCTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTGGACACTAGGATTGGGAAAGCCTCGGCACCTCAGAAGCTCAGT  50

seq1  GTGTTTATTATAGGCAACTGAACAAGGAGAAGGGGCTTATTCTACACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATTATAGGCAACTGAACAAGGAGAAGGGGCTTATTCTACACAGC  100

seq1  TGGGTCAAGGAGACAGGTTTAGCTAATCTCAGTAGGAGCAGCCTCTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAAGGAGACAGGTTTAGCTAATCTCAGTAGGAGCAGCCTCTGTGG  150

seq1  GAGAGCTGTGATCACACAGCAAATATTTGGAGGAAGAGGGCAATGATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGTGATCACACAGCAAATATTTGGAGGAAGAGGGCAATGATTGA  200

seq1  CATTTTCTTCACGTGCTGTCAACATTCCTGTTCAGATTTGAGGACATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTCACGTGCTGTCAACATTCCTGTTCAGATTTGAGGACATCTC  250

seq1  TGCCATCCCTCGGAGCCTCATCCTGTCAGACAGGGAAAGATCTCCACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCCTCGGAGCCTCATCCTGTCAGACAGGGAAAGATCTCCACCAC  300

seq1  AGTTTACCCACCAAGCTCACCTTCTGATCCTTTTATCGTCATCGGGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACCCACCAAGCTCACCTTCTGATCCTTTTATCGTCATCGGGCCTT  350

seq1  TCTTACATGTCACAGACAGAAGAGTACGACCTTTGTACTCTGTTTCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATGTCACAGACAGAAGAGTACGACCTTTGTACTCTGTTTCTACT  400

seq1  GAAAGTGCACTCTGACTTATTGCAGTCTGATTATACTCTCATGTAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCACTCTGACTTATTGCAGTCTGATTATACTCTCATGTAGTGAG  450

seq1  TGTTTCCACAAACTGTGTCCCAGTTTGAGGCTAAAACATGGAAAAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCACAAACTGTGTCCCAGTTTGAGGCTAAAACATGGAAAAACTCA  500

seq1  AGTCTTAAGATTCCTGAAGATAACGGAATAGCAAGATTGGTGGCTACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAAGATTCCTGAAGATAACGGAATAGCAAGATTGGTGGCTACTTC  550

seq1  ATTCCTCATTTCACATGGATGGACCCAGAATGGCTCTCCAAAAAACACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCATTTCACATGGATGGACCCAGAATGGCTCTCCAAAAAACACCG  600

seq1  AGTTTTAGTTGTGTGTATCTGTAGTGTATGTGTGTCTCTTTGTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGTTGTGTGTATCTGTAGTGTATGTGTGTCTCTTTGTGTGTGTG  650

seq1  CTTGTGAGTATATGTGTGACTGTATGTGTTTGTGTGTGTGTACTGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGTATATGTGTGACTGTATGTGTTTGTGTGTGTGTACTGTGTGT  700

seq1  ATTTCTTTTCTAGTATGACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTCTAGTATGACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  750

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCAGGAGAGTATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCAGGAGAGTATTTCT  800

seq1  CCATGTAGCTCTGGCTTCTCTGGAACCCACTCTGTAGACCAGTCTGGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAGCTCTGGCTTCTCTGGAACCCACTCTGTAGACCAGTCTGGTCT  850

seq1  GAAATTCGGAGAGATCTACCTGCCTCTGTCTCTTGAGTGCTCAGATTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCGGAGAGATCTACCTGCCTCTGTCTCTTGAGTGCTCAGATTATA  900

seq1  TGTGTGTGCTACCACTGTTCAGTTCTCAGATAACTTTTACATTTACAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCTACCACTGTTCAGTTCTCAGATAACTTTTACATTTACAATT  950

seq1  ACGATGTTTGACACAGAAGCTGTTTCCTGGCTGCCT-GTGTTCTCTTCCT  999
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  ACGATGTTTGACACAGAAGCTGTTTCCTGGCTGCCTGGTGTTCTC-TCCT  999

seq1  CGAACCCTTTATTGCTGCCTTTTTACAAAACCAGACCTTTTTCAAGGTAA  1049
      ||||| ||||||||||| |||||| ||||| |||| |||||||||||| |
seq2  CGAACTCTTTATTGCTG-CTTTTTTCAAAA-CAGAACTTTTTCAAGGT-A  1046

seq1  GATAAAAATCT  1060
      || ||||||||
seq2  GAAAAAAATCT  1057

seq1: chr2_65361991_65362512
seq2: B6Ng01-026G10.g_68_589 (reverse)

seq1  TCTCTATCTGGCAGTGTGGTGGTGTGACTATGTTTATTCTCTAAGAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTGGCAGTGTGGTGGTGTGACTATGTTTATTCTCTAAGAATTT  50

seq1  TCAAAACTCTTTTGCCAGTGATAATCTATGGTTCAGAGACTACATTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTCTTTTGCCAGTGATAATCTATGGTTCAGAGACTACATTTCCT  100

seq1  AGAGAGACAGTCACTCTTTATTATTTACATAGATGGCATTTCTCCCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGTCACTCTTTATTATTTACATAGATGGCATTTCTCCCACCT  150

seq1  CTTTTATATTATTATTATTATTTATCATCATCATCATCTACTATTTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATTATTATTATTATTTATCATCATCATCATCTACTATTTACTA  200

seq1  TTTCCTTCTTACCCTGCATCGGACCCATTTCCACAAAGTAAAGGATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTTACCCTGCATCGGACCCATTTCCACAAAGTAAAGGATCTTT  250

seq1  TTGTCCATCCAAAACATAAAAGTGGCCTGTTAATATAGAAAATAACCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATCCAAAACATAAAAGTGGCCTGTTAATATAGAAAATAACCAAT  300

seq1  TAGATTCCATAATAATACTATTTACTTTAACAACACAGCAGAGTGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCCATAATAATACTATTTACTTTAACAACACAGCAGAGTGTGGGG  350

seq1  TGAGATGACTCATTGGATAACGGTGCTTGCTTTTGACCTTGATTACCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGACTCATTGGATAACGGTGCTTGCTTTTGACCTTGATTACCTAG  400

seq1  ATGTGATCTCCAGGATACACAGGTAGGGGAGATGTCACTCCCACAAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCTCCAGGATACACAGGTAGGGGAGATGTCACTCCCACAAGCCC  450

seq1  TCTGACCTTTTCATGTGTGCAGTTGTGCATAGGTGCATTCACCACCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTTTTCATGTGTGCAGTTGTGCATAGGTGCATTCACCACCACCA  500

seq1  CCAATAAATTTTTAAAGAATTC  522
      ||||||||||||||||||||||
seq2  CCAATAAATTTTTAAAGAATTC  522