BAC Information

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BAC

Clone NameB6Ng01-026J16
Chromosome2 (Build37)
Map Location 180,749,318 - 180,750,416
singlet/doubletsinglet
Overlap geneCol20a1
Upstream geneLsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1
Downstream geneChrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026J16.b
ACCDH857602
length1,087
definitionDH857602|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J16, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcttcagcacatgtgctggggaaggagacatcagatggggccc
agctgatttctcatccgcaaggatgaggctgggcagggtgggtttcactc
actccgtatggctgactcgcaggcctggctcaccagctggaagatggtgg
caagggactgtggctctccctagaaagaggacgtgatttgggaacccatg
acaggtgtcacaagggagccccaatctccagattgtgggcctcacccacc
ttctctcctcgttcacctttggaccctggtagaccctgtagcaggataaa
gggaaaaggctgtcagcatagaggcagggagctgcaggcgtggcaacatg
ggtggatgtggtggcaggttccagatgtgtatgtctgccctcagttccag
cccagaatgagcaagcgaggctggacatccacagagacagctccaagtgg
atctgggaacgatctgcaaagaatctatccccagccgtgcattttgtgct
ggggaggataggcagagctcccaaacaggtgaaacactgtctagagaaca
gaccctcccttggcccagaggcagggctgagccaagaaagccacatcatc
ctgcttctccttcagctgtgcccacactatagagcccacttcaggggctc
taagctgctgagaccctatttctcttgactgaagattaaaggtgaccttc
taaggagctggctcctcataagtcagctgctgactccttccaactctgtg
ccccatggaagccacaggaagctctgagcaggcagatcttcaatcaggga
ggtccctgttgtttggctgcctagctggaggtatgtgtgagggggtactt
actgtgggacccacagctcctggggctcctcgctccccattggtgccctg
gcccctgccaagccctggaacccctgcaaaaatgcagatattagagttga
gcccaggagtccattccccttgtcctgcttgatatcacagttcccatggc
cagcgaagttaaatctagatgctcgcaggcttgccttcttcctacatgtc
tgaatttgttcctaacagggtctataagacaaccttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180749318_180750416
seq2: B6Ng01-026J16.b_48_1134 (reverse)

seq1  AAAGGTTGTCTTATAGACACTGGTTTGGGGACAGAACTCAGAACATGCTA  50
      |||||||||||||||||| |||  || || ||| || |||| ||||| ||
seq2  AAAGGTTGTCTTATAGACCCTG--TTAGGAACA-AATTCAG-ACATG-TA  45

seq1  GGGAGGAGGGCAAGGCCTGCGAGCAGCTAGAATTAACCTCGCTGGGCACT  100
       ||| || ||||| ||||||||||| ||||| ||||| ||||||| ||  
seq2  -GGAAGAAGGCAA-GCCTGCGAGCATCTAGATTTAACTTCGCTGGCCATG  93

seq1  GGGACTGTGGATATCAAGCCAGGAC-AGGGGAATGGACTCCTTGGGCCTC  149
      || ||||| ||||||||| |||||| ||||||||||||||||  || |||
seq2  GGAACTGT-GATATCAAG-CAGGACAAGGGGAATGGACTCCT--GGGCTC  139

seq1  AAACTCTAATATCTGCATTTTTGCAGGGGTTCCAGGGCTTGGCAGGGGCC  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACTCTAATATCTGCATTTTTGCAGGGGTTCCAGGGCTTGGCAGGGGCC  188

seq1  AGGGGCACCAATGGGGAGCGAGGAGCCCCAGGAGCTGTGGGTCCCACAGT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GGGCACCAATGGGGAGCGAGGAGCCCCAGGAGCTGTGGGTCCCACAGT  237

seq1  AAGTACCCCCTCACACATACCTCCAGCTAGGCAGCCAAACAACAGGGACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCCCCTCACACATACCTCCAGCTAGGCAGCCAAACAACAGGGACC  287

seq1  TCCCTGATTGAAGATCTGCCTGCTCAGAGCTTCCTGTGGCTTCCATGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTGAAGATCTGCCTGCTCAGAGCTTCCTGTGGCTTCCATGGGG  337

seq1  CACAGAGTTGGAAGGAGTCAGCAGCTGACTTATGAGGAGCCAGCTCCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTTGGAAGGAGTCAGCAGCTGACTTATGAGGAGCCAGCTCCTTA  387

seq1  GAAGGTCACCTTTAATCTTCAGTCAAGAGAAATAGGGTCTCAGCAGCTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCACCTTTAATCTTCAGTCAAGAGAAATAGGGTCTCAGCAGCTTA  437

seq1  GAGCCCCTGAAGTGGGCTCTATAGTGTGGGCACAGCTGAAGGAGAAGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTGAAGTGGGCTCTATAGTGTGGGCACAGCTGAAGGAGAAGCAG  487

seq1  GATGATGTGGCTTTCTTGGCTCAGCCCTGCCTCTGGGCCAAGGGAGGGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTGGCTTTCTTGGCTCAGCCCTGCCTCTGGGCCAAGGGAGGGTC  537

seq1  TGTTCTCTAGACAGTGTTTCACCTGTTTGGGAGCTCTGCCTATCCTCCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTAGACAGTGTTTCACCTGTTTGGGAGCTCTGCCTATCCTCCCC  587

seq1  AGCACAAAATGCACGGCTGGGGATAGATTCTTTGCAGATCGTTCCCAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAAATGCACGGCTGGGGATAGATTCTTTGCAGATCGTTCCCAGAT  637

seq1  CCACTTGGAGCTGTCTCTGTGGATGTCCAGCCTCGCTTGCTCATTCTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGAGCTGTCTCTGTGGATGTCCAGCCTCGCTTGCTCATTCTGGG  687

seq1  CTGGAACTGAGGGCAGACATACACATCTGGAACCTGCCACCACATCCACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTGAGGGCAGACATACACATCTGGAACCTGCCACCACATCCACC  737

seq1  CATGTTGCCACGCCTGCAGCTCCCTGCCTCTATGCTGACAGCCTTTTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGCCACGCCTGCAGCTCCCTGCCTCTATGCTGACAGCCTTTTCCC  787

seq1  TTTATCCTGCTACAGGGTCTACCAGGGTCCAAAGGTGAACGAGGAGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTGCTACAGGGTCTACCAGGGTCCAAAGGTGAACGAGGAGAGAA  837

seq1  GGTGGGTGAGGCCCACAATCTGGAGATTGGGGCTCCCTTGTGACACCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGAGGCCCACAATCTGGAGATTGGGGCTCCCTTGTGACACCTGT  887

seq1  CATGGGTTCCCAAATCACGTCCTCTTTCTAGGGAGAGCCACAGTCCCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTTCCCAAATCACGTCCTCTTTCTAGGGAGAGCCACAGTCCCTTG  937

seq1  CCACCATCTTCCAGCTGGTGAGCCAGGCCTGCGAGTCAGCCATACGGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCTTCCAGCTGGTGAGCCAGGCCTGCGAGTCAGCCATACGGAGT  987

seq1  GAGTGAAACCCACCCTGCCCAGCCTCATCCTTGCGGATGAGAAATCAGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAACCCACCCTGCCCAGCCTCATCCTTGCGGATGAGAAATCAGCT  1037

seq1  GGGCCCCATCTGATGTCTCCTTCCCCAGCACATGTGCTGAAGCTGAATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCATCTGATGTCTCCTTCCCCAGCACATGTGCTGAAGCTGAATTC  1087