BAC Information

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BAC

Clone NameB6Ng01-026O22
Chromosome2 (Build37)18 (Build37)
Map Location 80,331,365 - 80,331,86919,892,277 - 19,893,354
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026O22.bB6Ng01-026O22.g
ACCDH857819DH857820
length5901,064
definitionDH857819|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O22, 5' end.DH857820|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,331,365 - 80,331,869)(19,892,277 - 19,893,354)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttgaattttg
tcaaatgctttctccacatgtaatgagatgatcatgtggtttttgttttt
gagtttgtttatataatgtattaggttgatggatttctgtatattaaacc
atccatgcatccctggaatgaaatctagttggtcaggatggatgattgtt
ttgatatgttcttggattcggttagcgagaattttattgagtacttttgc
atcaatattcataagggtaattggtctgaagttctctatctttggtcgat
ctttctgtggtttaggtatcagagtaattgtggcttcgaagaaagaattg
gatagaataccttctgcttctattttgtggaatagtttgtgaagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggcttttttttttttttttttggttgggagactattaatgactg
cttctatttctttaggggatataggattgtttagatcattaacctgatcc
tgatttatctttggtacctggtatctgtctagaaatttgt
gaattcataaaacctcagcattagtgatactatggtataatggagatagg
ccacaaaatgtttgctatgaactacccaatttcacctttagcaataatca
aaacatctggaaaagtattatttggaagtccatttgggtattttaagaag
ttaatattaagaaattggaagcagaactaaggagttgctaccaaggagag
gtatccatagttgatgtgatataaaaaatgttgatgatcatgatcaaaga
acatataatacaacaaaggtcaaataacagaactcatgtttgtaaagact
ctatggaaagcaatgggctactcaatcaaagctgcttagaaagcaggtga
atgattagaaagactgaagtctttggttgtttttgcgtcatgtagtgggt
cccatcttccttggtgtactggtatgctataccctgaggaaccattcaat
actcctgtcatagttcacatttaaaattctaagaaactgtgataatgcaa
gtctttatttgacaggatcagatctatttctgtttttatctgaacatcaa
agctgtaattggatagcttttaatattcagaacaaaaatgtccaagtatt
acactgatgtttttataacatttttattctgatatgtctcatgtttaaag
gcaataaatgtaaaagtattgtgtgtcacaagtacagagtaattgttagc
acttggctataatagtagaattcatgatacctaacattttagctaccaga
aatgataatatgcatcattatctcatttgagcctcataattatgccctaa
attatggatgaatataaaataattttaatgaaaattactccccaaattcc
catatttcagaaatacaaacatctcacacaatcaaatgttgtctttaaaa
acatactggaaatataagctgaaaaggatttcaccatgaatcctcagaaa
attttcttcagcaatgcttagaaaaagcgtggtctagtcgtggattctct
atacagtagctagtgtgtgtctattttagacaagctagaatcacatctgt
acaaataatatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80331365_80331869
seq2: B6Ng01-026O22.b_124_639 (reverse)

seq1  ACAAATTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTT  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACAAATTTCTAGACAGATACCAGGTACCAAAGATAAATCAGGATCAGGTT  50

seq1  AATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGCCATTAA  100
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  AATGATCTAAACAATCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAA  100

seq1  TAGTCTCCCAACC-----------AAAAAAAGCCCAGGACCAGATGGGTT  139
      |||||||||||||           ||||||||||||||||||||||||||
seq2  TAGTCTCCCAACCAAAAAAAAAAAAAAAAAAGCCCAGGACCAGATGGGTT  150

seq1  TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTC  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTC  200

seq1  ACAAACAATTCCACAAAATAGAAGCAGAAGGTACTCTACCCAATTCATTC  239
      |||||| |||||||||||||||||||||||||| |||| ||||||| |||
seq2  ACAAACTATTCCACAAAATAGAAGCAGAAGGTATTCTATCCAATTCTTTC  250

seq1  TATGAAGCCACAATTACTCTGATACCTAAACCACAGAAAGACCCAACAAA  289
      |  |||||||||||||||||||||||||||||||||||||| | | ||||
seq2  TTCGAAGCCACAATTACTCTGATACCTAAACCACAGAAAGATCGACCAAA  300

seq1  GATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGATAAAATAC  339
      |||||||||||||||||||||| ||||||||||||| ||||  ||| |||
seq2  GATAGAGAACTTCAGACCAATTACCCTTATGAATATTGATGCAAAAGTAC  350

seq1  TCAATAAAATTCTCGCTAACCAAATCCAAGAACACATCAAAACCATCATC  389
      ||||||||||||||||||||| |||||||||||| |||||||| ||||||
seq2  TCAATAAAATTCTCGCTAACCGAATCCAAGAACATATCAAAACAATCATC  400

seq1  CATCCTGACCAAGTAGGTTTCATTCCAGGGATGCAGGGATGGTTTAATAT  439
      |||||||||||| ||| |||||||||||||||||| ||||||||||||||
seq2  CATCCTGACCAACTAGATTTCATTCCAGGGATGCATGGATGGTTTAATAT  450

seq1  ATGGAAATTCATCAACGTAATCCACTATATAAACAAACTCAAAGACAAAA  489
      |  ||||| ||||||| |||| || |||||||||||||||||| ||||||
seq2  ACAGAAATCCATCAACCTAATACATTATATAAACAAACTCAAAAACAAAA  500

seq1  ACCACATGATCATCTC  505
      ||||||||||||||||
seq2  ACCACATGATCATCTC  516

seq1: chr18_19892277_19893354
seq2: B6Ng01-026O22.g_64_1127

seq1  GAATTCATAAAACCTCAGCATTAGTGATACTATGGTATAATGGAGATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAACCTCAGCATTAGTGATACTATGGTATAATGGAGATAGG  50

seq1  CCACAAAATGTTTGCTATGAACTACCCAATTTCACCTTTAGCAATAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATGTTTGCTATGAACTACCCAATTTCACCTTTAGCAATAATCA  100

seq1  AAACATCTGGAAAAGTATTATTTGGAAGTCCATTTGGGTATTTTAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTGGAAAAGTATTATTTGGAAGTCCATTTGGGTATTTTAAGAAG  150

seq1  TTAATATTAAGAAATTGGAAGCAGAACTAAGGAGTTGCTACCAAGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTAAGAAATTGGAAGCAGAACTAAGGAGTTGCTACCAAGGAGAG  200

seq1  GTATCCATAGTTGATGTGATATAAAAAATGTTGATGATCATGATCAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATAGTTGATGTGATATAAAAAATGTTGATGATCATGATCAAAGA  250

seq1  ACATATAATACAACAAAGGTCAAATAACAGAACTCATGTTTGTAAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAATACAACAAAGGTCAAATAACAGAACTCATGTTTGTAAAGACT  300

seq1  CTATGGAAAGCAATGGGCTACTCAATCAAAGCTGCTTAGAAAGCAGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAAGCAATGGGCTACTCAATCAAAGCTGCTTAGAAAGCAGGTGA  350

seq1  ATGATTAGAAAGACTGAAGTCTTTGGTTGTTTTTGCGTCATGTAGTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGAAAGACTGAAGTCTTTGGTTGTTTTTGCGTCATGTAGTGGGT  400

seq1  CCCATCTTCCTTGGTGTACTGGTATGCTATACCCTGAGGAACCATTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTCCTTGGTGTACTGGTATGCTATACCCTGAGGAACCATTCAAT  450

seq1  ACTCCTGTCATAGTTCACATTTAAAATTCTAAGAAACTGTGATAATGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTCATAGTTCACATTTAAAATTCTAAGAAACTGTGATAATGCAA  500

seq1  GTCTTTATTTGACAGGATCAGATCTATTTCTGTTTTTATCTGAACATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTTGACAGGATCAGATCTATTTCTGTTTTTATCTGAACATCAA  550

seq1  AGCTGTAATTGGATAGCTTTTAATATTCAGAACAAAAATGTCCAAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAATTGGATAGCTTTTAATATTCAGAACAAAAATGTCCAAGTATT  600

seq1  ACACTGATGTTTTTATAACATTTTTATTCTGATATGTCTCATGTTTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATGTTTTTATAACATTTTTATTCTGATATGTCTCATGTTTAAAG  650

seq1  GCAATAAATGTAAAAGTATTGTGTGTCACAAGTACAGAGTAATTGTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAATGTAAAAGTATTGTGTGTCACAAGTACAGAGTAATTGTTAGC  700

seq1  ACTTGGCTATAATAGTAGAATTCATGATACCTAACATTTTAGCTACCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTATAATAGTAGAATTCATGATACCTAACATTTTAGCTACCAGA  750

seq1  AATGATAATATGCATCATTATCTCATTTGAGCCTCATAATTATGCCCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATATGCATCATTATCTCATTTGAGCCTCATAATTATGCCCTAA  800

seq1  ATTATGGATGAATATAAAATAATTTTAATGAAAATTACTCCCCAAATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGATGAATATAAAATAATTTTAATGAAAATTACTCCCCAAATTCC  850

seq1  CATATTTCAGAAATACAAACATCTCACACAATCAAAATGTTGTCTTTAAA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATATTTCAGAAATACAAACATCTCACACAATC-AAATGTTGTCTTTAAA  899

seq1  AACATACTGGAAATATAAGCTGAAAAGGATTTCAACAATGAATCCATCAG  950
      ||||||||||||||||||||||||||||||||| || |||||||| ||||
seq2  AACATACTGGAAATATAAGCTGAAAAGGATTTC-ACCATGAATCC-TCAG  947

seq1  AAAATTTTCCTCAGCAAATGCTTAGAAAAAGCGTGTCTTAGTCGTGTATT  1000
      ||||||||| ||||| |||||||||||||||||||   |||||||| |||
seq2  AAAATTTTCTTCAGC-AATGCTTAGAAAAAGCGTGGTCTAGTCGTGGATT  996

seq1  CTCTATACAGTAGCTAGTTGTGTGTCTATTTTTAAGACCAGTGCTTAGAA  1050
      ||||||||||||||||| ||||||||||||||  |||| ||    |||||
seq2  CTCTATACAGTAGCTAG-TGTGTGTCTATTTT--AGACAAG---CTAGAA  1040

seq1  TCACCATCCTGTACAAATTAATTATGGT  1078
      ||| ||| ||||||||||  | ||||||
seq2  TCA-CAT-CTGTACAAAT--AATATGGT  1064