BAC Information

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BAC

Clone NameB6Ng01-027A05
Chromosome2 (Build37)
Map Location 163,285,742 - 163,450,873
singlet/doubletdoublet
Overlap geneD930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1
Downstream genePkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027A05.bB6Ng01-027A05.g
ACCDH857878DH857879
length855185
definitionDH857878|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A05, 5' end.DH857879|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,450,025 - 163,450,873)(163,285,742 - 163,285,926)
sequence
gaattctttataaagacctgtagattcctacaactttggtttaagtttta
agttagaagattgttggatatttaaggctatttttaatttctattacagt
ctccttaaaaaccaaaaaggaatgcattaatccacatttcccttcttcag
aggtgtagtgtcctggctcttggcaaggaattatgtatttaggtcagtcc
ccagaaatgcagctgctcatacagctgagagaaggctattattgagttcc
tttacttactttttatactacactgatgctgcttgatagaagtctgtggc
tttgtcagatatgtcacccaagtaaatgctttgtagatctgattaaaatg
aaaagctcacttgagaaacactgcagagttatgtaatgatcttgttgtga
gtgtgtgaaagtcaaaggcatgtcagtttattacatttgcaacataaaag
tacttaattaaaatagatatttagtttcttgtttgtttgtgtatttgttt
agaaagggtcttttccacataacccagacttgcttggaatgcagatcatc
ctatctccacttccaagtactgaggaggaggtttctatcaccatagctag
tcttttcttaaagatccttctgcagtggggttgataggtttttcttttat
tgttgttttcttgtttagagagttcccaaatcaatctgacatttcaggca
aaatgctcctcttctaacacttaagatttgactagtcaagttttttaagt
tcatttagaaactaccctaaatatttttctctgggggaagatcaaagtag
gtagaaacagtttatgcactgttaaaaaagatattccttgaaaagcattg
tgcat
tcgggtgtcttaacaggaaagacacaaccgagcaagtgaaggagccccac
tagcaagatgagtggcagacacttgtgaggtccctcctccacaccctcgt
tcagtccaggctgtcgcttggccaccactgcacggcctccaactatatgg
acaaaacttaacctcggaggcgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163450025_163450873
seq2: B6Ng01-027A05.b_44_897 (reverse)

seq1  TGCACACTGCTTTTC-AGGAATATCTTTTTTGACAGTGCCTAAACTGTTT  49
      |||||| |||||||| ||||||||||||||| ||||||| ||||||||||
seq2  TGCACAATGCTTTTCAAGGAATATCTTTTTTAACAGTGCATAAACTGTTT  50

seq1  CTTACCTACTTTGATCTT-CCCCAGAG-AAAATATTTAGGGTAGTTTCTA  97
      | |||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  C-TACCTACTTTGATCTTCCCCCAGAGAAAAATATTTAGGGTAGTTTCTA  99

seq1  AATGAACTT-AAAAACTTGACTAGTCAAATCTTAAGTGTTAGAAGAGGAG  146
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTTAAAAAACTTGACTAGTCAAATCTTAAGTGTTAGAAGAGGAG  149

seq1  CATTTTGCCTGAAATGTCAGATTGATTTGGG-ACTCTCTAAACAAGAAAA  195
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATTTTGCCTGAAATGTCAGATTGATTTGGGAACTCTCTAAACAAGAAAA  199

seq1  CAACAATAAAAG-AAAACCTATCAACCCCACTGCAGAAGGATCTTTAAGA  244
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAACAATAAAAGAAAAACCTATCAACCCCACTGCAGAAGGATCTTTAAGA  249

seq1  AAAGACTAGCTATGGTGATAGAAACCTCCTCCTCAGTACTTGGAAGTGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAGCTATGGTGATAGAAACCTCCTCCTCAGTACTTGGAAGTGGA  299

seq1  GATAGGATGATCTGCATTCCAAGCAAGTCTGGGTTATGTGGAAAAGACCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGATGATCTGCATTCCAAGCAAGTCTGGGTTATGTGGAAAAGACCC  349

seq1  TTTCTAAACAAATACACAAACAAACAAGAAACTAAATATCTATTTTAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAACAAATACACAAACAAACAAGAAACTAAATATCTATTTTAATT  399

seq1  AAGTACTTTTATGTTGCAAATGTAATAAACTGACATGCCTTTGACTTTCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTTTATGTTGCAAATGTAATAAACTGACATGCCTTTGACTTTCA  449

seq1  CACACTCACAACAAGATCATTACATAACTCTGCAGTGTTTCTCAAGTGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACAACAAGATCATTACATAACTCTGCAGTGTTTCTCAAGTGAG  499

seq1  CTTTTCATTTTAATCAGATCTACAAAGCATTTACTTGGGTGACATATCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTTTAATCAGATCTACAAAGCATTTACTTGGGTGACATATCTG  549

seq1  ACAAAGCCACAGACTTCTATCAAGCAGCATCAGTGTAGTATAAAAAGTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCACAGACTTCTATCAAGCAGCATCAGTGTAGTATAAAAAGTAA  599

seq1  GTAAAGGAACTCAATAATAGCCTTCTCTCAGCTGTATGAGCAGCTGCATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAACTCAATAATAGCCTTCTCTCAGCTGTATGAGCAGCTGCATT  649

seq1  TCTGGGGACTGACCTAAATACATAATTCCTTGCCAAGAGCCAGGACACTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGACTGACCTAAATACATAATTCCTTGCCAAGAGCCAGGACACTA  699

seq1  CACCTCTGAAGAAGGGAAATGTGGATTAATGCATTCCTTTTTGGTTTTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGAAGAAGGGAAATGTGGATTAATGCATTCCTTTTTGGTTTTTA  749

seq1  AGGAGACTGTAATAGAAATTAAAAATAGCCTTAAATATCCAACAATCTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGTAATAGAAATTAAAAATAGCCTTAAATATCCAACAATCTTC  799

seq1  TAACTTAAAACTTAAACCAAAGTTGTAGGAATCTACAGGTCTTTATAAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAAAACTTAAACCAAAGTTGTAGGAATCTACAGGTCTTTATAAAG  849

seq1  AATTC  849
      |||||
seq2  AATTC  854

seq1: chr2_163285742_163285926
seq2: B6Ng01-027A05.g_72_256

seq1  TCGGGTGTCTTAACAGGAAAGACACAACCGAGCAAGTGAAGGAGCCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTGTCTTAACAGGAAAGACACAACCGAGCAAGTGAAGGAGCCCCAC  50

seq1  TAGCAAGATGAGTGGCAGACACTTGTGAGGTCCCTCCTCCACACCCTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGATGAGTGGCAGACACTTGTGAGGTCCCTCCTCCACACCCTCGT  100

seq1  TCAGTCCAGGCTGTCGCTTGGCCACCACTGCACGGCCTCCAACTATATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCAGGCTGTCGCTTGGCCACCACTGCACGGCCTCCAACTATATGG  150

seq1  ACAAAACTTAACCTCGGAGGCGGGGGGGGGGGGGG  185
      |||||||||||||||||||||||||||||||||||
seq2  ACAAAACTTAACCTCGGAGGCGGGGGGGGGGGGGG  185