BAC Information

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BAC

Clone NameB6Ng01-027A23
Chromosome2 (Build37)
Map Location 153,298,850 - 153,491,280
singlet/doubletdoublet
Overlap gene8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b
Upstream gene9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1
Downstream geneLOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027A23.bB6Ng01-027A23.g
ACCDH857909DH857910
length1,018578
definitionDH857909|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A23, 5' end.DH857910|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,298,850 - 153,299,872)(153,490,706 - 153,491,280)
sequence
gaattcactttaattttcttaaagggtaaggttatctggcatgaagttgc
taaacaatatggaggctgcaaagggccacccaccccccaatggccctgct
catacaggggatctctgctcttggccgtccacacagggcagatgacctga
tgtaacttaacttacatcatacctgaatgccagggatggttatcaaaaag
cactaataaagccgataacagtttggcttaggaggaaaaccccaaaagaa
cagtgtctaggatggtgatctggagcagaaaaagggtcttccctggtctg
tgctccccagcatctctgcaaatctgaagatgcttctggggcctcagaag
agccaggagagctgaaagagggtgacaagatgcctgtggcagggaagcag
gcaaacaaagctatcggggaacacctgtgctggtgggcagaccagagtga
acaccctgttggggcagcagtgccaacctaggcagggcatatgtccaggg
agaaagggggccacagagatggtatgggaggtcagaactggcttaccaca
gtgaggaggatggcagaagagctggaggaaccccttaatctctggatatg
gtgagtggaacaacagcagatgcaaaccaatggtgccccagtgtggggag
gatgccatgccaggcaagttaaagcagagtgtaaatgtgaaaagggggat
tgcctgggttgtttggacagtgaggtcctctgtgccaacacatgtggtgg
tcatgcccaggccactgaaaacagcctaatgccactgctgcattgggcac
tgttactatggtgagaggagagttaagagctatcatcaacatggaggcta
agtgatccagcaggctgctacgatgagaggctgagaaagggccacccagt
aatgttttaataccttttaatacctcctttcaagaaaaatggaaaccagc
ccacgtgttcagctgattcttggggcttgggaaaggttcatatcttgggc
tctgcctagataagacag
gaattcttgtctcctcaaagtagctccaagtaggacgactcagaacagaa
agtaagaagccagaccctggaaagcaggagcgtgtgaagaaagtacacgc
tacatacaacgatgttgtgttgtggggagtgaatgaagcagatcttgaga
tcagagatgggaccaaccctggtagccggaaactccacagggtactcctg
cacatggtggcggccctgccgacctcgggtgattctgggggaggctcttt
gcctctccaagctggaggtcccattgctatgtcgggttcggacctgaaag
tgagaaaggataaatactggaccttaggtgaacagctgcatggggcccaa
aggctcccaaaggaataagatcttgagacggcctcaaatcaacctgaagt
gaagaagaccactggatgtcatctcagggatacctttcaacaagggtatc
tttgcaggagactatcagacttgttccacgtcacaacacagatttggccc
tcctgaactggcaacagcgaatgggggacttaattattgcttgccctcct
aatgctgtatgtattttctcatattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153298850_153299872
seq2: B6Ng01-027A23.b_39_1056

seq1  GAATTCACTTTAATTTTCTTAAAGGGTAAGGTTATCTGGCATGAAGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTAATTTTCTTAAAGGGTAAGGTTATCTGGCATGAAGTTGC  50

seq1  TAAACAATATGGAGGCTGCAAAGGGCCACCCACCCCCCAATGGCCCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATATGGAGGCTGCAAAGGGCCACCCACCCCCCAATGGCCCTGCT  100

seq1  CATACAGGGGATCTCTGCTCTTGGCCGTCCACACAGGGCAGATGACCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGGGATCTCTGCTCTTGGCCGTCCACACAGGGCAGATGACCTGA  150

seq1  TGTAACTTAACTTACATCATACCTGAATGCCAGGGATGGTTATCAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTAACTTACATCATACCTGAATGCCAGGGATGGTTATCAAAAAG  200

seq1  CACTAATAAAGCCGATAACAGTTTGGCTTAGGAGGAAAACCCCAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATAAAGCCGATAACAGTTTGGCTTAGGAGGAAAACCCCAAAAGAA  250

seq1  CAGTGTCTAGGATGGTGATCTGGAGCAGAAAAAGGGTCTTCCCTGGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTAGGATGGTGATCTGGAGCAGAAAAAGGGTCTTCCCTGGTCTG  300

seq1  TGCTCCCCAGCATCTCTGCAAATCTGAAGATGCTTCTGGGGCCTCAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCAGCATCTCTGCAAATCTGAAGATGCTTCTGGGGCCTCAGAAG  350

seq1  AGCCAGGAGAGCTGAAAGAGGGTGACAAGATGCCTGTGGCAGGGAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGAGAGCTGAAAGAGGGTGACAAGATGCCTGTGGCAGGGAAGCAG  400

seq1  GCAAACAAAGCTATCGGGGAACACCTGTGCTGGTGGGCAGACCAGAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAAGCTATCGGGGAACACCTGTGCTGGTGGGCAGACCAGAGTGA  450

seq1  ACACCCTGTTGGGGCAGCAGTGCCAACCTAGGCAGGGCATATGTCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGTTGGGGCAGCAGTGCCAACCTAGGCAGGGCATATGTCCAGGG  500

seq1  AGAAAGGGGGCCACAGAGATGGTATGGGAGGTCAGAACTGGCTTACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGGCCACAGAGATGGTATGGGAGGTCAGAACTGGCTTACCACA  550

seq1  GTGAGGAGGATGGCAGAAGAGCTGGAGGAACCCCTTAATCTCTGGATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGGATGGCAGAAGAGCTGGAGGAACCCCTTAATCTCTGGATATG  600

seq1  GTGAGTGGAACAACAGCAGATGCAAACCAATGGTGCCCCAGTGTGGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGAACAACAGCAGATGCAAACCAATGGTGCCCCAGTGTGGGGAG  650

seq1  GATGCCATGCCAGGCAAGTTAAAGCAGAGTGTAAATGTGAAAAGGGGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATGCCAGGCAAGTTAAAGCAGAGTGTAAATGTGAAAAGGGGGAT  700

seq1  TGCCTGGGTTGTTTGGACAGTGAGGTCCTCTGTGCCAACACATGTGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGTTGTTTGGACAGTGAGGTCCTCTGTGCCAACACATGTGGTGG  750

seq1  TCATGCCCAGGCCACTGAAAACAGCCTAATGCCACTGCTGCATTGGGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCCAGGCCACTGAAAACAGCCTAATGCCACTGCTGCATTGGGCAC  800

seq1  TGTTACTATGGTGAGAGGAGAGTTAAGAGCTATCATCAACATGGAGGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTATGGTGAGAGGAGAGTTAAGAGCTATCATCAACATGGAGGCTA  850

seq1  AGTGATCCAGCAGGCTGCTACGAAGAGAGGCTGAGAAAGGGCCACCCAGT  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTGATCCAGCAGGCTGCTACGATGAGAGGCTGAGAAAGGGCCACCCAGT  900

seq1  AATGTTTTAATACCTTTTAATACCTCCTTTCCAAGAAAAATGGAAACCAG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATGTTTTAATACCTTTTAATACCTCCTTT-CAAGAAAAATGGAAACCAG  949

seq1  CCCACGTGCTCAGCCTGATTCTTTGGGGCTTGGGAAAGGTTCAATAACTT  1000
      |||||||| |||| ||||||| |||||||||||||||||||| ||| |||
seq2  CCCACGTGTTCAG-CTGATTC-TTGGGGCTTGGGAAAGGTTC-ATATCTT  996

seq1  GGGCTCTGCCTAAGATAAGACAG  1023
      ||||||||||| |||||||||||
seq2  GGGCTCTGCCT-AGATAAGACAG  1018

seq1: chr2_153490706_153491280
seq2: B6Ng01-027A23.g_69_645 (reverse)

seq1  ACAATATGAGGAACTGCATTACAGCATTAGGAGGGCAAGCAATAATTAAG  50
      |||||||||| || | || |||||||||||||||||||||||||||||||
seq2  ACAATATGAGAAAATACA-TACAGCATTAGGAGGGCAAGCAATAATTAAG  49

seq1  T-CCCCATTCGCTGTTGCCAGTTCAGGA-GGCCAAATCTGTGTTGTGACG  98
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCCCCATTCGCTGTTGCCAGTTCAGGAGGGCCAAATCTGTGTTGTGACG  99

seq1  TGGAACAAGTCTGATAGTCTCCTGCAAAGATACCCTTGTTG-AAGGTATC  147
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGAACAAGTCTGATAGTCTCCTGCAAAGATACCCTTGTTGAAAGGTATC  149

seq1  CCTGAGATGACATCCAGTGGTCTTCTTCACTTCAGGTTGATTTGAGGCCG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGACATCCAGTGGTCTTCTTCACTTCAGGTTGATTTGAGGCCG  199

seq1  TCTCAAGATCTTATTCCTTTGGGAGCCTTTGGGCCCCATGCAGCTGTTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATCTTATTCCTTTGGGAGCCTTTGGGCCCCATGCAGCTGTTCA  249

seq1  CCTAAGGTCCAGTATTTATCCTTTCTCACTTTCAGGTCCGAACCCGACAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTCCAGTATTTATCCTTTCTCACTTTCAGGTCCGAACCCGACAT  299

seq1  AGCAATGGGACCTCCAGCTTGGAGAGGCAAAGAGCCTCCCCCAGAATCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGGACCTCCAGCTTGGAGAGGCAAAGAGCCTCCCCCAGAATCAC  349

seq1  CCGAGGTCGGCAGGGCCGCCACCATGTGCAGGAGTACCCTGTGGAGTTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGTCGGCAGGGCCGCCACCATGTGCAGGAGTACCCTGTGGAGTTTC  399

seq1  CGGCTACCAGGGTTGGTCCCATCTCTGATCTCAAGATCTGCTTCATTCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTACCAGGGTTGGTCCCATCTCTGATCTCAAGATCTGCTTCATTCAC  449

seq1  TCCCCACAACACAACATCGTTGTATGTAGCGTGTACTTTCTTCACACGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACAACACAACATCGTTGTATGTAGCGTGTACTTTCTTCACACGCT  499

seq1  CCTGCTTTCCAGGGTCTGGCTTCTTACTTTCTGTTCTGAGTCGTCCTACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTCCAGGGTCTGGCTTCTTACTTTCTGTTCTGAGTCGTCCTACT  549

seq1  TGGAGCTACTTTGAGGAGACAAGAATTC  575
      ||||||||||||||||||||||||||||
seq2  TGGAGCTACTTTGAGGAGACAAGAATTC  577