BAC Information

Click to search

BAC

Clone NameB6Ng01-027B24
Chromosome2 (Build37)
Map Location 5,166,603 - 5,333,362
singlet/doubletdoublet
Overlap geneLOC100040292, Camk1d
Upstream geneFrmd4a, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3
Downstream geneLOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027B24.bB6Ng01-027B24.g
ACCDH857958DH857959
length313192
definitionDH857958|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B24, 5' end.DH857959|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,333,052 - 5,333,362)(5,166,603 - 5,166,777)
sequence
tgttgctactgtgctcctagtaccttgacttagtgtgctccgagagagga
tgattgtagcctccctggaaatctacactgaactgggacctaaatcttgt
tcagaagctgtgacaggcagaaggaagagcagaggaccaaagcaggaggg
gttaaagagactgctgagcctgagtgctgtgctgccacttgctgacctga
gaactgccagtctggagaagtgtgaggaggaggtgggagcttttagcagc
ttctcagtgcagccaggagctcagctgtgccaggcttgaactgtggcagg
ggagggggagggt
atcggtttcctttcgatgagggaagaggtgacatagcagatttgaagata
acatccctaatttcaattcttcttcatgatgatttccctatcatatttgg
actttacattatacagagaaacccattattgaaggttggtatatggcagt
ctttttcttggaagccctctttggtcactggaatagtagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_5333052_5333362
seq2: B6Ng01-027B24.b_41_352 (reverse)

seq1  CCCTCCCCCTCCCCTGCCACAGTTCAAGCCTGGCACAGCTGAGCTCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCTCCCCTGCCACAGTTCAAGCCTGGCACAGCTGAGCTCCTGG  50

seq1  CTGCACTGAGAAGCTGCTAAAAGCTCCCACCTCCTCCTCACACTTCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGAGAAGCTGCTAAAAGCTCCCACCTCCTCCTCACACTTCTCCA  100

seq1  GACTGGCAGTTCTCAGGTCAGCAAGTGGCAGCACAGCACTCAGGCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCAGTTCTCAGGTCAGCAAGTGGCAGCACAGCACTCAGGCTCAGC  150

seq1  AGTCTCTTTAACCCCTCCTGCTTTGGTCCTCTGCTCTTCCTTCTGCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTTAACCCCTCCTGCTTTGGTCCTCTGCTCTTCCTTCTGCCTGT  200

seq1  CACAGCTTCTGAACAAGATTTAGGTCCCAGTTCAGTGTAGATTTCCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTCTGAACAAGATTTAGGTCCCAGTTCAGTGTAGATTTCCAGGG  250

seq1  AGGCTACAATCATCCTCTCTCGGAGCACACTAAGTC-AGGTACTAGGAGC  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGCTACAATCATCCTCTCTCGGAGCACACTAAGTCAAGGTACTAGGAGC  300

seq1  ACAGTAGCAACA  311
      ||||||||||||
seq2  ACAGTAGCAACA  312

seq1: chr2_5166603_5166777
seq2: B6Ng01-027B24.g_24_192

seq1  AGAGGTGACATAGCAGATTTGAAGAGAACAGCCCTAAAATCCAAGTTCTT  50
      ||||||||||||||||||||||||| |||| ||||||  ||  | |||||
seq2  AGAGGTGACATAGCAGATTTGAAGATAACATCCCTAATTTC--AATTCTT  48

seq1  CTCTCAGGAGGCATTACCCTCAGCAGAACTGGACTTTACATTATACAGAG  100
      || ||| || | ||| |||| | || |  |||||||||||||||||||||
seq2  CT-TCATGATG-ATTTCCCT-ATCATATTTGGACTTTACATTATACAGAG  95

seq1  AAACCCAGTAGTGAAGGGAAGGTATAGGGCAGTCTTTTTCTTGGAAGCCC  150
      ||||||| || |||| ||  |||||| |||||||||||||||||||||||
seq2  AAACCCATTATTGAA-GGTTGGTATATGGCAGTCTTTTTCTTGGAAGCCC  144

seq1  CCTTTGGTCACTGGAATAGAAGCTA  175
       |||||||||||||||||| |||||
seq2  TCTTTGGTCACTGGAATAGTAGCTA  169