BAC Information

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BAC

Clone NameB6Ng01-027C18
Chromosome2 (Build37)
Map Location 91,751,507 - 91,929,301
singlet/doubletdoublet
Overlap geneD030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Upstream genePtpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027C18.bB6Ng01-027C18.g
ACCDH857993DH857994
length971961
definitionDH857993|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C18, 5' end.DH857994|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,928,328 - 91,929,301)(91,751,507 - 91,752,474)
sequence
gaattctacatcttgatctgagggcagccaggagacagtctcttctgcag
gcagccaggaggagggtctcttgtccactgggcagagcttaagcataaga
cctcaaagcccacccccacagtgactcactcctccaacaaggccacaact
cctaatagtgtcacttcccatgggccaatcatattcaaaccaccatactg
cccctgcctgccacactcaagtgcgtgacaagtgatcaacttcctggagc
ctccatctcttcctcagaaaatgaaggcagaacagtatttacctcatagc
cctgtgatgagactcaatgacatgcggtgttgggcatccaaagagattct
gcctgaagctaaggaagttccaggaaccatttctctccccccactcttcc
ctagggagaggggagaacagagagatggagacaggcatgtaagcccttcc
caaggctctcccagggtctctgctcacatcttgcaaattagttaatcagt
taagcctactgccatttgcacaatgacttctcttcagtcatccatttcct
tataccaaatgtcactggaaaggacataggcctttgcttcatgattctgt
aatttcagtatgccttcccgaaccctgtaagcctcgggcctcataaaact
caagtttaccctctgtccgggtgcaaggctgccagccatggctctcgtgc
ctggaagatttgtctgtctttggggccggccggccggcagagagttggca
ctcagggattctgttatgaatgaaggaatgctgggttcactgtcttcaga
gtttaagagaccttgaaatgcccatcatcgctctcagattattggagaac
tgttaggaaattgaagacttttctgcatctaccctcacttaaaaaaagag
ggcagagtgagctgtcaggaagcccagattccaccctatggtcacggttc
tttatcgaagagcttttggtt
gaattcaagacttctggaaaggacccaccccaagctcttctgacttctta
tccttttcacctagaaccagcagagccacgtggcggacagacagagacat
gggtttgatgaatgcaattgggctgcagcctcggaacccaaccacctctg
tgacatctcagggcacccagactctggccctccagttgcagaacgctgaa
acacagactgagagggaggaagaggaaccaggggcagcatcttcaggtcc
tggtgaaggtaggagccagggacatctgactgaaaatcatctgtcctctc
ggggagaataagacctatgctcatggaggaccaaagagcatgcgtggaaa
gtgagattccatagggagtgctccttccagagccaaggcagggtccctag
cttatctcccctcagctagcatggcatattggtactgctcaagtgaaatt
cttggtgctcctctggtagcagtgttttgatgttgttgtagatacagctg
ggcataccagcagtccttcctctcacctacttcaggtatgacacagtcag
catcagccgcgctttctgctggcctcacacatttaagaaccaattagcac
ttcccagtggtagggctcaagccactttgtaacccatcagcagctgcgtt
cagcaggctgttctcactctcctttacctcctacctctagccccttgctg
ctcctagttctacacaaggtagcgtctaaacagactttctagttctcatc
aagctatttgcttgaaagacaatggaaggagaagccctgatgtgcatcag
ccaagagtaacaaagctgctgatattgcctccagggatagctttctacac
tgctgctctcatgggccctttcctctccctgccatgaactgaaatgttca
gagttaaatccctttttcatctgcagcctagtcatctctcactctgaagc
ccgggctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_91928328_91929301
seq2: B6Ng01-027C18.b_42_1012 (reverse)

seq1  AACCAAAAGCATCTTCAGATAGAGAACAGTGACCATAGGGTGGGATCTGG  50
      |||||||||| ||||| |||| ||||| ||||||||||||||| ||||||
seq2  AACCAAAAGC-TCTTC-GATAAAGAACCGTGACCATAGGGTGGAATCTGG  48

seq1  GCTTCCTGACAGCTCACTCTGCCCTCTTTTTCTTAGTGAGGGTAGACTGC  100
      ||||||||||||||||||||||||||||||| | |||||||||||| |||
seq2  GCTTCCTGACAGCTCACTCTGCCCTCTTTTTTTAAGTGAGGGTAGA-TGC  97

seq1  AGAAATGTCTCCATTTCCTTAACAGTTCTTCAATAATCTGAGAGCGATGA  150
      ||||| |||| || || | |||||||||| ||||||||||||||||||||
seq2  AGAAAAGTCTTCAATTTCCTAACAGTTCTCCAATAATCTGAGAGCGATGA  147

seq1  TGGGCATTTCAAGGTCTCTTAAACTCTGAAGACAGTGAACCCAGCATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTTCAAGGTCTCTTAAACTCTGAAGACAGTGAACCCAGCATTCC  197

seq1  TTCATTCATAACAGAATCCCTGAGTGCCAACTCTCTGCCGGCCGGCCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATAACAGAATCCCTGAGTGCCAACTCTCTGCCGGCCGGCCGGC  247

seq1  CCCAAAGACAGACAAATCTTCCAGGCACGAGAGCCATGGCTGGCAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGACAGACAAATCTTCCAGGCACGAGAGCCATGGCTGGCAGCCTT  297

seq1  GCACCCGGACAGAGGGTAAACTTGAGTTTTATGAGGCCCGAGGCTTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCGGACAGAGGGTAAACTTGAGTTTTATGAGGCCCGAGGCTTACAG  347

seq1  GGTTCGGGAAGGCATACTGAAATTACAGAATCATGAAGCAAAGGCCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGGGAAGGCATACTGAAATTACAGAATCATGAAGCAAAGGCCTATG  397

seq1  TCCTTTCCAGTGACATTTGGTATAAGGAAATGGATGACTGAAGAGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCAGTGACATTTGGTATAAGGAAATGGATGACTGAAGAGAAGTC  447

seq1  ATTGTGCAAATGGCAGTAGGCTTAACTGATTAACTAATTTGCAAGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCAAATGGCAGTAGGCTTAACTGATTAACTAATTTGCAAGATGTG  497

seq1  AGCAGAGACCCTGGGAGAGCCTTGGGAAGGGCTTACATGCCTGTCTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGACCCTGGGAGAGCCTTGGGAAGGGCTTACATGCCTGTCTCCAT  547

seq1  CTCTCTGTTCTCCCCTCTCCCTAGGGAAGAGTGGGGGGAGAGAAATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTCTCCCCTCTCCCTAGGGAAGAGTGGGGGGAGAGAAATGGTT  597

seq1  CCTGGAACTTCCTTAGCTTCAGGCAGAATCTCTTTGGATGCCCAACACCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTTCCTTAGCTTCAGGCAGAATCTCTTTGGATGCCCAACACCG  647

seq1  CATGTCATTGAGTCTCATCACAGGGCTATGAGGTAAATACTGTTCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATTGAGTCTCATCACAGGGCTATGAGGTAAATACTGTTCTGCCT  697

seq1  TCATTTTCTGAGGAAGAGATGGAGGCTCCAGGAAGTTGATCACTTGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTGAGGAAGAGATGGAGGCTCCAGGAAGTTGATCACTTGTCAC  747

seq1  GCACTTGAGTGTGGCAGGCAGGGGCAGTATGGTGGTTTGAATATGATTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGAGTGTGGCAGGCAGGGGCAGTATGGTGGTTTGAATATGATTGG  797

seq1  CCCATGGGAAGTGACACTATTAGGAGTTGTGGCCTTGTTGGAGGAGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGAAGTGACACTATTAGGAGTTGTGGCCTTGTTGGAGGAGTGAG  847

seq1  TCACTGTGGGGGTGGGCTTTGAGGTCTTATGCTTAAGCTCTGCCCAGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGGGGGTGGGCTTTGAGGTCTTATGCTTAAGCTCTGCCCAGTGG  897

seq1  ACAAGAGACCCTCCTCCTGGCTGCCTGCAGAAGAGACTGTCTCCTGGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGACCCTCCTCCTGGCTGCCTGCAGAAGAGACTGTCTCCTGGCTG  947

seq1  CCCTCAGATCAAGATGTAGAATTC  974
      ||||||||||||||||||||||||
seq2  CCCTCAGATCAAGATGTAGAATTC  971

seq1: chr2_91751507_91752474
seq2: B6Ng01-027C18.g_67_1027

seq1  GAATTCAAGACTTCTGGAAAGGACCCACCCCAAGCTCTTCTGACTTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTTCTGGAAAGGACCCACCCCAAGCTCTTCTGACTTCTTA  50

seq1  TCCTTTTCACCTAGAACCAGCAGAGCCACGTGGCGGACAGACAGAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCACCTAGAACCAGCAGAGCCACGTGGCGGACAGACAGAGACAT  100

seq1  GGGTTTGATGAATGCAATTGGGCTGCAGCCTCGGAACCCAACCACCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGATGAATGCAATTGGGCTGCAGCCTCGGAACCCAACCACCTCTG  150

seq1  TGACATCTCAGGGCACCCAGACTCTGGCCCTCCAGTTGCAGAACGCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTCAGGGCACCCAGACTCTGGCCCTCCAGTTGCAGAACGCTGAA  200

seq1  ACACAGACTGAGAGGGAGGAAGAGGAACCAGGGGCAGCATCTTCAGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACTGAGAGGGAGGAAGAGGAACCAGGGGCAGCATCTTCAGGTCC  250

seq1  TGGTGAAGGTAGGAGCCAGGGACATCTGACTGAAAATCATCTGTCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGGTAGGAGCCAGGGACATCTGACTGAAAATCATCTGTCCTCTC  300

seq1  GGGGAGAATAAGACCTATGCTCATGGAGGACCAAAGAGCATGCGTGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAATAAGACCTATGCTCATGGAGGACCAAAGAGCATGCGTGGAAA  350

seq1  GTGAGATTCCATAGGGAGTGCTCCTTCCAGAGCCAAGGCAGGGTCCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATTCCATAGGGAGTGCTCCTTCCAGAGCCAAGGCAGGGTCCCTAG  400

seq1  CTTATCTCCCCTCAGCTAGCATGGCATATTGGTACTGCTCAAGTGAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCCCCTCAGCTAGCATGGCATATTGGTACTGCTCAAGTGAAATT  450

seq1  CTTGGTGCTCCTCTGGTAGCAGTGTTTTGATGTTGTTGTAGATACAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGCTCCTCTGGTAGCAGTGTTTTGATGTTGTTGTAGATACAGCTG  500

seq1  GGCATACCAGCAGTCCTTCCTCTCACCTACTTCAGGTATGACACAGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACCAGCAGTCCTTCCTCTCACCTACTTCAGGTATGACACAGTCAG  550

seq1  CATCAGCCGCGCTTTCTGCTGGCCTCACACATTTAAGAACCAATTAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCGCGCTTTCTGCTGGCCTCACACATTTAAGAACCAATTAGCAC  600

seq1  TTCCCAGTGGTAGGGCTCAAGCCACTTTGTAACCCATCAGCAGCTGCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTGGTAGGGCTCAAGCCACTTTGTAACCCATCAGCAGCTGCGTT  650

seq1  CAGCAGGCTGTTCTCACTCTCC-TTACCTCCTACCTCTAGCCCCTTGCTG  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGCAGGCTGTTCTCACTCTCCTTTACCTCCTACCTCTAGCCCCTTGCTG  700

seq1  CTCCTAGTTCTACACAAGGTAGCGTCTAAACAGACTTTCTAGTTCTCATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGTTCTACACAAGGTAGCGTCTAAACAGACTTTCTAGTTCTCATC  750

seq1  AAGCTATTTGCTTGAAAGACAATGGAAGGAGAAGCCCTGATGTGCATCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGCTATTTGCTTGAAAGACAATGGAAGGAGAAGCCCTGATGTGCATCA-  799

seq1  GCCAAGAGTAACAAAGCTGCTGATATTGCCTCCAGGGAATAGCTTTCTAC  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCAAGAGTAACAAAGCTGCTGATATTGCCTCCAGGG-ATAGCTTTCTAC  848

seq1  ACTGCTGCTCTCCATGGGCCCTTTCCTTCTCCCTGCCATGAACTGAAATG  899
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  ACTGCTGCTCT-CATGGGCCCTTTCC-TCTCCCTGCCATGAACTGAAATG  896

seq1  TTCAGAGTTAAATCCCTTTTCTCATCTGCAGCCTAGTCCATCTCTCACAT  949
      |||||||||||||||||||| |||||||||||||||| |||||||||| |
seq2  TTCAGAGTTAAATCCCTTTT-TCATCTGCAGCCTAGT-CATCTCTCAC-T  943

seq1  CTGAAGCCCAGGGCTCTTT  968
      ||||||||| |||||||||
seq2  CTGAAGCCC-GGGCTCTTT  961