BAC Information

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BAC

Clone NameB6Ng01-027D04
Chromosome2 (Build37)14 (Build37)
Map Location 142,776,262 - 142,776,79640,624,727 - 40,625,706
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027D04.bB6Ng01-027D04.g
ACCDH858012DH858013
length959975
definitionDH858012|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D04, 5' end.DH858013|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,262 - 142,776,796)(40,624,727 - 40,625,706)
sequence
gaattctttgttcaactctgagccccattttttaatggggttattcgatt
ttctggagtccacctttttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcctttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtacccatatcttagaggcttttccctac
tttctcctgtataagtttcagtgtctctggttttatgtggagttccttaa
tccgcttagatttgaccttagtacaaggagatagaaatgaatcaattcgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtctttaattctgttccatttg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatctttgagaagagtttttcctatcctcggttttttgttattccagatg
aatctgccgatttctaattccttgaagaattgagttggagttttgatggg
gattgcattgaatctgtagattgcttttggcaagatagccatttttacat
gttgatcctgccaatccatgagcatgggagatctttccatcttctgagaa
cttctttaattcctttctttgagacttgaagtctatcatacagatcttca
cttcctagttgagtcacgccaggatttatattatttgtgactatgagaag
gtgttgttt
gaattcaaaacccaaacctgtgggagattcttcagatatgaaccagagca
gatatggaagctctgtctgtaggtaatatagtgaagtttggagtgttgag
gccagctggcattgatctttattaaggaaagctagggttattgattttaa
accaagtctgaattctgttacatttcttttccctatattcagggcacttc
tgtctacactattgtatctaaagataaacaaaaggtgtctcaggtaatat
aatctctcttccctacccttttcaatgtgccttttcttatttctgcacta
catctagatggtgtaacctctcacctgttttgcttagttcttatgaaggt
atttcatgcctggatagttgtttcaattgatatttctgcagaaggacaca
ctggacagttctattctgttatcttggtgacatgcttcttggtattagca
cattttctgatgcaagttgacttctggtccatatagaaaaaaatagtcca
gattgtaaggctgatatttaatggtggaagaactgcctctacattttatc
ttgatacacagagttatagtttattaatgatatctaacaaagtataaaag
agtatctgacagctgagaagggctgtaaatggcttctcagtacagatatt
gttgtcataaataaatgtggaattataggggcttattgctagtttcttca
accatcttattcaataaccttaattacagactacacaaggacaaaaaaga
taatgggagtgatggtaacgggggttgtagaccctatgatatatcaaatg
gcctctaaaaagaatgtcacttttaagttatggtgagacaacctgtagtt
ataagtttatacagattattgtaatccttagattcctgttcagaaaaatt
ataattgaacatgtctgagagaaaaaaattcccacatgtagcatttggaa
ttggggaagagaaaagaggaggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776262_142776796
seq2: B6Ng01-027D04.b_486_1002 (reverse)

seq1  AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTG  50
      |||||||| ||||||| |||||||||||||||||||   |||  ||||||
seq2  AAACAACA-CCTTCTC-ATAGTCACAAATAATATAA---ATCCTGGCGTG  45

seq1  ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCT  100
      |||| |||| |||||||| ||||||||||||||  | |||||||||||| 
seq2  ACTC-AACT-AGGAAGTG-AAGATCTGTATGAT--AGACTTCAAGTCTC-  89

seq1  GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAGGATCTCCCATGCT  150
       ||||||| ||||||||||| ||||||||||||||| |||||||||||||
seq2  AAAGAAAGGAATTAAAGAAGTTCTCAGAAGATGGAAAGATCTCCCATGCT  139

seq1  CATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCA  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATGGATTGGCAGGATCAACA-TGTAAAAATGGCTATCTTGCCAAAAGCA  188

seq1  ATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAA  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTACAGATTCAATGCAATCCCCATCAAAACTCCAACTCAATTCTTCAA  238

seq1  CGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTA  300
       ||||||||      |||  ||| |||||||||||||||||||||||| |
seq2  GGAATTAGA------AATCGGCAGATTCATCTGGAATAACAAAAAACCGA  282

seq1  GGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACC  350
      |||||| ||||| ||||||||| |||||||||||||||||||||||||||
seq2  GGATAGGAAAAACTCTTCTCAAAGATAAAAGAACCTCTGGTGGAATCACC  332

seq1  ATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATG  400
      ||||| |||||||| || |||||||||||||||||||| |||||||||||
seq2  ATGCCGGACCTAAAACTGTACTACAGAGCAATTGTGATCAAAACTGCATG  382

seq1  GTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACC  450
      |||||||||||| ||||||||||||||| ||||||| |||||| ||||||
seq2  GTACTGGTATAGTGACAGACAAGTAGACAAATGGAACAGAATTAAAGACC  432

seq1  CAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCT  500
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCT  482

seq1  AAAACCATCCAGAGGAAGAAAGACAGCATTTTCAA  535
      |||||||||||| |||| |||||||||||||||||
seq2  AAAACCATCCAGTGGAAAAAAGACAGCATTTTCAA  517

seq1: chr14_40624727_40625706
seq2: B6Ng01-027D04.g_65_1039 (reverse)

seq1  GTTCCTCCTCTTCTCTCTATCCTCAATTCCAAATGCTACATGTGGGAATT  50
      |||||||||||| ||||| ||| |||||||||||||||||||||||||||
seq2  GTTCCTCCTCTTTTCTCT-TCCCCAATTCCAAATGCTACATGTGGGAATT  49

seq1  ATTTTTCTCTCAGACATGTTCAATTATAATTCTTTCTGAACAGGAATTCT  100
       |||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  -TTTTTCTCTCAGACATGTTCAATTATAATT-TTTCTGAACAGGAA-TCT  96

seq1  AAGGATTACAATAATCTGTATATACTTATAACTACAGGTTGTCTCACCAT  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGGATTACAATAATCTGTATAAACTTATAACTACAGGTTGTCTCACCAT  146

seq1  AACTTTAAAAGTGACATTCTTTTTAGAGGCCATTTGATATATCATAGGGT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAC-TTAAAAGTGACATTCTTTTTAGAGGCCATTTGATATATCATAGGGT  195

seq1  CTACAACCCCCGTTACCATCACTCCCATTATCTTTTTTGTCCTTGTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACCCCCGTTACCATCACTCCCATTATCTTTTTTGTCCTTGTGTAG  245

seq1  TCTGTAATTAAGGTTATTGAATAAGATGGTTGAAGAAACTAGCAATAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTAAGGTTATTGAATAAGATGGTTGAAGAAACTAGCAATAAGC  295

seq1  CCCTATAATTCCACATTTATTTATGACAACAATATCTGTACTGAGAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAATTCCACATTTATTTATGACAACAATATCTGTACTGAGAAGCC  345

seq1  ATTTACAGCCCTTCTCAGCTGTCAGATACTCTTTTATACTTTGTTAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGCCCTTCTCAGCTGTCAGATACTCTTTTATACTTTGTTAGATA  395

seq1  TCATTAATAAACTATAACTCTGTGTATCAAGATAAAATGTAGAGGCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATAAACTATAACTCTGTGTATCAAGATAAAATGTAGAGGCAGTT  445

seq1  CTTCCACCATTAAATATCAGCCTTACAATCTGGACTATTTTTTTCTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCATTAAATATCAGCCTTACAATCTGGACTATTTTTTTCTATAT  495

seq1  GGACCAGAAGTCAACTTGCATCAGAAAATGTGCTAATACCAAGAAGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGAAGTCAACTTGCATCAGAAAATGTGCTAATACCAAGAAGCATG  545

seq1  TCACCAAGATAACAGAATAGAACTGTCCAGTGTGTCCTTCTGCAGAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGATAACAGAATAGAACTGTCCAGTGTGTCCTTCTGCAGAAATA  595

seq1  TCAATTGAAACAACTATCCAGGCATGAAATACCTTCATAAGAACTAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGAAACAACTATCCAGGCATGAAATACCTTCATAAGAACTAAGCA  645

seq1  AAACAGGTGAGAGGTTACACCATCTAGATGTAGTGCAGAAATAAGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTGAGAGGTTACACCATCTAGATGTAGTGCAGAAATAAGAAAAG  695

seq1  GCACATTGAAAAGGGTAGGGAAGAGAGATTATATTACCTGAGACACCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTGAAAAGGGTAGGGAAGAGAGATTATATTACCTGAGACACCTTT  745

seq1  TGTTTATCTTTAGATACAATAGTGTAGACAGAAGTGCCCTGAATATAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCTTTAGATACAATAGTGTAGACAGAAGTGCCCTGAATATAGGG  795

seq1  AAAAGAAATGTAACAGAATTCAGACTTGGTTTAAAATCAATAACCCTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATGTAACAGAATTCAGACTTGGTTTAAAATCAATAACCCTAGC  845

seq1  TTTCCTTAATAAAGATCAATGCCAGCTGGCCTCAACACTCCAAACTTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAATAAAGATCAATGCCAGCTGGCCTCAACACTCCAAACTTCAC  895

seq1  TATATTACCTACAGACAGAGCTTCCATATCTGCTCTGGTTCATATCTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACCTACAGACAGAGCTTCCATATCTGCTCTGGTTCATATCTGAA  945

seq1  GAATCTCCCACAGGTTTGGGTTTTGAATTC  980
      ||||||||||||||||||||||||||||||
seq2  GAATCTCCCACAGGTTTGGGTTTTGAATTC  975