BAC Information

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BAC

Clone NameB6Ng01-027D10
Chromosome2 (Build37)
Map Location 52,200,647 - 52,348,335
singlet/doubletdoublet
Overlap geneLOC100041670, Arl5a, Cacnb4
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027D10.bB6Ng01-027D10.g
ACCDH858022DH858023
length1,0101,045
definitionDH858022|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D10, 5' end.DH858023|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,347,319 - 52,348,335)(52,200,647 - 52,201,540)
sequence
gaattcacatggcataaactgaaaaaaacttttcacagaatacccaagtt
gaataagtgatgattgggcaaacttgtcagataaaaaattcaacatttta
taaccttcccacctctccatttcttgagttagctctgacatgtttctctg
tgtcttagctggacagtgtaagataggtcaaacactaagaacagtttatc
catggacttaagatagtcttaaaaactgtacaacagagatggtggctcac
agctgtaatcccagcctttgggaggctatcacaggctgacttcaattcag
gctaacctggactgtgtaggaagaccctcactcagaaagaaagaattaag
acagagcaccaaaatatcttcacgtgaaaaacgacccaatttagaaatgt
ggattttttgtattttgtcatatgaggtcaactaattcagaactttacat
acactgggcagtgggtagattgcacaatgcccaacatggtatcaaacacg
ttcatatgtcctttagctaaagtttctgtcttccttcttctctttttaca
ctgccagcatcccattagtctcccagacacagtctactgaagtcttcccc
tccgagtagcactctctcgtgcctgctctgtgaccttagattctccttct
ttaactcaggtgcagtaacaccgtctactccctactttctgccttcacat
gccttctcctggcttgcaacaattctttcctttctttctttcttccttct
ttcctttctttctttctttctttctttctttctttctttctttctttctc
tctctctttctttctctctttctctcgtctctctctctttctttctctct
ttctctctttttctttctctctctttctctctcgctttctttctctcttt
ctttctttctttctttctttctttctttcttctttcttcagatacatatt
cagcactgaattgctttgttttgtgagcacatctagactttcaacttgac
tgtcactgtt
gaattccctcctagcctctgcctcttacactgttccacttcctcttctgt
gacgatccctgagccttgaacaggtgatatttgtatcttattcaggatgg
catatttggtggtcactttgactagttaccagctctgcattaaccattgc
tcatttcaaaatgaagcttctctgaacaaggctgagagccgttctagtct
aagagtataaacataactatttgaatggtagtttgactacacattcattt
agcaaaacatcagtattaagttaccctctaagacctatgacttcctcaac
cctaggcgtttgatgagatatacagtaccaagcatatactgcttcctgtg
gagtgaacctcaaatccaatcagaaagcagttgcttaccacctgcaccca
ctgttaccactatcatgacacttttgttccaatgggcacatctgacctgg
aaggtcagagttatagcccacaatctatagctaggtaagagtacttgttc
atgacttctctcccctaacagcctgcatcacaccctccagaaccatggat
gctactcagtggggaggaagcttctgtctctgtcccagcagtgtggtctt
accatctggttgtaagtgagcaagagcagtagaaaaagcctctgttgttt
tggggagttcccacaggcttcctctctctgcttttgttgttgtttgtttt
tttcattttgtttgcttgttttaatgtagacacgtatagctatgaacttc
ctcttaggactgttttcattttgttccacaggttttgctacatcacattt
aacttttaattctcttccaggactttttattttcttcttaatttttgatc
actcattcattattcaatagtgagtccaatctctacaattctgtacattt
tctggagtactttgctattgatttttagttttgttcactgcagtcagaca
tatggaagtatggcaattgtattggtagactgtctctgtatcgattatac
atatttatattaggcaaagtcttatattgaagaaaattgtattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52347319_52348335
seq2: B6Ng01-027D10.b_45_1054 (reverse)

seq1  AACAGTGTACAGTCAAGTGGAAAGTCTGAGATGTGCTCACAAAACAAAGC  50
      ||||||| |||||||||| |||||||| ||||||||||||||||||||||
seq2  AACAGTG-ACAGTCAAGTTGAAAGTCT-AGATGTGCTCACAAAACAAAGC  48

seq1  AATTCAGTGCTGAAATATGGTATCAGAAAGAAAGAAAGAAAGAAAGAAAG  100
      |||||||||||| ||||| ||||| | ||||||| |||||||||||||||
seq2  AATTCAGTGCTG-AATAT-GTATCTG-AAGAAAG-AAGAAAGAAAGAAAG  94

seq1  AAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAGAGAGAGAAAGAGAGAG  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGCGAGAGAGAAAGAGAGAG  144

seq1  AAAGAAAAAGAGAGAAAGAGAGAAAGAAAGAGAGAGAGAACGAGAGAAAG  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGAAAAAGAGAGAAAGAGAGAAAGAAAGAGAGAGAG-ACGAGAGAAAG  193

seq1  AGAGAAAGAAAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  243

seq1  AGAAAGAAAGAAAGGAAAGAAGGAAGAAAGAAAGAAAGGAAAGAATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGGAAAGAAGGAAGAAAGAAAGAAAGGAAAGAATTGTT  293

seq1  GCAAGCCAGGAGAAGGCATGTGAAGGCAGAAAGTAGGGAGTAGACGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGGAGAAGGCATGTGAAGGCAGAAAGTAGGGAGTAGACGGTGT  343

seq1  TACTGCACCTGAGTTAAAGAAGGAGAATCTAAGGTCACAGAGCAGGCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCACCTGAGTTAAAGAAGGAGAATCTAAGGTCACAGAGCAGGCACG  393

seq1  AGAGAGTGCTACTCGGAGGGGAAGACTTCAGTAGACTGTGTCTGGGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGCTACTCGGAGGGGAAGACTTCAGTAGACTGTGTCTGGGAGAC  443

seq1  TAATGGGATGCTGGCAGTGTAAAAAGAGAAGAAGGAAGACAGAAACTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGATGCTGGCAGTGTAAAAAGAGAAGAAGGAAGACAGAAACTTTA  493

seq1  GCTAAAGGACATATGAACGTGTTTGATACCATGTTGGGCATTGTGCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGGACATATGAACGTGTTTGATACCATGTTGGGCATTGTGCAATC  543

seq1  TACCCACTGCCCAGTGTATGTAAAGTTCTGAATTAGTTGACCTCATATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACTGCCCAGTGTATGTAAAGTTCTGAATTAGTTGACCTCATATGA  593

seq1  CAAAATACAAAAAATCCACATTTCTAAATTGGGTCGTTTTTCACGTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACAAAAAATCCACATTTCTAAATTGGGTCGTTTTTCACGTGAAG  643

seq1  ATATTTTGGTGCTCTGTCTTAATTCTTTCTTTCTGAGTGAGGGTCTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGTGCTCTGTCTTAATTCTTTCTTTCTGAGTGAGGGTCTTCCT  693

seq1  ACACAGTCCAGGTTAGCCTGAATTGAAGTCAGCCTGTGATAGCCTCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCCAGGTTAGCCTGAATTGAAGTCAGCCTGTGATAGCCTCCCAA  743

seq1  AGGCTGGGATTACAGCTGTGAGCCACCATCTCTGTTGTACAGTTTTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGATTACAGCTGTGAGCCACCATCTCTGTTGTACAGTTTTTAAG  793

seq1  ACTATCTTAAGTCCATGGATAAACTGTTCTTAGTGTTTGACCTATCTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTAAGTCCATGGATAAACTGTTCTTAGTGTTTGACCTATCTTAC  843

seq1  ACTGTCCAGCTAAGACACAGAGAAACATGTCAGAGCTAACTCAAGAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAGCTAAGACACAGAGAAACATGTCAGAGCTAACTCAAGAAATG  893

seq1  GAGAGGTGGGAAGGTTATAAAATGTTGAATTTTTTATCTGACAAGTTTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGGAAGGTTATAAAATGTTGAATTTTTTATCTGACAAGTTTGC  943

seq1  CCAATCATCACTTATTCAACTTGGGTATTCTGTGAAAAGTTTTTTTCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATCACTTATTCAACTTGGGTATTCTGTGAAAAGTTTTTTTCAGT  993

seq1  TTATGCCATGTGAATTC  1017
      |||||||||||||||||
seq2  TTATGCCATGTGAATTC  1010

seq1: chr2_52200647_52201540
seq2: B6Ng01-027D10.g_223_1110

seq1  AAAATGAAGCTTCTCTGAACAAGGCTGAGAGCCGTTCTAGTCTAAGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGCTTCTCTGAACAAGGCTGAGAGCCGTTCTAGTCTAAGAGTA  50

seq1  TAAACATAACTATTTGAATGGTAGTTTGACTACACATTCATTTAGCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAACTATTTGAATGGTAGTTTGACTACACATTCATTTAGCAAAA  100

seq1  CATCAGTATTAAGTTACCCTCTAAGACCTATGACTTCCTCAACCCTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTATTAAGTTACCCTCTAAGACCTATGACTTCCTCAACCCTAGGC  150

seq1  GTTTGATGAGATATACAGTACCAAGCATATACTGCTTCCTGTGGAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATGAGATATACAGTACCAAGCATATACTGCTTCCTGTGGAGTGAA  200

seq1  CCTCAAATCCAATCAGAAAGCAGTTGCTTACCACCTGCACCCACTGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATCCAATCAGAAAGCAGTTGCTTACCACCTGCACCCACTGTTAC  250

seq1  CACTATCATGACACTTTTGTTCCAATGGGCACATCTGACCTGGAAGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCATGACACTTTTGTTCCAATGGGCACATCTGACCTGGAAGGTCA  300

seq1  GAGTTATAGCCCACAATCTATAGCTAGGTAAGAGTACTTGTTCATGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATAGCCCACAATCTATAGCTAGGTAAGAGTACTTGTTCATGACTT  350

seq1  CTCTCCCCTAACAGCCTGCATCACACCCTCCAGAACCATGGATGCTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCTAACAGCCTGCATCACACCCTCCAGAACCATGGATGCTACTC  400

seq1  AGTGGGGAGGAAGCTTCTGTCTCTGTCCCAGCAGTGTGGTCTTACCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGAGGAAGCTTCTGTCTCTGTCCCAGCAGTGTGGTCTTACCATCT  450

seq1  GGTTGTAAGTGAGCAAGAGCAGTAGAAAAAGCCTCTGTTGTTTT-GGGAG  499
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTTGTAAGTGAGCAAGAGCAGTAGAAAAAGCCTCTGTTGTTTTGGGGAG  500

seq1  TTCCCACAGGCTTCCTCTCTCTGCTTTTGTTGTTGTTTGTTTTTTTCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAGGCTTCCTCTCTCTGCTTTTGTTGTTGTTTGTTTTTTTCATT  550

seq1  TTGTTTGCTTGTTTTAATGTAGACACGTATAGCTATGAACTTCCTCTTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTTGTTTTAATGTAGACACGTATAGCTATGAACTTCCTCTTAG  600

seq1  GACTGTTTTCATTTTGTTCCACAGGTTTTGCTACATCACATTTAACTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTCATTTTGTTCCACAGGTTTTGCTACATCACATTTAACTTTT  650

seq1  AATTCTCTTCCAGGACTTTTTATTTTCTTCTTAATTTTTGATCACTCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTTCCAGGACTTTTTATTTTCTTCTTAATTTTTGATCACTCATT  700

seq1  CATTATTCAATAGTGAGTCCAATCTCTACAATTCTGTACATTTTCTGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCAATAGTGAGTCCAATCTCTACAATTCTGTACATTTTCTGGAG  750

seq1  TTACCTTTGCTATTGATTTTTAGTTTTGTTTCACTGCAGTCAGACAATAT  799
      |   |||||||||||||||||||||||| |||||||||||||||| ||||
seq2  T--ACTTTGCTATTGATTTTTAGTTTTG-TTCACTGCAGTCAGAC-ATAT  796

seq1  GGAAGTATGTCAATTTGTATTTGTTAAGACTGTCTCTGTATCGTATTAT-  848
      ||||||||| ||| ||||||| ||  ||||||||||||||||| ||||| 
seq2  GGAAGTATGGCAA-TTGTATTGGT--AGACTGTCTCTGTATCG-ATTATA  842

seq1  CATATTTATATTAGGGAAAGTTCTATACTGAGAAAATTTGTATTCT  894
      ||||||||||||||| |||||  |||| |||  ||| |||||||||
seq2  CATATTTATATTAGGCAAAGTCTTATATTGAAGAAAATTGTATTCT  888