BAC Information

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BAC

Clone NameB6Ng01-027N11
Chromosome2 (Build37)
Map Location 76,401,234 - 76,530,364
singlet/doubletdoublet
Overlap geneOsbpl6, Prkra, Dfnb59, Fkbp7, Plekha3
Upstream geneLOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1
Downstream geneTtn, 2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027N11.bB6Ng01-027N11.g
ACCDH858479DH858480
length1,0891,045
definitionDH858479|Mus musculus domesticus DNA, BAC clone: B6Ng01-027N11, 5' end.DH858480|Mus musculus domesticus DNA, BAC clone: B6Ng01-027N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,401,234 - 76,402,337)(76,529,305 - 76,530,364)
sequence
gaattcttgaggacttttgagtgacatgaaactttcccatgatcctcagt
atactatgtctcccaacaccaaacacccgagtttgcttttctttaatgtc
ccttgatctacctttaatcactttctacacaggtcccatttttctcttcg
tgcccccaaagcttctctgtcattgctctaaagataaagtccccaacata
agggagccccagcactccattctctcaaaggactcattcgctacttctct
gcctcagatctgggacaggaggaaggtttgagactaataaggtagacaga
cattgacacctcccagcatggagtcactgcagctcctactgagggtcaag
gatgatgaccctgacatctctgaaggcctcagagaatgtgtggtagcatg
ctcagtggaggcgctgtcagtgcgggaagttgcccattctcttccttcct
cagcaatagcttctttcccagataaagtactcactgtcagagctgaactg
catcagtggggccatcagtcaagtcattgcccatgggccaacagacagac
agacagacagacagacagagaacccttttatcctatcctttctcatttat
tgaattcataaaatttaaaataaaagcctattaaggaaattaagtgtttt
acacacacacacctctcccacacaccaaagtattgcaagttagtcaggga
gaacgagttagcacttcaactgcagaaagttcagtttttgtggagtctgt
gttatagctcctcaggcagctgagagaagatctatgtagtaagattagga
aagctagctggtggactagctagaagaatagcatttccatttcccaacaa
tgattaaccagtagctcttgtcaccctcaggtgaccccccctaaaagaac
aagaaagtgcttggctcccatccacacagcctagtctgatccggtctgga
cagaaagttctgctgccatggtctacaatatgtgaccttttctactaatg
ctttcactggtgactggttcatcagccacagtcatctatatatcagaggc
gtgtgtatcacaagaacaacggcaatgactccataagtt
gaattcaggcagaaactctcaggtcatgttctaaatgggaaaggaggaca
aagacgtgcttctaggaagagtgtccactgaagcagcagacagaggtggt
ttgcaaatatctgagctttaagttagagatttcacaagtgcatatatcta
acgccaacctttaactgacaaaaaaaggcaggctgaaggggatgccaaca
agatgagagatgttcagatgtaaattcactgacagcagaaacagaacata
aagatggtgacatggaagctaggaaaaacatttttcagggctaagtgtgc
agcttagttggtagggtatttaactaggatgcaggaagccctgagattga
acccagccctgcataaaccaggtatggaggcttgtaccttggtcccagca
ctgagtggggaagagcagaattaggatcaggcatgctggactgtgtagac
agtttgaggccagcctgtgctacataaggccctgccatcaaaacaaaaca
aacctgttttttaaaatcagtcttggagctagagagatggttcagtggtt
atgcagtggctcaaaaaaaattttttttcttccagtgtaaacatgcaaac
acagaaagcaaaatcacctaatgggcttgagagatggctcagcagttaaa
agcactgactgatcttccagaagtcctgagttcaattcccagcatggtgg
ctcacaaccatctgtaatggaatctgtgtctgaagacagctatggtgtac
tcatataaataaacaaaaacaacaaaaaacccacctagctgcctaactgc
atctcagcttctgttttcagatggctcatattactgtacaaccttgccag
atccaagaaaaacagtatctttgtagtctttttacaactaactttctaag
gaaaaaagatgaaatacagctagaaacattatacagcttagaacgtctat
caccaaacaatgttgccaccaaatcacttagtttccactgtttgtaaggt
cagctgtaaacgcttattcatgacaaagctggaacatggaaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76401234_76402337
seq2: B6Ng01-027N11.b_47_1135

seq1  GAATTCTTGAGGACTTTTGAGTGACATGAAACTTTCCCATGATCCTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGACTTTTGAGTGACATGAAACTTTCCCATGATCCTCAGT  50

seq1  ATACTATGTCTCCCAACACCAAACACCCGAGTTTGCTTTTCTTTAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATGTCTCCCAACACCAAACACCCGAGTTTGCTTTTCTTTAATGTC  100

seq1  CCTTGATCTACCTTTAATCACTTTCTACACAGGTCCCATTTTTCTCTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATCTACCTTTAATCACTTTCTACACAGGTCCCATTTTTCTCTTCG  150

seq1  TGCCCCCAAAGCTTCTCTGTCATTGCTCTAAAGATAAAGTCCCCAACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCAAAGCTTCTCTGTCATTGCTCTAAAGATAAAGTCCCCAACATA  200

seq1  AGGGAGCCCCAGCACTCCATTCTCTCAAAGGACTCATTCGCTACTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCCCAGCACTCCATTCTCTCAAAGGACTCATTCGCTACTTCTCT  250

seq1  GCCTCAGATCTGGGACAGGAGGAAGGTTTGAGACTAATAAGGTAGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGATCTGGGACAGGAGGAAGGTTTGAGACTAATAAGGTAGACAGA  300

seq1  CATTGACACCTCCCAGCATGGAGTCACTGCAGCTCCTACTGAGGGTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACACCTCCCAGCATGGAGTCACTGCAGCTCCTACTGAGGGTCAAG  350

seq1  GATGATGACCCTGACATCTCTGAAGGCCTCAGAGAATGTGTGGTAGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGACCCTGACATCTCTGAAGGCCTCAGAGAATGTGTGGTAGCATG  400

seq1  CTCAGTGGAGGCGCTGTCAGTGCGGGAAGTTGCCCATTCTCTTCCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGAGGCGCTGTCAGTGCGGGAAGTTGCCCATTCTCTTCCTTCCT  450

seq1  CAGCAATAGCTTCTTTCCCAGATAAAGTACTCACTGTCAGAGCTGAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAGCTTCTTTCCCAGATAAAGTACTCACTGTCAGAGCTGAACTG  500

seq1  CATCAGTGGGGCCATCAGTCAAGTCATTGCCCATGGGCCAACAGACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGGGGCCATCAGTCAAGTCATTGCCCATGGGCCAACAGACAGAC  550

seq1  AGACAGACAGACAGACAGAGAACCCTTTTATCCTATCCTTTCTCATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACAGACAGAGAACCCTTTTATCCTATCCTTTCTCATTTAT  600

seq1  TGAATTCATAAAATTTAAAATAAAAGCCTATTAAGGAAATTAAGTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCATAAAATTTAAAATAAAAGCCTATTAAGGAAATTAAGTGTTTT  650

seq1  ACACACACACACCTCTCCCACACACCAAAGTATTGCAAGTTAGTCAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACCTCTCCCACACACCAAAGTATTGCAAGTTAGTCAGGGA  700

seq1  GAACGAGTTAGCACTTCAACTGCAGAAAGTTCAGTTTTTGTGGAGTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAGTTAGCACTTCAACTGCAGAAAGTTCAGTTTTTGTGGAGTCTGT  750

seq1  GTTATAGCTCCTCAGGGCAGCTGAGAGAAGATCTATGTAGTAAGATTAGG  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTATAGCTCCTCA-GGCAGCTGAGAGAAGATCTATGTAGTAAGATTAGG  799

seq1  AAAGCTAGCTGGTGGACTAGCTAGAAGAATAGCATTTCCATTTCCCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGCTGGTGGACTAGCTAGAAGAATAGCATTTCCATTTCCCAACA  849

seq1  ATGATTAACCAGTAGCTCTTGTCACCCTCAGGTTGACCCCCCCCTAAAAA  900
      |||||||||||||||||||||||||||||||| ||||||||||   ||||
seq2  ATGATTAACCAGTAGCTCTTGTCACCCTCAGG-TGACCCCCCC--TAAAA  896

seq1  GAACAAGAAAGTGCTTGGCTCCCATCCAACACAAGCCTAGTCCTGATCCG  950
      ||||||||||||||||||||||||||| |||| |||||||| ||||||||
seq2  GAACAAGAAAGTGCTTGGCTCCCATCC-ACAC-AGCCTAGT-CTGATCCG  943

seq1  GTCTGGACAGGAAAGTTCCTGCTGCCATTGGTCTACAATAATGTGACCTT  1000
      ||||||||| ||||||| ||||||||| ||||||||||| ||||||||||
seq2  GTCTGGACA-GAAAGTT-CTGCTGCCA-TGGTCTACAAT-ATGTGACCTT  989

seq1  TTCTACTAATGCTTTTCACTGGTGACTGGTTCATCAGCCACAGTCATCTA  1050
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCTACTAATGC-TTTCACTGGTGACTGGTTCATCAGCCACAGTCATCTA  1038

seq1  TATATCAGAGGCGTGTGTAATCACAAAGACAAACGGCAATGACTCACATA  1100
      |||||||||||||||||| ||||| ||||  |||||||||||||| ||||
seq2  TATATCAGAGGCGTGTGT-ATCAC-AAGAACAACGGCAATGACTC-CATA  1085

seq1  AGTT  1104
      ||||
seq2  AGTT  1089

seq1: chr2_76529305_76530364
seq2: B6Ng01-027N11.g_67_1111 (reverse)

seq1  CTGTATCCATGTATCCAGCTCTGTCATGGTATAAAGCGTTTTAACAGCTG  50
      |||| ||||||| ||||||| |||||||  |  ||||||||  |||||||
seq2  CTGTTTCCATGT-TCCAGCTTTGTCATG--AATAAGCGTTT--ACAGCTG  45

seq1  AACCTTACAAAACAGTGGAAACTAAGTGATTTGGTGGCAAACATTTGTTT  100
       ||||||| ||||||||||||||||||||||||||||| ||||||   ||
seq2  -ACCTTAC-AAACAGTGGAAACTAAGTGATTTGGTGGC-AACATT--GTT  90

seq1  TGGTGATAGACGTTTCTAAGCTGTATAATGTTTCTAAGCTGTATTTCATC  150
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TGGTGATAGACG-TTCTAAGCTGTATAATGTTTCT-AGCTGTATTTCATC  138

seq1  TTTTTTTCCTTAGAAAGTTAGTTGTAAAAAGACTACAAAGATACTGTTTT  200
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -TTTTTTCCTTAGAAAGTTAGTTGTAAAAAGACTACAAAGATACTG-TTT  186

seq1  TTCTTGGATCTGGCAAGGTTGTACAGTAATATTGAGCCATCTGAAAACAG  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTTGGATCTGGCAAGGTTGTACAGTAATA-TGAGCCATCTGAAAACAG  235

seq1  AAGCTGAGATGCAGTTAGGCAGCTAGGTGGGTTTTTTGTTGTTTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGATGCAGTTAGGCAGCTAGGTGGGTTTTTTGTTGTTTTTGTTT  285

seq1  ATTTATATGAGTACACCATAGCTGTCTTCAGACACAGATTCCATTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGAGTACACCATAGCTGTCTTCAGACACAGATTCCATTACAGA  335

seq1  TGGTTGTGAGCCACCATGCTGGGAATTGAACTCAGGACTTCTGGAAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGAGCCACCATGCTGGGAATTGAACTCAGGACTTCTGGAAGATC  385

seq1  AGTCAGTGCTTTTAACTGCTGAGCCATCTCTCAAGCCCATTAGGTGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGCTTTTAACTGCTGAGCCATCTCTCAAGCCCATTAGGTGATTT  435

seq1  TGCTTTCTGTGTTTGCATGTTTACACTGGAAGAAAAAAAATTTTTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTGTGTTTGCATGTTTACACTGGAAGAAAAAAAATTTTTTTTGA  485

seq1  GCCACTGCATAACCACTGAACCATCTCTCTAGCTCCAAGACTGATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGCATAACCACTGAACCATCTCTCTAGCTCCAAGACTGATTTTAA  535

seq1  AAAACAGGTTTGTTTTGTTTTGATGGCAGGGCCTTATGTAGCACAGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGTTTGTTTTGTTTTGATGGCAGGGCCTTATGTAGCACAGGCTG  585

seq1  GCCTCAAACTGTCTACACAGTCCAGCATGCCTGATCCTAATTCTGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAACTGTCTACACAGTCCAGCATGCCTGATCCTAATTCTGCTCTT  635

seq1  CCCCACTCAGTGCTGGGACCAAGGTACAAGCCTCCATACCTGGTTTATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCAGTGCTGGGACCAAGGTACAAGCCTCCATACCTGGTTTATGC  685

seq1  AGGGCTGGGTTCAATCTCAGGGCTTCCTGCATCCTAGTTAAATACCCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGGTTCAATCTCAGGGCTTCCTGCATCCTAGTTAAATACCCTAC  735

seq1  CAACTAAGCTGCACACTTAGCCCTGAAAAATGTTTTTCCTAGCTTCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAGCTGCACACTTAGCCCTGAAAAATGTTTTTCCTAGCTTCCATG  785

seq1  TCACCATCTTTATGTTCTGTTTCTGCTGTCAGTGAATTTACATCTGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCTTTATGTTCTGTTTCTGCTGTCAGTGAATTTACATCTGAACA  835

seq1  TCTCTCATCTTGTTGGCATCCCCTTCAGCCTGCCTTTTTTTGTCAGTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATCTTGTTGGCATCCCCTTCAGCCTGCCTTTTTTTGTCAGTTAA  885

seq1  AGGTTGGCGTTAGATATATGCACTTGTGAAATCTCTAACTTAAAGCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGCGTTAGATATATGCACTTGTGAAATCTCTAACTTAAAGCTCAG  935

seq1  ATATTTGCAAACCACCTCTGTCTGCTGCTTCAGTGGACACTCTTCCTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCAAACCACCTCTGTCTGCTGCTTCAGTGGACACTCTTCCTAGA  985

seq1  AGCACGTCTTTGTCCTCCTTTCCCATTTAGAACATGACCTGAGAGTTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTCTTTGTCCTCCTTTCCCATTTAGAACATGACCTGAGAGTTTCT  1035

seq1  GCCTGAATTC  1060
      ||||||||||
seq2  GCCTGAATTC  1045