BAC Information

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BAC

Clone NameB6Ng01-027O19
Chromosome2 (Build37)
Map Location 90,540,630 - 90,692,110
singlet/doubletdoublet
Overlap geneNup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2
Upstream geneOlfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik
Downstream geneC1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027O19.bB6Ng01-027O19.g
ACCDH858538DH858539
length990911
definitionDH858538|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O19, 5' end.DH858539|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,691,120 - 90,692,110)(90,540,630 - 90,541,542)
sequence
gaattccaggccagctagggcagcatagtgagttcctgctggagggttgg
ataaaaagaaaatagaaaatggactagaacatagaagggcccaacacttt
caagcttagtagatgataattagcttcattattttctttgcctttttctc
tttcgctctgtttttttttgagacaggtctcgtagccaatatagccttga
acttttacctctgcctctctacctgcatagaggcttgctagaccatgcct
gtatttcatttcctagtcttaccagattaaaaacaaaaaccaaaccaaac
aaacaacaaaacaggcatcacttttttttttgtaaaaagaattactgctg
gatgcagtggcatacacctttaattctagcattcaggaggcaaaaggcaa
aaggaagaggatatctgtgaatcagagtctagctgtatctacctagagag
ctccaggacagtgaagaccacagagaaagactcttacctccacctcccat
gcccaagaggtctcctgagcccagctgaccatcctagggcctcccagccg
actgtggcttagggattacagtaggcaacgatgctttatgtgttgttaag
caggatatgagaatgcaaaagactcatggggcatgtctgtaacatgggca
gacggctcaagaagccaagggtatggttttttgccatcagactgggacca
tgtccctttgaagacatcctacaacccactgcttgccttctgtccatagc
tgtgcaggcttctttgcacatctgggtctacatatgtctcccaggccaac
tgctatctacgtgtgtgtccccaggggacttcagatagctcagcaccgtc
aagctaggttcttgtcatgaagacttgtaatgtcacatcagtagctgcct
tctgtatacatataacacccagcctttgaaaggctgcagggcacaaagtg
atgaaattctaaccacagttctggtgaggccaggcctatc
gaattctggtgcaagttctatgcctgcgttctccagtatcaggaagccct
ctcccaccctcttgctctacatttgaatcctgtcacaaacatggtgtgcc
ttctcaagaaggtaagggaactggagcattcagagctcctctgcaaagtt
caatgagactatattgatgcactttgaaattacaaaaacagcacgatggc
tcaggcctgtatatcctaatatttaagagactacatgggaatgcccttag
gatcccaggtcagcctctgcttcaacaaacaaaaacaacaatggtgataa
cacaagaatttcagtatttccttcacccatactcattgttggcttcaatt
ttggtgagagggttggttggtagctgggtagatcttagtgccagggattg
aatctgagcctattcatgctaataagcacacataatgcgctgaactgtat
ctccaaccccagtttgcttttctgcattgtttttgttttcttcctctttt
tcctcctcctcttgttctttttcttcatttttttatcctgagtcactgat
gccttgatatcggtaaatatttcagcacacattaacacagatactggaac
tggagacatggcttaatgattaatagtgctcgctacttctacagagtaac
ctgattcaatttctagcattcatggcaagtggtgattacttgtaactcta
gctatagggggtgaagcaccctcttctggccattttcttgctacctttaa
gactacatcttttttttttttttttttttaagatttatttatttatttta
tgtatgtgagtacattggtgctgtctttgacacacaaaagagggcaatcg
gatctcaatacagttggtcgtgagccacctgtggttgctgggaagtaaat
caggacctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90691120_90692110
seq2: B6Ng01-027O19.b_42_1031 (reverse)

seq1  GATAGGCCTGGCTTCACCAGAACTGTGGTTAGAATTTCATCACTTTGTGC  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATAGGCCTGGCCTCACCAGAACTGTGGTTAGAATTTCATCACTTTGTGC  50

seq1  CCTGCAGCCTTTCAAAGGCTGGGTGTTATATTGTATACAGAAGGCAGCTA  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTGCAGCCTTTCAAAGGCTGGGTGTTATA-TGTATACAGAAGGCAGCTA  99

seq1  CTGATGTGACATTACAAGTCTTCATGACAAGAACCTAGCTTGACGGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGACATTACAAGTCTTCATGACAAGAACCTAGCTTGACGGTGCT  149

seq1  GAGCTATCTGAAGTCCCCTGGGGACACACACGTAGATAGCAGTTGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATCTGAAGTCCCCTGGGGACACACACGTAGATAGCAGTTGGCCTG  199

seq1  GGAGACATATGTAGACCCAGATGTGCAAAGAAGCCTGCACAGCTATGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATATGTAGACCCAGATGTGCAAAGAAGCCTGCACAGCTATGGAC  249

seq1  AGAAGGCAAGCAGTGGGTTGTAGGATGTCTTCAAAGGGACATGGTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAAGCAGTGGGTTGTAGGATGTCTTCAAAGGGACATGGTCCCAG  299

seq1  TCTGATGGCAAAAAACCATACCCTTGGCTTCTTGAGCCGTCTGCCCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGCAAAAAACCATACCCTTGGCTTCTTGAGCCGTCTGCCCATGT  349

seq1  TACAGACATGCCCCATGAGTCTTTTGCATTCTCATATCCTGCTTAACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACATGCCCCATGAGTCTTTTGCATTCTCATATCCTGCTTAACAAC  399

seq1  ACATAAAGCATCGTTGCCTACTGTAATCCCTAAGCCACAGTCGGCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGCATCGTTGCCTACTGTAATCCCTAAGCCACAGTCGGCTGGGA  449

seq1  GGCCCTAGGATGGTCAGCTGGGCTCAGGAGACCTCTTGGGCATGGGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTAGGATGGTCAGCTGGGCTCAGGAGACCTCTTGGGCATGGGAGGT  499

seq1  GGAGGTAAGAGTCTTTCTCTGTGGTCTTCACTGTCCTGGAGCTCTCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAGAGTCTTTCTCTGTGGTCTTCACTGTCCTGGAGCTCTCTAGG  549

seq1  TAGATACAGCTAGACTCTGATTCACAGATATCCTCTTCCTTTTGCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAGCTAGACTCTGATTCACAGATATCCTCTTCCTTTTGCCTTTT  599

seq1  GCCTCCTGAATGCTAGAATTAAAGGTGTATGCCACTGCATCCAGCAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGAATGCTAGAATTAAAGGTGTATGCCACTGCATCCAGCAGTAA  649

seq1  TTCTTTTTACAAAAAAAAAAGTGATGCCTGTTTTGTTGTTTGTTTGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTACAAAAAAAAAAGTGATGCCTGTTTTGTTGTTTGTTTGGTTT  699

seq1  GGTTTTTGTTTTTAATCTGGTAAGACTAGGAAATGAAATACAGGCATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGTTTTTAATCTGGTAAGACTAGGAAATGAAATACAGGCATGGT  749

seq1  CTAGCAAGCCTCTATGCAGGTAGAGAGGCAGAGGTAAAAGTTCAAGGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGCCTCTATGCAGGTAGAGAGGCAGAGGTAAAAGTTCAAGGCTA  799

seq1  TATTGGCTACGAGACCTGTCTCAAAAAAAAACAGAGCGAAAGAGAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTACGAGACCTGTCTCAAAAAAAAACAGAGCGAAAGAGAAAAAG  849

seq1  GCAAAGAAAATAATGAAGCTAATTATCATCTACTAAGCTTGAAAGTGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAAATAATGAAGCTAATTATCATCTACTAAGCTTGAAAGTGTTG  899

seq1  GGCCCTTCTATGTTCTAGTCCATTTTCTATTTTCTTTTTATCCAACCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTCTATGTTCTAGTCCATTTTCTATTTTCTTTTTATCCAACCCTC  949

seq1  CAGCAGGAACTCACTATGCTGCCCTAGCTGGCCTGGAATTC  991
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAACTCACTATGCTGCCCTAGCTGGCCTGGAATTC  990

seq1: chr2_90540630_90541542
seq2: B6Ng01-027O19.g_71_981

seq1  GAATTCTGGTGCAAGTTCTATGCCTGCGTTCTCCAGTATCAGGAAGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTGCAAGTTCTATGCCTGCGTTCTCCAGTATCAGGAAGCCCT  50

seq1  CTCCCACCCTCTTGCTCTACATTTGAATCCTGTCACAAACATGGTGTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCTCTTGCTCTACATTTGAATCCTGTCACAAACATGGTGTGCC  100

seq1  TTCTCAAGAAGGTAAGGGAACTGGAGCATTCAGAGCTCCTCTGCAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGAAGGTAAGGGAACTGGAGCATTCAGAGCTCCTCTGCAAAGTT  150

seq1  CAATGAGACTATATTGATGCACTTTGAAATTACAAAAACAGCACGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGACTATATTGATGCACTTTGAAATTACAAAAACAGCACGATGGC  200

seq1  TCAGGCCTGTATATCCTAATATTTAAGAGACTACATGGGAATGCCCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTGTATATCCTAATATTTAAGAGACTACATGGGAATGCCCTTAG  250

seq1  GATCCCAGGTCAGCCTCTGCTTCAACAAACAAAAACAACAATGGTGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGGTCAGCCTCTGCTTCAACAAACAAAAACAACAATGGTGATAA  300

seq1  CACAAGAATTTCAGTATTTCCTTCACCCATACTCATTGTTGGCTTCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAATTTCAGTATTTCCTTCACCCATACTCATTGTTGGCTTCAATT  350

seq1  TTGGTGAGAGGGTTGGTTGGTAGCTGGGTAGATCTTAGTGCCAGGGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGAGGGTTGGTTGGTAGCTGGGTAGATCTTAGTGCCAGGGATTG  400

seq1  AATCTGAGCCTATTCATGCTAATAAGCACACATAATGCGCTGAACTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGCCTATTCATGCTAATAAGCACACATAATGCGCTGAACTGTAT  450

seq1  CTCCAACCCCAGTTTGCTTTTCTGCATTGTTTTTGTTTTCTTCCTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCCCAGTTTGCTTTTCTGCATTGTTTTTGTTTTCTTCCTCTTTT  500

seq1  TCCTCCTCCTCTTGTTCTTTTTCTTCATTTTTTTATCCTGAGTCACTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCTTGTTCTTTTTCTTCATTTTTTTATCCTGAGTCACTGAT  550

seq1  GCCTTGATATCGGTAAATATTTCAGCACACATTAACACAGATACTGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATATCGGTAAATATTTCAGCACACATTAACACAGATACTGGAAC  600

seq1  TGGAGACATGGCTTAATGATTAATAGTGCTCGCTACTTCTACAGAGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACATGGCTTAATGATTAATAGTGCTCGCTACTTCTACAGAGTAAC  650

seq1  CTGATTCAATTTCTAGCATTCATGGCAAGTGGTGATTACTTGTAACTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCAATTTCTAGCATTCATGGCAAGTGGTGATTACTTGTAACTCTA  700

seq1  GCTATAGGGGGTGAAGCACCCTCTTCTGGCCATTTCCTTGCTACC-TTAA  749
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  GCTATAGGGGGTGAAGCACCCTCTTCTGGCCATTTTCTTGCTACCTTTAA  750

seq1  GACTACATCTTTTTTTTTTTTTTTTTTTTAAGATTTATTTATTTATTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACATCTTTTTTTTTTTTTTTTTTTTAAGATTTATTTATTTATTTTA  800

seq1  TGTATGTGAGTACATTGTTGCTGTCTTTGGACACACTAGAAGAGGGC-AT  848
      ||||||||||||||||| |||||||||| ||||||| | |||||||| ||
seq2  TGTATGTGAGTACATTGGTGCTGTCTTT-GACACAC-AAAAGAGGGCAAT  848

seq1  CGGATCTCATTACAGTTGGTCGTGAGCCACCATGTGGTTGCCGGGAAGTG  898
      ||||||||| ||||||||||||||||||||| ||||||||| ||||||| 
seq2  CGGATCTCAATACAGTTGGTCGTGAGCCACC-TGTGGTTGCTGGGAAGT-  896

seq1  AACTCAGGACCTTTG  913
      || ||||||||||||
seq2  AAATCAGGACCTTTG  911