BAC Information

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BAC

Clone NameB6Ng01-027P02
Chromosome2 (Build37)
Map Location 97,143,162 - 97,241,452
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043267
Downstream geneLrrc4c, LOC621146, LOC664974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027P02.bB6Ng01-027P02.g
ACCDH858552DH858553
length9441,025
definitionDH858552|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P02, 5' end.DH858553|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,143,162 - 97,144,108)(97,240,425 - 97,241,452)
sequence
gaattcattcataatctcttaaaggacccctatcatattcataaagttgt
ttttaaggttgttattatgtgctatgactatgttggaatactcaggattt
gttgtagtaagtaggatagctgagctctggtggtgacattttaccctcga
tgttgttgattttcttctaacactggtgtctaagtatctgggtctggggt
actattgttcttggttacagaacatcttaagactcaaaataatactacat
gatttttgctttagagatttccatctctttatgcacagttttgcacctaa
tactaaggtgctctgacatccattttgaatccttagcacagtaagcatag
actgagaggccccacagtagaacgcatagatatcaaagaaacccaaatat
gaataaaaacacaaacacccacctcttcgaatggtgtaaagatataataa
atacaaataaactactaattttgcctgcctgaatctcaataaatattatt
tattgttgttgttgttattattccagcagtttgaagaacagtagaacctt
caattttatgaaatgaaattgtcttatttaaaagtgtcactaacagtgct
tgccaagtatattgttttaaattattaatttacaaattgcaaattgaatt
tgttacattattaaattatattttgttctgttctcaaaatgaatattaac
aaaatattaattcaccataatgcaaatgtctttttcaagtttagtgacat
gtcagttaatcatgagagaatatgtttgtctccatggctcctttgtcctt
tggctttgagtttttttcttctgttctgtgtttgctttgtctcactctgg
tgtgtggtttttaattttctcttattttactattatttttacagcctatt
tgcatttggataagagagatggagagagaggatgtggattgaat
gaattctttgttcagttctgagccccattttttaatgggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctc
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattcttgcccttggcgggccgcagacagccggcc
accatccggaccagaggacaggtgtctgcctggcttgggaggcggcctca
gcctcagcagcagcggtcgccatcttggttccgggactcagcagaactta
ggaaattagtctgaacaggttagagggtgcgccagagaaccggacagctt
ctgggacgggcagaagcacagagccgctgaggcagcatcctgctttctta
caccaactaaaaatgaatctttgtcctttataagtacagaaacacacaaa
gtactgattttaggtttcaaaggcaaaactgatgatgtctttcaggtaac
attagaggtgggagaataacttcatagtcagaattgcctttataaatgac
ctcacattccagatatttttgataattaaaatatagtgtcatatgcatca
caaggcaaaacaagccaatattgaactttccaaggctctctttgcaagtt
atcgcctgtcttcacaatatcaaatcttcttgtaagagtatccagtaaca
aaaattataaaaccatgaaatatctaacatttcttatgtcttccccaatt
taaaatgtatgaacgataagacttttagcaactgtattaattgatatatt
tcatttacatttgaagctggaaggaaaggagattgtcatacttgatacaa
gcacttttcttcccttacagcaaggtttggatcctgttggacaggaaatt
gaatagacattcataaggtttagaacaggagagcaagatatttgatccta
atcagtcattcaattatacttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_97143162_97144108
seq2: B6Ng01-027P02.b_44_987

seq1  GAATTCATTCATAATCTCTTAAAGGACCCCTATCATATTCATAAAGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATAATCTCTTAAAGGACCCCTATCATATTCATAAAGTTGT  50

seq1  TTTTAAGGTTGTTATTATGTGCTATGACTATGTTGGAATACTCAGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGTTGTTATTATGTGCTATGACTATGTTGGAATACTCAGGATTT  100

seq1  GTTGTAGTAAGTAGGATAGCTGAGCTCTGGTGGTGACATTTTACCCTCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGTAAGTAGGATAGCTGAGCTCTGGTGGTGACATTTTACCCTCGA  150

seq1  TGTTGTTGATTTTCTTCTAACACTGGTGTCTAAGTATCTGGGTCTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGATTTTCTTCTAACACTGGTGTCTAAGTATCTGGGTCTGGGGT  200

seq1  ACTATTGTTCTTGGTTACAGAACATCTTAAGACTCAAAATAATACTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTTCTTGGTTACAGAACATCTTAAGACTCAAAATAATACTACAT  250

seq1  GATTTTTGCTTTAGAGATTTCCATCTCTTTATGCACAGTTTTGCACCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGCTTTAGAGATTTCCATCTCTTTATGCACAGTTTTGCACCTAA  300

seq1  TACTAAGGTGCTCTGACATCCATTTTGAATCCTTAGCACAGTAAGCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGTGCTCTGACATCCATTTTGAATCCTTAGCACAGTAAGCATAG  350

seq1  ACTGAGAGGCCCCACAGTAGAACGCATAGATATCAAAGAAACCCAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGGCCCCACAGTAGAACGCATAGATATCAAAGAAACCCAAATAT  400

seq1  GAATAAAAACACAAACACCCACCTCTTCGAATGGTGTAAAGATATAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAACACAAACACCCACCTCTTCGAATGGTGTAAAGATATAATAA  450

seq1  ATACAAATAAACTACTAATTTTGCCTGCCTGAATCTCAATAAATATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATAAACTACTAATTTTGCCTGCCTGAATCTCAATAAATATTATT  500

seq1  TATTGTTGTTGTTGTTATTATTCCAGCAGTTTGAAGAACAGTAGAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTGTTGTTATTATTCCAGCAGTTTGAAGAACAGTAGAACCTT  550

seq1  CAATTTTATGAAATGAAATTGTCTTATTTAAAAGTGTCACTAACAGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTATGAAATGAAATTGTCTTATTTAAAAGTGTCACTAACAGTGCT  600

seq1  TGCCAAGTATATTGTTTTAAATTATTAATTTACAAATTGCAAATTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTATATTGTTTTAAATTATTAATTTACAAATTGCAAATTGAATT  650

seq1  TGTTACATTATTAAATTATATTTTGTTCTGTTCTCAAAATGAATATTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATTATTAAATTATATTTTGTTCTGTTCTCAAAATGAATATTAAC  700

seq1  AAAATATTAATTCACCATAATGCAAATGTCTTTTTCAAGTTTAGTGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAATTCACCATAATGCAAATGTCTTTTTCAAGTTTAGTGACAT  750

seq1  GTCAGTTAATCATGAGAGAATATGTTTGTCTCCATGGCTCCTTTGTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTAATCATGAGAGAATATGTTTGTCTCCATGGCTCCTTTGTCCTT  800

seq1  TGGCTTTGAGTTTTTTTCTTCTGTTTCTGTGTTTGCTTTGTCTCACTCTG  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGCTTTGAGTTTTTTTCTTCTG-TTCTGTGTTTGCTTTGTCTCACTCTG  849

seq1  GTGTGTGGTTTTTAATTTTCTCTTATTTTACTATTATTTTTACAAGCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGTGTGGTTTTTAATTTTCTCTTATTTTACTATTATTTTTAC-AGCCTA  898

seq1  TTTGCATTTGGATAAGAGAGATGGAGAGAGAGGATGTGGATTTGAAT  947
      |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGCATTTGGATAAGAGAGATGGAGAGAGAGGATGTGGA-TTGAAT  944

seq1: chr2_97240425_97241452
seq2: B6Ng01-027P02.g_70_1084 (reverse)

seq1  AATTGAATGACTTGACTAAGGATCAAATATTCTTTTGCTTCTCCTGTTCT  50
      ||||||||||| ||| | |||||||||||   | |||| |||||||||| 
seq2  AATTGAATGAC-TGA-TTAGGATCAAATA---TCTTGC-TCTCCTGTTC-  43

seq1  TAAAACTTATGAAATGTCTATTCATATTTCCTTGTCCAACAGGATCCAAA  100
      |||| |||||| |||||||||||| |||||| ||||||||||||||||||
seq2  TAAACCTTATG-AATGTCTATTCA-ATTTCC-TGTCCAACAGGATCCAAA  90

seq1  CCTTGCTGCTAAGGGAAGAAAAAGTGCTTGTTATCAAGTATGACAATCTC  150
      |||||||| ||||||||| ||||||||||| |||||||||||||||||||
seq2  CCTTGCTG-TAAGGGAAG-AAAAGTGCTTG-TATCAAGTATGACAATCTC  137

seq1  CTTTCCTTCCAGCTTCAAATGTAAATGAAATATTATCAATTAATACAGTT  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTCCTTCCAGCTTCAAATGTAAATGAAATA-TATCAATTAATACAGTT  186

seq1  GCTAAAAGTCTTATCGTTCATACATTTTAAATTGGGGAAGACATAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGTCTTATCGTTCATACATTTTAAATTGGGGAAGACATAAGAAA  236

seq1  TGTTAGATATTTCATGGTTTTATAATTTTTGTTACTGGATACTCTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATATTTCATGGTTTTATAATTTTTGTTACTGGATACTCTTACAA  286

seq1  GAAGATTTGATATTGTGAAGACAGGCGATAACTTGC-AAGAGAGCCTTGG  349
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAGATTTGATATTGTGAAGACAGGCGATAACTTGCAAAGAGAGCCTTGG  336

seq1  AAAGTTCAATATTGGCTTGTTTTGCCTTGTGATGCATATGACACTATATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAATATTGGCTTGTTTTGCCTTGTGATGCATATGACACTATATT  386

seq1  TTAATTATCAAAAATATCTGGAATGTGAGGTCATTTATAAAGGCAATTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATCAAAAATATCTGGAATGTGAGGTCATTTATAAAGGCAATTCT  436

seq1  GACTATGAAGTTATTCTCCCACCTCTAATGTTACCTGAAAGACATCATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGAAGTTATTCTCCCACCTCTAATGTTACCTGAAAGACATCATCA  486

seq1  GTTTTGCCTTTGAAACCTAAAATCAGTACTTTGTGTGTTTCTGTACTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCTTTGAAACCTAAAATCAGTACTTTGTGTGTTTCTGTACTTAT  536

seq1  AAAGGACAAAGATTCATTTTTAGTTGGTGTAAGAAAGCAGGATGCTGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAAAGATTCATTTTTAGTTGGTGTAAGAAAGCAGGATGCTGCCT  586

seq1  CAGCGGCTCTGTGCTTCTGCCCGTCCCAGAAGCTGTCCGGTTCTCTGGCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGCTCTGTGCTTCTGCCCGTCCCAGAAGCTGTCCGGTTCTCTGGCG  636

seq1  CACCCTCTAACCTGTTCAGACTAATTTCCTAAGTTCTGCTGAGTCCCGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTAACCTGTTCAGACTAATTTCCTAAGTTCTGCTGAGTCCCGGA  686

seq1  ACCAAGATGGCGACCGCTGCTGCTGAGGCTGAGGCCGCCTCCCAAGCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATGGCGACCGCTGCTGCTGAGGCTGAGGCCGCCTCCCAAGCCAG  736

seq1  GCAGACACCTGTCCTCTGGTCCGGATGGTGGCCGGCTGTCTGCGGCCCGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACCTGTCCTCTGGTCCGGATGGTGGCCGGCTGTCTGCGGCCCGC  786

seq1  CAAGGGCAAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCAAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGC  836

seq1  AAGGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGA  886

seq1  AAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATAT  936

seq1  ATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCATTAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCATTAAAA  986

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  1028
      |||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGAATTC  1015