BAC Information

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BAC

Clone NameB6Ng01-028B04
Chromosome2 (Build37)8 (Build37)
Map Location 142,776,651 - 142,777,6983,955,220 - 3,956,222
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028B04.bB6Ng01-028B04.g
ACCDH858650DH858651
length968996
definitionDH858650|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B04, 5' end.DH858651|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,651 - 142,777,698)(3,955,220 - 3,956,222)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgctcatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttcgttagagtcacgccgagatatttatatattt
gtggctatgagaaggtgt
gaattcctgccactagtggcagaccaagcctggagagtgtgtgactctga
aagcttgaagaggggatcctgtgatggccagctgggccatcagccttccc
agactggccctgatacctcctgtctgaccattcagacagaagggacagga
acactccagctgctcttattggctcagcacagggactgcctgtttgaagt
ctcctcataccagagatgctcagacactacagcctaggcacaggaaattg
ccaagtaggcaactggttccaccaagtgtctctggggcactaagaatgca
cagcaagtaacaggcatggcaacttggggtgaggactttaagatttattg
actgattgattgattgattgattgtgagtatactgtcactgtcttcagac
acaccagaagagggcatcagatcccattacaggtggttgtgggccaccat
atggtagctgggaattgaactcaggtcctctggaagagcagtcagtgctc
ttaaccactgagcaatttctccagccccttggggtgggggggtcttgtga
ttcagagtgcccgctaatactggtgtgaacccaagttcccagaaaaggag
aagaaaaaaaagccataccaagttaaatatttcataaatctgattaactg
cttagaatttgaatgatttgtggagagttggaatgttacaggtgaggagt
caattatctggagctttagcttgctaacttttccatgtatagcttatgta
tgtgaacaacctaatgtcttcatggctgtacataaatccttttggggatg
acataaaagacctggagcttctgtcacccaaagctaagaatgtcatcagc
gagcctctgagctttctgtaactctcaccgagtgtgagtaatggcttttc
ttgtcctgcactctaaaaacttatcactcacatttccaggttcagttcat
catgtggggagtcatgcaacattgaaacgccagtctcttcacagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776651_142777698
seq2: B6Ng01-028B04.b_42_629 (reverse)

seq1  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAG  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATAG  50

seq1  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCG  100

seq1  ACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAAT  150
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAT  150

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCC  200

seq1  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  250

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  300

seq1  CTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGC  350
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  CTTGAAGATATGAGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGC  350

seq1  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  400

seq1  GTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACA  450
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  GTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACA  450

seq1  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  500
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  500

seq1  CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACC  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACC  550

seq1  CCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCAT  600
      || ||||||||||||||||| ||            ||| |||||    ||
seq2  CCCTTAAAAAATGGGGCTCAGAA----------CTGAACAAAGA----AT  586

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  650
      |                                                 
seq2  TC------------------------------------------------  588

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  700
                                                        
seq2  --------------------------------------------------  588

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  750
                                                        
seq2  --------------------------------------------------  588

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  800
                                                        
seq2  --------------------------------------------------  588

seq1  GAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  850
                                                        
seq2  --------------------------------------------------  588

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAG  900
                                                        
seq2  --------------------------------------------------  588

seq1  ACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  950
                                                        
seq2  --------------------------------------------------  588

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAA  1000
                                                        
seq2  --------------------------------------------------  588

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1048
                                                      
seq2  ------------------------------------------------  588

seq1: chr8_3955220_3956222
seq2: B6Ng01-028B04.g_67_1062 (reverse)

seq1  GACTGTGGATGTGACTGGCTGTCTC-ATGTTGCCATGACTCCCCACAGTG  49
      |||||| || | ||||||| || || |||||| |||||||||||||| ||
seq2  GACTGT-GAAGAGACTGGC-GTTTCAATGTTG-CATGACTCCCCACA-TG  46

seq1  ATGAACTGATACCTGGAACTGTGAGTGATGAAGTTTTTAAGAGTGCCAGG  99
      ||||||||| |||||||| |||||||||| |||||||| |||||| ||||
seq2  ATGAACTGA-ACCTGGAAATGTGAGTGAT-AAGTTTTT-AGAGTG-CAGG  92

seq1  ACAAAGAAAGCCATTACTCACACTCGGTGAGGGTTACAGAAAGCTCAGAG  149
      ||||  ||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAAGAAAAGCCATTACTCACACTCGGTGAGAGTTACAGAAAGCTCAGAG  142

seq1  GCTCGCTGATGACATTCTTAGCCTTTGGGTTGACAGAAGCT-CAGGTCTT  198
      ||||||||||||||||||||| ||||||| ||||||||||| ||||||||
seq2  GCTCGCTGATGACATTCTTAG-CTTTGGG-TGACAGAAGCTCCAGGTCTT  190

seq1  TTATGTACATCCCC-AAAGGATTTATGTACAGCCATGAAGACATTAGGTT  247
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATGT-CATCCCCAAAAGGATTTATGTACAGCCATGAAGACATTAGGTT  239

seq1  GTTCACATACATAAGCTATACATGG-AAAGTTAGCAAGCTAAAGCTCCAG  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTCACATACATAAGCTATACATGGAAAAGTTAGCAAGCTAAAGCTCCAG  289

seq1  ATAATTGACTCCTCACCTGTAACATTCCAACTCTCCACAAATCATTCAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGACTCCTCACCTGTAACATTCCAACTCTCCACAAATCATTCAAA  339

seq1  TTCTAAGCAGTTAATCAGATTTATGAAATATTTAACTTGGTATGGCTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCAGTTAATCAGATTTATGAAATATTTAACTTGGTATGGCTTTT  389

seq1  TTTTCTTCTCCTTTTCTGGGAACTTGGGTTCACACCAGTATTAGCGGGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTCCTTTTCTGGGAACTTGGGTTCACACCAGTATTAGCGGGCA  439

seq1  CTCTGAATCACAAGACCCCCCCACCCCAAGGGGCTGGAGAAATTGCTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATCACAAGACCCCCCCACCCCAAGGGGCTGGAGAAATTGCTCAG  489

seq1  TGGTTAAGAGCACTGACTGCTCTTCCAGAGGACCTGAGTTCAATTCCCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGAGCACTGACTGCTCTTCCAGAGGACCTGAGTTCAATTCCCAG  539

seq1  CTACCATATGGTGGCCCACAACCACCTGTAATGGGATCTGATGCCCTCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATATGGTGGCCCACAACCACCTGTAATGGGATCTGATGCCCTCTT  589

seq1  CTGGTGTGTCTGAAGACAGTGACAGTATACTCACAATCAATCAATCAATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTCTGAAGACAGTGACAGTATACTCACAATCAATCAATCAATC  639

seq1  AATCAGTCAATAAATCTTAAAGTCCTCACCCCAAGTTGCCATGCCTGTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCAATAAATCTTAAAGTCCTCACCCCAAGTTGCCATGCCTGTTA  689

seq1  CTTGCTGTGCATTCTTAGTGCCCCAGAGACACTTGGTGGAACCAGTTGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTGCATTCTTAGTGCCCCAGAGACACTTGGTGGAACCAGTTGCC  739

seq1  TACTTGGCAATTTCCTGTGCCTAGGCTGTAGTGTCTGAGCATCTCTGGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGCAATTTCCTGTGCCTAGGCTGTAGTGTCTGAGCATCTCTGGTA  789

seq1  TGAGGAGACTTCAAACAGGCAGTCCCTGTGCTGAGCCAATAAGAGCAGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGACTTCAAACAGGCAGTCCCTGTGCTGAGCCAATAAGAGCAGCT  839

seq1  GGAGTGTTCCTGTCCCTTCTGTCTGAATGGTCAGACAGGAGGTATCAGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTCCTGTCCCTTCTGTCTGAATGGTCAGACAGGAGGTATCAGGG  889

seq1  CCAGTCTGGGAAGGCTGATGGCCCAGCTGGCCATCACAGGATCCCCTCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGGGAAGGCTGATGGCCCAGCTGGCCATCACAGGATCCCCTCTT  939

seq1  CAAGCTTTCAGAGTCACACACTCTCCAGGCTTGGTCTGCCACTAGTGGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTCAGAGTCACACACTCTCCAGGCTTGGTCTGCCACTAGTGGCA  989

seq1  GGAATTC  1003
      |||||||
seq2  GGAATTC  996