BAC Information

Click to search

BAC

Clone NameB6Ng01-028E16
Chromosome2 (Build37)Y (Build37)
Map Location 154,694,992 - 154,696,058385,596 - 385,701
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly
Downstream geneEif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028E16.bB6Ng01-028E16.g
ACCDH858808DH858809
length1,064951
definitionDH858808|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E16, 5' end.DH858809|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(154,694,992 - 154,696,058)(385,596 - 385,701)
sequence
gaattctatgaatatccttcatggaaaccccagagttgttttttcgagac
agggtttctctgtatagccctggctgtcctggaactcactttgtagacca
ggctggtctcgaactcagaaatcctcctgcctctgcctcctgagtgctgg
gattaaaggcgtgcgccaccacacctggcttgttatttctaattttaaac
tattaagaaaggaacagatttttactaagcatttatacaattttgttata
gttccatgaaaataagaacacatacatatttccaaaaaccttaaaaattt
tctttaaatatgaacaacttgcaaaatgtaatattttagctgcaaaaccc
agtaagatttaaattttatgtgtatgagtgttttgcttgcattaatatct
acaacacttctgctcctagtgcctgcagagggtgccggatcccctgaaag
tggaggagctacagatggttttgagctactacgtgggtgctgggaaccaa
tcctgggttctctagaatagctaagtcattattccatccccatttctgaa
gcaatttgtaactagacaaccttgagagtatccaaatactcttagtttgt
tccattgactatttgagacaatttaagtctttgggggtgggggctttaaa
aggtgatttgtctatggggttcaagagatctctgcttatcttgaacattt
gcctagttgtctcactagcttcaagcttgggagattgtacacagatctta
tgttaccaattttatctattatttcccatttgaacaaatcaaacttaaat
tctcaggactgccataggtctttttcagccattcatggctgacaagtatg
ttaaatgagtccagttacatgagtggcaacagaaatagtctcatcagcat
gggactgtaggacagtactttcattttgctgacctgtttgttactgtttt
gggaatggcctcttggtttagctgttgtctggtcatttcagtacatgttt
ctgcactaagttgtctgctcttaggaactgaatctatacagcagaacttc
ttctgcctagtttt
gaattccatctatttgcttgttcatttgtttgagatgtagtctcatagca
aaggatgactgaacttctggctctcctgcctctaccttccaagtgttggg
aatcacaagcatacacctcatatccggttggtttcttttctttttttgag
acaggggctcacgatgtggccttggctgacctggaactcactatgtagac
caagctggccttgaactcatagagattgaaggggttggccaccatgtcta
gtgccatgtccagttttatgtgatgctggggaatcaaacccagggtttca
cacaggttaggctgaagaatgaaaaattactggcctcttgtaagaacatg
aattttttacctcggagcccaccccctcccatctagagattgttcccaga
acactcctaaacttttcaccccaaaactcctcaccctaaagttcgaaccc
tcccaactaaaaactgttccaagaacatttttgagataaaggcctcctgg
aacaacctcaaaatgaaccaggtactccttagttacgtaggttccttgat
aggacatgactccttagttacgtagattccttgataggacatgactcctt
agttacgtagattcctttggcagaactccctagtgatgtaaacttgtact
tttcctgcccagttctccccctttgagttttactatataagcctgtgaaa
aattttggctgactgtcgagactcctctaccctgtgctaaggtgtatgag
tttcgacttcagagctctgtgtgcttccatgttgctgctttatttcgacc
ccagagctctggtctgtgtgcttttcatgttgctgccttattaaatctta
ccttctacattttatgtatggtctcagtgtcttcttgggtacgcggctgt
cccgggacttgagtgtctgagtaagggtctcacttcggggtcttttattt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154694992_154696058
seq2: B6Ng01-028E16.b_40_1103

seq1  GAATTCTATGAATATCCTTCATGGAAACCCCAGAGTTGTTTTTTCGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAATATCCTTCATGGAAACCCCAGAGTTGTTTTTTCGAGAC  50

seq1  AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  100

seq1  GGCTGGTCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCTGAGTGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCTGAGTGCTGG  150

seq1  GATTAAAGGCGTGCGCCACCACACCTGGCTTGTTATTTCTAATTTTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCGTGCGCCACCACACCTGGCTTGTTATTTCTAATTTTAAAC  200

seq1  TATTAAGAAAGGAACAGATTTTTACTAAGCATTTATACAATTTTGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAAAGGAACAGATTTTTACTAAGCATTTATACAATTTTGTTATA  250

seq1  GTTCCATGAAAATAAGAACACATACATATTTCCAAAAACCTTAAAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGAAAATAAGAACACATACATATTTCCAAAAACCTTAAAAATTT  300

seq1  TCTTTAAATATGAACAACTTGCAAAATGTAATATTTTAGCTGCAAAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAATATGAACAACTTGCAAAATGTAATATTTTAGCTGCAAAACCC  350

seq1  AGTAAGATTTAAATTTTATGTGTATGAGTGTTTTGCTTGCATTAATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATTTAAATTTTATGTGTATGAGTGTTTTGCTTGCATTAATATCT  400

seq1  ACAACACTTCTGCTCCTAGTGCCTGCAGAGGGTGCCGGATCCCCTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTTCTGCTCCTAGTGCCTGCAGAGGGTGCCGGATCCCCTGAAAG  450

seq1  TGGAGGAGCTACAGATGGTTTTGAGCTACTACGTGGGTGCTGGGAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGCTACAGATGGTTTTGAGCTACTACGTGGGTGCTGGGAACCAA  500

seq1  TCCTGGGTTCTCTAGAATAGCTAAGTCATTATTCCATCCCCATTTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTTCTCTAGAATAGCTAAGTCATTATTCCATCCCCATTTCTGAA  550

seq1  GCAATTTGTAACTAGACAACCTTGAGAGTATCCAAATACTCTTAGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGTAACTAGACAACCTTGAGAGTATCCAAATACTCTTAGTTTGT  600

seq1  TCCATTGACTATTTGAGACAATTTAAGTCTTTGGGGGTGGGGGCTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGACTATTTGAGACAATTTAAGTCTTTGGGGGTGGGGGCTTTAAA  650

seq1  AGGTGATTTGTCTATGGGGTTCAAGAGATCTCTGCTTATCTTGAACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTTGTCTATGGGGTTCAAGAGATCTCTGCTTATCTTGAACATTT  700

seq1  GCCTAGTTGTCTCACTAGCTTCAAGCTTGGGAGATTGTACACAGATCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTGTCTCACTAGCTTCAAGCTTGGGAGATTGTACACAGATCTTA  750

seq1  TGTTACCAATTTTATCTATTATTTCCCATTTGAACAAATCAAACTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAATTTTATCTATTATTTCCCATTTGAACAAATCAAACTTAAAT  800

seq1  TCTCAGGACTGCCATAGGTCTTTTTCAGCCATTCATGGCTGACAAGTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGACTGCCATAGGTCTTTTTCAGCCATTCATGGCTGACAAGTATG  850

seq1  TTAAATGAGTCCAGTTACATGAGTGGCAACAGAAATAGTCTCATCAGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGTCCAGTTACATGAGTGGCAACAGAAATAGTCTCATCAGCAT  900

seq1  GGGACTGTAGGACAGTACTTCCATTTTGCTGACCTTGTTTGTTACTGTTT  950
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  GGGACTGTAGGACAGTACTTTCATTTTGCTGACC-TGTTTGTTACTGTTT  949

seq1  TGGGAAATGGCCTCTTGGTTTAGCTGTTGTCCTGGTCATTTCAGTACATG  1000
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGG-AATGGCCTCTTGGTTTAGCTGTTGT-CTGGTCATTTCAGTACATG  997

seq1  TTTCTGCACT-AGTTGTCTGCTCTTTAGGAACTGAATCTATACAGCAGAA  1049
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  TTTCTGCACTAAGTTGTCTGCTC-TTAGGAACTGAATCTATACAGCAGAA  1046

seq1  CTTCTTCTGCCTAGTTTT  1067
      ||||||||||||||||||
seq2  CTTCTTCTGCCTAGTTTT  1064

seq1: chrY_385596_385701
seq2: B6Ng01-028E16.g_197_284

seq1  TTTCTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGTTTTCTCTAT  50
                      ||| ||||  ||||||||||||||    |||   
seq2  ----------------TTTCTTTTCTTTTTTTGAGACAGG--GGCTCACG  32

seq1  ATATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG  100
      || | ||| |||||| ||||||||||||| ||||||||| |||||||| |
seq2  ATGTGGCCTTGGCTGACCTGGAACTCACTATGTAGACCAAGCTGGCCTTG  82

seq1  AACTCA  106
      ||||||
seq2  AACTCA  88